View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_63 (Length: 221)
Name: NF11133_low_63
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 40363580 - 40363434
Alignment:
| Q |
61 |
gaacagaaattattcttctcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaattcttatggaaaattgtaacatccaa |
160 |
Q |
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| T |
40363580 |
gaacagaaattattcttctcaaatctacaaatagatttcttattattctgaataaccctaaatgttgacaccaattcttatggaaaatcgtaacatccaa |
40363481 |
T |
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| Q |
161 |
aggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
207 |
Q |
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| T |
40363480 |
aggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
40363434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 40359399 - 40359271
Alignment:
| Q |
72 |
attcttctcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaa-ttcttatggaaaattgtaacatccaaaggacaaaat |
170 |
Q |
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| T |
40359399 |
attcttttcaaatctacgaatagatttcttattattccgaataaccctagacatcggtgccaacgtcttatgcagaattgtaatatcaaaaggac-aaac |
40359301 |
T |
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| Q |
171 |
aatttccaacaactccttccaataaagttc |
200 |
Q |
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| T |
40359300 |
aaactccaacaactcctgccaatgaagttc |
40359271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 11346535 - 11346465
Alignment:
| Q |
136 |
tcttatggaaaattgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
207 |
Q |
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| T |
11346535 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttcttctgtg |
11346465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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