View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_72 (Length: 204)
Name: NF11133_low_72
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28605487 - 28605295
Alignment:
| Q |
1 |
tcaatgttccactccttatcaacatgtatatatgattagaaagacacataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgac |
100 |
Q |
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| T |
28605487 |
tcaatgctccactccttatcaacatgtatatatgattagaaagacacataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgac |
28605388 |
T |
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| Q |
101 |
actgtcaaaggacattctttttcaagagcagctttgatggtgctcacatacttgaagtttctcatcccaaaacttctctccgctctctgctcc |
193 |
Q |
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| T |
28605387 |
actgtcaaaggacattctttttcaagagcagctttgatggtgctcacatacttgaagtttctcatcccaaaacttctctccgctgtctgctcc |
28605295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 28654891 - 28654760
Alignment:
| Q |
46 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
145 |
Q |
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||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||| || |
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| T |
28654891 |
acataccattgcaataccgtctctagcagaaagagcaacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttc |
28654792 |
T |
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| Q |
146 |
acatacttgaagtttctcatcccaaaacttct |
177 |
Q |
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| T |
28654791 |
acatacttgaaatttctcatcccaaaacttct |
28654760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 28635610 - 28635463
Alignment:
| Q |
46 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
145 |
Q |
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||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || | ||| ||||||||||| || |
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| T |
28635610 |
acataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcgacagctgctttgatggtattc |
28635511 |
T |
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| Q |
146 |
acatacttgaagtttctcatcccaaaacttctctccgctctctgctcc |
193 |
Q |
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||||||||||| ||||||||||||||||||||| ||| | |||||||| |
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| T |
28635510 |
acatacttgaaatttctcatcccaaaacttctcaccgatgtctgctcc |
28635463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 28663293 - 28663159
Alignment:
| Q |
46 |
acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctc |
145 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| || | ||||||||||||||| | |
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| T |
28663293 |
acataccatggcaattccgtctctagcggaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggttttt |
28663194 |
T |
|
| Q |
146 |
acatacttgaagtttctcatcccaaaacttctctc |
180 |
Q |
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|||||||||||||||| |||||| |||||||||| |
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| T |
28663193 |
acatacttgaagtttcgcatcccggaacttctctc |
28663159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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