View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11133_low_71 (Length: 215)
Name: NF11133_low_71
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_71 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40433644 - 40433858
Alignment:
| Q |
1 |
ttgtcaaatagcggtgatatagaactgtagtgtagtggaatttgaaccaaacgatattttccacaatccgcgattgacaagaccgcctgttattaacact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40433644 |
ttgtcaaatagcggtggtatagaactgtagtgtagtggaatttgaaccaaacgatattttccacaatccgcgattgacaagaccgcctgttattaacact |
40433743 |
T |
|
| Q |
101 |
ttattcattacatccattgattttatctctagaataaaactaacgaatgttttattttgatgggttttagagtatgccaaagcatattgagcaccgaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40433744 |
ttattcattacatccattgattttatctctagaataaaactaatgaatgttttattttgatgggttttagagtatgccaaagcatattgagcaccgaggg |
40433843 |
T |
|
| Q |
201 |
ttcttcatttccaga |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40433844 |
ttcttcatttccaga |
40433858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University