View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11133_low_70 (Length: 216)

Name: NF11133_low_70
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11133_low_70
NF11133_low_70
[»] chr6 (2 HSPs)
chr6 (67-216)||(34851531-34851680)
chr6 (121-201)||(21418250-21418330)
[»] chr5 (2 HSPs)
chr5 (83-158)||(17247705-17247780)
chr5 (141-201)||(35042086-35042146)
[»] chr3 (4 HSPs)
chr3 (127-202)||(36505576-36505651)
chr3 (135-201)||(53884399-53884465)
chr3 (141-202)||(52564541-52564602)
chr3 (103-163)||(48612891-48612951)
[»] chr7 (2 HSPs)
chr7 (137-202)||(2230488-2230553)
chr7 (135-202)||(24680860-24680927)
[»] chr8 (3 HSPs)
chr8 (77-153)||(11491293-11491369)
chr8 (135-202)||(999151-999218)
chr8 (110-150)||(5574343-5574383)
[»] chr4 (2 HSPs)
chr4 (83-184)||(8457753-8457856)
chr4 (103-203)||(8810652-8810752)
[»] chr2 (2 HSPs)
chr2 (139-203)||(13961281-13961345)
chr2 (137-202)||(30220697-30220762)
[»] chr1 (4 HSPs)
chr1 (104-200)||(31433571-31433667)
chr1 (121-175)||(5617693-5617746)
chr1 (104-202)||(35848492-35848590)
chr1 (83-153)||(40781410-40781480)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 34851531 - 34851680
Alignment:
Q  67 gaaacaactatctctgatactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctc 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||| ||||    
T  34851531 gaaacaactatctctgatactctcgttatgttcttactctctttattattttagtttttgtgttaatatatacatttctttgtaaatctttggttgtctc 34851630  T
Q  167 ataagttgttttaaaaatggttcttcaaataacatatgtgataaatgatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34851631 ataagttgttttaaaaatggttcttcaaataacatatgtgataaatgatt 34851680  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 21418330 - 21418250
Alignment:
Q  121 tttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaa-tggttcttcaaataacat 201  Q
    ||||||||| ||| | ||||||||||||||||| ||||||||||  |||| || ||||||||| ||||| ||||||||||||    
T  21418330 tttttgtgtcaatccttacatttctttgtatat-tttggttatccaataaattattttaaaaagtggttattcaaataacat 21418250  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 17247780 - 17247705
Alignment:
Q  83 atactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttg 158  Q
    ||||||||||| | |||||||||||| ||||| |||||||||||||| |||   ||||||| ||||||||||||||    
T  17247780 atactctcattgtattcttactctctctattactttaatttttgtgtcaatatctacatttatttgtatatctttg 17247705  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 35042146 - 35042086
Alignment:
Q  141 tttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacat 201  Q
    |||||||||||||||||| || || |||||||||| | | |||||||| ||||| ||||||    
T  35042146 tttctttgtatatctttgattgtcacataagttgtctcacaaatggttgttcaactaacat 35042086  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 36505651 - 36505576
Alignment:
Q  127 tgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    ||||||| | ||||||||||||| || |||| ||| |  ||||||||||||||||||||||| || ||||||||||    
T  36505651 tgttaatacctacatttctttgtctaactttagttgttccataagttgttttaaaaatggttgtttaaataacata 36505576  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 53884399 - 53884465
Alignment:
Q  135 catacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacat 201  Q
    ||||||||||||||||||| ||||||| || | |||||||| | |||| ||||| |||||| |||||    
T  53884399 catacatttctttgtatatatttggttgtcccgtaagttgtatcaaaattggttgttcaaaaaacat 53884465  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 52564602 - 52564541
Alignment:
Q  141 tttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    |||||||||| |||| ||||| || ||||||||||  || |||||||| |||||||||||||    
T  52564602 tttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacata 52564541  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 48612891 - 48612951
Alignment:
Q  103 ctctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttat 163  Q
    ||||||||||| ||||  |||| |||||||||  ||  |||||||||||||||||||||||    
T  48612891 ctctctttattgttttggttttcgtgttaatgtctatttttctttgtatatctttggttat 48612951  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 2230488 - 2230553
Alignment:
Q  137 tacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    ||||||||||||||||| |||| |||||  ||||||||||  ||||||| || |||||||||||||    
T  2230488 tacatttctttgtatatatttgattatcatataagttgttcaaaaaatgattattcaaataacata 2230553  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 24680927 - 24680860
Alignment:
Q  135 catacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    ||||||||||||| ||||| ||| ||| ||||||||||| | | |||| ||||| |||||||||||||    
T  24680927 catacatttctttctatattttttgttgtctcataagttatctaaaaagtggttgttcaaataacata 24680860  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 11491369 - 11491293
Alignment:
Q  77 tctctgatactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatat 153  Q
    ||||| ||||| ||||| | ||| || |||||||||||||||||||||| | ||||| | || ||||||||||||||    
T  11491369 tctctcatactttcattgtattcgtagtctctttattattttaatttttatattaatacctaaatttctttgtatat 11491293  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 999218 - 999151
Alignment:
Q  135 catacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    ||||||||||||| |||||  |||||| ||| ||||||||| | |||| ||||| |||||||||||||    
T  999218 catacatttctttctatattcttggttgtctaataagttgtataaaaagtggttgttcaaataacata 999151  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 5574343 - 5574383
Alignment:
Q  110 tattattttaatttttgtgttaatgcatacatttctttgta 150  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  5574343 tattattttgatttttgtgttaatacatacttttctttgta 5574383  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 8457753 - 8457856
Alignment:
Q  83 atactctcattatgttcttactctcttt--attattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaa 180  Q
    |||||| |||| |||||||||||||| |  |||  | || |||| ||| |||||| |||||||||||||||| |||||||| || |||||||||| | ||    
T  8457753 atactcacattgtgttcttactctctctctattgctctagttttcgtgctaatgcctacatttctttgtatacctttggttgtcccataagttgtctcaa 8457852  T
Q  181 aaat 184  Q
    ||||    
T  8457853 aaat 8457856  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 8810652 - 8810752
Alignment:
Q  103 ctctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    |||||| |||| |||| ||||| |||| ||   |||||||||||| |||||  |||||| |||||||||||||   |||| ||||| |||||||||||||    
T  8810652 ctctctctattgttttgattttcgtgtcaagatatacatttctttctatattcttggttgtctcataagttgtacaaaaagtggttgttcaaataacata 8810751  T
Q  203 t 203  Q
    |    
T  8810752 t 8810752  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 13961345 - 13961281
Alignment:
Q  139 catttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacatat 203  Q
    ||||||||||||||||||| ||| | | ||||||||||| |||||| ||| ||||||||| ||||    
T  13961345 catttctttgtatatctttagttgtattataagttgtttaaaaaatagttgttcaaataatatat 13961281  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 30220762 - 30220697
Alignment:
Q  137 tacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    |||||||||||||||||||| |||| |  ||||||||||  ||||||| ||  |||||||||||||    
T  30220762 tacatttctttgtatatcttgggttgttccataagttgtcctaaaaatagtggttcaaataacata 30220697  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 31433571 - 31433667
Alignment:
Q  104 tctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataaca 200  Q
    ||||| |||||||||| |||| |||| ||| | |||||| ||||||| |||| ||||| ||||||||||| |  || |||| ||| |||||||||||    
T  31433571 tctctctattattttagttttcgtgtcaatacctacattactttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataaca 31433667  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 5617746 - 5617693
Alignment:
Q  121 tttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgt 175  Q
    ||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||||    
T  5617746 tttttgtgttaatacatacatttctttgtatat-tttggttgtcacataaattgt 5617693  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 35848492 - 35848590
Alignment:
Q  104 tctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaatggttcttcaaataacata 202  Q
    ||||| |||| |||| ||||| |||| ||  ||||||||||||| |||||  |||||| || ||||||||||   |||| ||||| |||||||||||||    
T  35848492 tctctctattgttttgattttcgtgtcaagacatacatttctttctatattcttggttgtcccataagttgtacaaaaagtggttgttcaaataacata 35848590  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 40781410 - 40781480
Alignment:
Q  83 atactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatat 153  Q
    |||||| |||| |||| |||||||| || ||||||| ||||||||||||||   || ||||||||||||||    
T  40781410 atactcacattgtgtttttactctcgttgttattttgatttttgtgttaatatttatatttctttgtatat 40781480  T

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