View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_low_69 (Length: 218)

Name: NF11133_low_69
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_low_69
NF11133_low_69
[»] chr6 (16 HSPs)
chr6 (1-208)||(33304807-33305014)
chr6 (1-157)||(33272178-33272334)
chr6 (5-178)||(33410313-33410489)
chr6 (1-186)||(31562365-31562547)
chr6 (1-135)||(33399351-33399485)
chr6 (1-135)||(33644144-33644278)
chr6 (1-134)||(33388467-33388600)
chr6 (1-157)||(33057937-33058093)
chr6 (1-133)||(33359118-33359250)
chr6 (1-157)||(9167147-9167303)
chr6 (1-113)||(33285964-33286076)
chr6 (1-135)||(28869742-28869875)
chr6 (1-207)||(33262950-33263165)
chr6 (155-199)||(9167084-9167128)
chr6 (1-39)||(33399519-33399557)
chr6 (77-152)||(28873096-28873174)
[»] scaffold1408 (2 HSPs)
scaffold1408 (1-127)||(1057-1183)
scaffold1408 (151-207)||(971-1027)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-127)||(6803-6929)
scaffold0428 (151-207)||(6717-6773)
[»] chr2 (1 HSPs)
chr2 (5-152)||(17440377-17440524)
[»] chr4 (8 HSPs)
chr4 (1-135)||(31498595-31498729)
chr4 (12-156)||(31157586-31157730)
chr4 (51-156)||(31032510-31032615)
chr4 (1-188)||(31148655-31148839)
chr4 (1-153)||(31027950-31028102)
chr4 (60-156)||(31017926-31018022)
chr4 (1-116)||(31503708-31503823)
chr4 (12-190)||(31526766-31526944)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33305014 - 33304807
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33305014 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaataacatattcagtcttagctctcttgaa 33304915  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaagcatgatataagtgaaagtgcatcacattccagatcaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304914 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaagcatgatataagtgaaagtgcatcacattccagatcaatgt 33304815  T
Q  201 cctctgtg 208  Q
    ||||||||    
T  33304814 cctctgtg 33304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 33272334 - 33272178
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  33272334 atctattggacttctaagaaagcttgtttacttgaatttaaaaaattgcaaaaatctagtaagcatacccaacaacatatttgatctttgctctcttgaa 33272235  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaag 157  Q
    ||||||||||||  ||| ||||| ||||||||||| |||||||||||||||||||||    
T  33272234 gatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaag 33272178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 33410489 - 33410313
Alignment:
Q  5 attggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaagatc 104  Q
    |||||||||||||||||||||||||||||||||||  |  | |||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  33410489 attggacttctaagaaagcttgtttacttgaatttggactattgcataaatttagtaagcatacccaacagcatattctgtcttagctctcttgaagatc 33410390  T
Q  105 taaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttga---agaagaagcatgatataagtgaaagt 178  Q
    || |||||| ||| ||||||||||||||||| ||| ||| | ||||||   |||||||||||||||||| |||||||    
T  33410389 tatatatgtgtggctgttccaaagtgtttaacaattcaaggaatttgatcgagaagaagcatgatataaatgaaagt 33410313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 31562365 - 31562547
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||  |||||||  ||||||||||||| | |  ||| | | ||| | ||||||||||||||||||||||||||||||||||||||||    
T  31562365 atctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcatacccaacaacatattcagtcttagctctcttgaa 31562464  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaagcatgatataagtgaaagtgcatcaca 186  Q
    ||||||||||||  ||| ||||||||||||||| |  |||||||||||||   |||||||| ||||||||||||||||||||||||    
T  31562465 gatctaaatatgcgtggctgttccaaagtgtttgatgatccaatgcattt---gaagaagcctgatataagtgaaagtgcatcaca 31562547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 33399485 - 33399351
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||||||||||||||| ||||||| || | || ||  ||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  33399485 atctattggacttctaagaaagcttgtttgcttgaatgtaaaagattgtgaaaatctggtaagcatacccaacaacatattcgatcttagctctcttgaa 33399386  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaa 135  Q
     ||||||||||| |||| |||||||||||||||||    
T  33399385 tatctaaatatgaatggctgttccaaagtgtttaa 33399351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33644144 - 33644278
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||| ||||||||||||||||||||||| || | || ||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  33644144 atctattggacttttaagaaagcttgtttacttgaatgtaaaagattgtgaaaatctggtaagcatacccaacaacatattcagtcttagctctcttcaa 33644243  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaa 135  Q
    ||||||||| ||  ||| |||||||||||||||||    
T  33644244 gatctaaatttgggtggttgttccaaagtgtttaa 33644278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 33388600 - 33388467
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||  | |  |||  ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  33388600 atctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaa 33388501  T
Q  101 gatctaaatatgtatggatgttccaaagtgttta 134  Q
    ||||||||||| | ||| |||||||||| |||||    
T  33388500 gatctaaatatatgtggttgttccaaagcgttta 33388467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 33058093 - 33057937
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||  || | || ||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||    
T  33058093 atctattggacttctaagaaagcttgtttacttgaacctaaaagattgcaaaagtctagttagcatacccaacaacatattcggtcttagctctcttcaa 33057994  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaag 157  Q
     | |||||||||| ||| ||||||||||| ||||| || |||| || ||||| ||||    
T  33057993 tacctaaatatgtgtggctgttccaaagtatttaacaacccaaggcgtttgatgaag 33057937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 33359250 - 33359118
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||| |||||||||||| |||||||||||||||||| ||| | || | |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33359250 atctcttggacttctaaaaaagcttgtttacttgaacttaaaagattacaaaaatctagtaagcatacccaacaacatatttggtcttagctctcttgaa 33359151  T
Q  101 gatctaaatatgtatggatgttccaaagtgttt 133  Q
    |||| ||||||||  || |||||||||||||||    
T  33359150 gatcaaaatatgtgcggttgttccaaagtgttt 33359118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 9167303 - 9167147
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||| |||||||||||||||||||||||||||||||| || | || ||   ||||||| |||| |||||||||||||||||| |||||||||||||| ||    
T  9167303 atctcttggacttctaagaaagcttgtttacttgaatgtaaaagattgtggaaatctaataagaatacccaacaacatattcggtcttagctctcttaaa 9167204  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaag 157  Q
    ||||||||||||| ||| ||||||||| ||||| |  || ||| |||||||||||||    
T  9167203 gatctaaatatgtgtggctgttccaaattgtttgacgattcaaggcatttgaagaag 9167147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 33286076 - 33285964
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||    
T  33286076 atctattggacttctaagaaaccttgtttacttgaatttaaaagattgcaaaaatcttgtaagcatacccaacaacatattcggtctaagctctcttaaa 33285977  T
Q  101 gatctaaatatgt 113  Q
     ||||| ||||||    
T  33285976 tatctatatatgt 33285964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 28869742 - 28869875
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||| | |  ||| | ||| |||||||  || |||||||||||||| |||||| ||||||||||    
T  28869742 atctattggacttctaagaaagcttgtatacttgaatttaaacggttgctataatatagtaagtgta-ccaacaacatattcggtcttaactctcttgaa 28869840  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaa 135  Q
    ||||||||||||| ||| |||||||||||||||||    
T  28869841 gatctaaatatgtctggctgttccaaagtgtttaa 28869875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 33263165 - 33262950
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |  | ||| | || || ||||||||||| |||| ||||||| ||||  |||||||||||    
T  33263165 atctattggacttctaagaaatcttgtttacttgaatttagaaaattgctataaccttgtaagcataccgaacaccatattcggtctgggctctcttgaa 33263066  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaa---------gcatgatataagtgaaagtgcatcacattcca 191  Q
    |||||||||||   | | ||||||||||||||||| || ||||| || ||| |||||||         |||| |||||| ||||||||||||||||||      
T  33263065 gatctaaatatcagttgctgttccaaagtgtttaacaaaccaatacacttggagaagaataaaaagaggcattatataactgaaagtgcatcacattctc 33262966  T
Q  192 gatcaatgtcctctgt 207  Q
    |||||| |||||||||    
T  33262965 gatcaacgtcctctgt 33262950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 9167128 - 9167084
Alignment:
Q  155 aagaagcatgatataagtgaaagtgcatcacattccagatcaatg 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  9167128 aagaagcatgatataagtgaaagtgcatcacattcccgatcaatg 9167084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33399557 - 33399519
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaattt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33399557 atctattggacttctaagaaagcttgtttacttgaattt 33399519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 28873096 - 28873174
Alignment:
Q  77 atattcagtcttagctctcttgaagatctaa---atatgtatggatgttccaaagtgtttaaaaatccaatgcatttga 152  Q
    |||||| |||||||||||||||||| |||||   |||||| ||||||||||||||  ||||| |||||||| |||||||    
T  28873096 atattcggtcttagctctcttgaagttctaattaatatgtgtggatgttccaaaggttttaacaatccaatacatttga 28873174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1183 - 1057
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |    ||| | |||||||||||||||||||||||||||||| |||||||||||||| ||    
T  1183 atctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctcttaaa 1084  T
Q  101 gatctaaatatgtatggatgttccaaa 127  Q
     |||||||||||| |||||||||||||    
T  1083 tatctaaatatgtctggatgttccaaa 1057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 1027 - 971
Alignment:
Q  151 gaagaagaagcatgatataagtgaaagtgcatcacattccagatcaatgtcctctgt 207  Q
    |||||| |||||||||||||| |||||| ||||||||| | |||||| |||||||||    
T  1027 gaagaataagcatgatataagggaaagtacatcacattgccgatcaacgtcctctgt 971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6929 - 6803
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |    ||| | |||||||||||||||||||||||||||||| |||||||||||||| ||    
T  6929 atctattggacttctaagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctcttaaa 6830  T
Q  101 gatctaaatatgtatggatgttccaaa 127  Q
     |||||||||||| |||||||||||||    
T  6829 tatctaaatatgtctggatgttccaaa 6803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 6773 - 6717
Alignment:
Q  151 gaagaagaagcatgatataagtgaaagtgcatcacattccagatcaatgtcctctgt 207  Q
    |||||| |||||||||||||| |||||| ||||||||| | |||||| |||||||||    
T  6773 gaagaataagcatgatataagggaaagtacatcacattgccgatcaacgtcctctgt 6717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 17440377 - 17440524
Alignment:
Q  5 attggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaagatc 104  Q
    |||||||||||||||||||||||||||||||| ||| | || ||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  17440377 attggacttctaagaaagcttgtttacttgaacttaaaagattgctataatctagtaagcatacccaacaacatattctgtcttagctctcttgaatatc 17440476  T
Q  105 taaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttga 152  Q
    ||||||||    | |||| ||||||||||| |||| ||| ||||||||    
T  17440477 taaatatgcgatgttgtttcaaagtgtttacaaattcaaggcatttga 17440524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 31498595 - 31498729
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||||||||||||||| |||||| |||||||||| | || ||||| ||||| |||||||||||||||||||||||  |||| |||| |||| ||    
T  31498595 atctattggacttctaagaaagattgtttccttgaatttaaaagattgcaagaatcttgtaagcatacccaacaacatatttggtctcagctttcttaaa 31498694  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaa 135  Q
    ||||||||||||| ||| |||||| ||||||||||    
T  31498695 gatctaaatatgtgtgggtgttccgaagtgtttaa 31498729  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 31157730 - 31157586
Alignment:
Q  12 ttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatat 111  Q
    |||||||||||||||||| | |||| ||  | || ||||||||||||||||||||||| ||||||||| |  |||| ||||||||| || |||||||| |    
T  31157730 ttctaagaaagcttgttttcatgaaattgaaagattgcaaaaatctagtaagcataccgaacaacatacttggtctcagctctcttaaatatctaaatct 31157631  T
Q  112 gtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaa 156  Q
     |  || ||||||||||||||||| ||||||| ||||||||||||    
T  31157630 ttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaa 31157586  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 31032615 - 31032510
Alignment:
Q  51 aaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcattt 150  Q
    |||||||| ||||||||||||||||||||||  |||| | ||||||| || |||||||| | |  || ||||||||||||||||| ||||||||||| ||    
T  31032615 aaaatctaataagcatacccaacaacatatttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaatt 31032516  T
Q  151 gaagaa 156  Q
    ||||||    
T  31032515 gaagaa 31032510  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 31148839 - 31148655
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    |||||||||  |||||||||||||||||||| |||||||  | || |||||||| ||| |||  ||||| || || |||||  |||| ||||||||||||    
T  31148839 atctattggggttctaagaaagcttgtttacctgaatttgaaagattgcaaaaaactaataataataccaaaaaatatatttggtctcagctctcttgaa 31148740  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaagcatgatataagtgaaagtgcatcacatt 188  Q
      ||||||| | |  || ||||||||||||||||| ||||||| ||| ||   || ||||||||||  |||||||||| |||||||||    
T  31148739 tgtctaaatctttcggggtgttccaaagtgtttaagaatccaaggcaatt---gaggaagcatgattcaagtgaaagttcatcacatt 31148655  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31028102 - 31027950
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||| ||||| ||||||||||| | |||||| ||  |  | |||||||||||| |||||||||| |||||||||||  |||| | ||||||| ||    
T  31028102 atctattggtcttctgagaaagcttgtattcttgaacttgaaaaattgcaaaaatctaataagcatacctaacaacatatttggtctcacctctcttaaa 31028003  T
Q  101 gatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaa 153  Q
     |||||||| | |   | ||||||||||||||||  ||| ||| |||||||||    
T  31028002 tatctaaatctttcctggtgttccaaagtgtttaccaatacaaggcatttgaa 31027950  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 31018022 - 31017926
Alignment:
Q  60 taagcatacccaacaacatattcagtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaa 156  Q
    ||||||||||||||| ||||||   ||| | ||||||| || |||||||| | | ||| |||||||||||||||||  |||||| ||||||||||||    
T  31018022 taagcatacccaacagcatatttgttctcacctctcttaaatatctaaatctttctgggtgttccaaagtgtttaactatccaaagcatttgaagaa 31017926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31503708 - 31503823
Alignment:
Q  1 atctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaa 100  Q
    ||||||||| ||||||| |||||||||||||||||| ||  | || |||||| || || ||||| ||| || |||||||||  |||| || | ||||||     
T  31503708 atctattggtcttctaacaaagcttgtttacttgaacttgaaagactgcaaacatataataagcctactcagcaacatatttggtctcagttgtcttgat 31503807  T
Q  101 gatctaaatatgtatg 116  Q
    ||||||||||| ||||    
T  31503808 gatctaaatatatatg 31503823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 31526944 - 31526766
Alignment:
Q  12 ttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaacaacatattcagtcttagctctcttgaagatctaaatat 111  Q
    |||||||||| |||||||||||||||||  | || |||||||||||||||| |||||| ||  || | ||  |||| | |||||||||  |||||||| |    
T  31526944 ttctaagaaaacttgtttacttgaatttggaagattgcaaaaatctagtaaccataccgaatgacttgtttggtctcacctctcttgagtatctaaatct 31526845  T
Q  112 gtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaagaagcatgatataagtgaaagtgcatcacattcc 190  Q
     | |||||||| ||| |  ||||| | | || |||||||||||||  |   ||||  |||||||||||| |||||||||    
T  31526844 ttctggatgttacaaggcatttaacacttcattgcatttgaagaattatattgattcaagtgaaagtgcgtcacattcc 31526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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