View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11133_low_8 (Length: 585)
Name: NF11133_low_8
Description: NF11133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11133_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 13225449 - 13226002
Alignment:
| Q |
18 |
acaaacacttacaatgcttccaaatttaacttatcttgatttaagcaacaacaatttcaaaggggaaattcctcaagaatttgggagcctacaatatcta |
117 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13225449 |
acaaacacttacaatgcttccaaatttaacctaccttgatttaagcaacaacaatttcaaaggggaaattcctcaagaatttgggagcctacaatatcta |
13225548 |
T |
|
| Q |
118 |
aacatctcaggaaactcttttgaaagcgaattacctaacagcatttggaattcaagtaatcttcagattttctcagcttcattctcgaaaatcaccggtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13225549 |
aacatctcaggaaactcttttgaaagcgaattacctaacagcatttggaattcaagtaatcttcagattttctcagcttcattctcgaaaatcaccggtc |
13225648 |
T |
|
| Q |
218 |
aaattcccgatttttctgattgcaaatcgatctacaagatcgaattacaaggaaattcaatcaccggcacaattccatggaacattggtgattgcgaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13225649 |
aaattcccgatttttctgattgcaaatcgatctacaagatcgaattacaaggaaattcaatcaccggcacaattccatggaacattggtgattgcgaaaa |
13225748 |
T |
|
| Q |
318 |
actgcttcagttaaacctaagcaaaaacaacctcaccggaatcattccttatgaaatctcaactcttccttcaatcaccgacgttgatctctcgcaaaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13225749 |
actgcttcagttaaacctaagcaaaaacaacctcaccggaatcattccttacgaaatctcaactcttccttcaatcaccgacgttgatctctcgcaaaac |
13225848 |
T |
|
| Q |
418 |
tcactcaccggaacaattccatcaagcttcaacaattgttcaactctcgaaaatttcaacatcagtttcaattcccttaccggagcaatcccttcctccg |
517 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13225849 |
tcactcactggaacaattccatcaagcttcaacaattgctcaactctcgaaaatttcaacatcagtttcaattcccttaccggagcaatcccttcctccg |
13225948 |
T |
|
| Q |
518 |
gtgtcttccaaagcctccatccttcttcctactccggcaatgaaaatctctgtg |
571 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13225949 |
gcgtcttccaaagcctccatccttcttcctactccggcaatgaaaatctctgtg |
13226002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 13148324 - 13147932
Alignment:
| Q |
18 |
acaaacacttacaatgcttccaaatttaacttatcttgatttaagcaacaacaatttcaaaggggaaattcctcaagaatttgggagcctacaatatcta |
117 |
Q |
| |
|
|||||| |||||| || ||||||||||||| || || ||||||||||||||||||||||| || ||||||| | | |||| | | ||||||||| ||| |
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|
| T |
13148324 |
acaaacccttacactggttccaaatttaacctacctagatttaagcaacaacaatttcaatggcaaaattccactaaaattagaaaacctacaataccta |
13148225 |
T |
|
| Q |
118 |
aacatctcaggaaactcttttgaaagcgaattacctaacagcatttggaattcaagtaatcttcagattttctcagcttcattctcgaaaatcaccggtc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||| ||| || || |||||||||||||||| || |||||||||||| |
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| T |
13148224 |
aacatctcaggaaactcatttgaaagcaatttaccaaacagcatttggaattcaactaacctacaatttttctcagcttcattttccaaaatcaccggta |
13148125 |
T |
|
| Q |
218 |
aaattcccgatttttctgattgcaaatcgatctacaagatcgaattacaaggaaattcaatcaccggcacaattccatggaacattggtgattgcgaaaa |
317 |
Q |
| |
|
||||||| |||| || |||| || || ||| |||||||||||||||||||||||||| ||| || |||||| ||||||| |||||||| ||||| |
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| T |
13148124 |
gaattcccaatttcattggttgccaaaatatttaccggatcgaattacaaggaaattcaatcaacggaaccattccaaggaacatcggtgattgtgaaaa |
13148025 |
T |
|
| Q |
318 |
actgcttcagttaaacctaagcaaaaacaacctcaccggaatcattccttatgaaatctcaactcttccttcaatcaccgacgttgatctctc |
410 |
Q |
| |
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||| ||||||| || | || |||||| | || || |||| ||| ||| |||||||| | | ||||||||||| |||| ||||||||||| |
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|
| T |
13148024 |
actaattcagttgaatatcagtaaaaactatctgacaggaaccatacctcatgaaatcacgaagattccttcaatctccgaagttgatctctc |
13147932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 13314919 - 13314817
Alignment:
| Q |
18 |
acaaacacttacaatgcttccaaatttaacttatcttgatttaagcaacaacaatttcaaaggggaaattcctcaagaatttgggagcctacaatatcta |
117 |
Q |
| |
|
|||||| ||||| |||||||| || ||||| | |||||| ||||||||||||||||||| || ||||||| ||| |||| |||| ||||| ||| ||| |
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|
| T |
13314919 |
acaaacccttaccatgcttcctaaattaacattccttgatctaagcaacaacaatttcaatggaaaaattccacaaaaattagggaacctacgataccta |
13314820 |
T |
|
| Q |
118 |
aac |
120 |
Q |
| |
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||| |
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|
| T |
13314819 |
aac |
13314817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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