View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11134_high_12 (Length: 360)
Name: NF11134_high_12
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_12 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 75368 - 75026
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75368 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
75269 |
T |
|
| Q |
101 |
tttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75268 |
tttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttg |
75169 |
T |
|
| Q |
201 |
aatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtgacatacgtatcttctcatcatatgtatagaaaaatgtattgccattga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75168 |
aatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtcacatacgtatcttctcatcatatgtatagaaaaatgtattgccattga |
75069 |
T |
|
| Q |
301 |
tgatcactcttagaggacattgaggatctgtcaatggagatac |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75068 |
tgatcactcttagaggacattgaggatctgtcaatggagatac |
75026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 29689080 - 29689393
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||||||||||||||| | ||||||| |||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
29689080 |
taaaatgaatgatatacttacttcaaaatcccgagtgtaacacaatgttagcatcattctctggattggtgaatctaatatccttcatgttactcttctc |
29689179 |
T |
|
| Q |
101 |
tttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttg |
200 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| || | ||| |
|
|
| T |
29689180 |
tttcaatacatggattccactaaacatgaatgggaatccaaagtcaacctctgcatggttccatttattttctaaaagtgctttatccatattaccattg |
29689279 |
T |
|
| Q |
201 |
aatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtg---acatacgtatcttctcatcatatgtatagaaaaatgtattgccat |
297 |
Q |
| |
|
|| | |||| || |||||||||||||| |||||||| | | | |||||| || || |||||| | ||| ||||||||||||||||||| | | |
|
|
| T |
29689280 |
aagtattccacttgcatatgaaaaagatgcaaatgatatgtgtccggtcgtgaacacctatcaatcttcctaccatgtgtatagaaaaatgtattgtcgt |
29689379 |
T |
|
| Q |
298 |
tgatgatcactctt |
311 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29689380 |
tgatgatcactctt |
29689393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29718260 - 29718503
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||| ||||||| |||| || |
|
|
| T |
29718260 |
taaaatgaatgatatacttacttcaacatcccgagtgtaacacaatgttagcatcattcgctgggttggtgaatcgaatatcctccatgctatttttttc |
29718359 |
T |
|
| Q |
101 |
tttcaatatatggattccactatacatgaatgggga---tccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcg |
197 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| || ||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29718360 |
tttcaatacatggactccactatacatgaatgcagagacaccaaaataaatctctgcatggttccacttattttctaaaagtgctttgtccatattatca |
29718459 |
T |
|
| Q |
198 |
ttgaatttttcccttttcatatgaaaaagatttaaatgatacat |
241 |
Q |
| |
|
||||| || ||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
29718460 |
ttgaagttctccgtttgcatatgaaaaagatgcaaatgatacat |
29718503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 29767101 - 29767296
Alignment:
| Q |
46 |
tgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtc |
145 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
29767101 |
tgttagcatcattctctgggttggtgaatcgaatatctttcatgctacttttctctttcaatacatggattccactaaacatgaatgggaatccaaagtc |
29767200 |
T |
|
| Q |
146 |
aagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacat |
241 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||| | |||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
29767201 |
aacctctgcatggttccatttattttctaaaagtgccttgtccatattatcattgaagtattccatttgcatatgaaaaagatgcaaatgatacat |
29767296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 318
Target Start/End: Complemental strand, 29472125 - 29471870
Alignment:
| Q |
60 |
tctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggt |
159 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
29472125 |
tctgggttggtgaattgaatatccttcatgttacttttctttttcaatacatggattccactatacatgaatgggaacccaaagtcaacctctgcatggt |
29472026 |
T |
|
| Q |
160 |
tccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtgacatacg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||||| || |||||||| || | |||| | ||| |
|
|
| T |
29472025 |
tccacttattttctaaaagtgctttgtccatattattattcaatttttccatttgcatatgaaaaagatgtagatgatacactt---ctggtgataaacg |
29471929 |
T |
|
| Q |
260 |
tatcttctcatcatatgtatagaaaaatgtattgccattgatgatcactcttagaggac |
318 |
Q |
| |
|
| | || ||| ||| ||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
29471928 |
tttattttcaccatgcctatagaaaaatgtatcaccattgatgatcactcttacaggac |
29471870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 29662668 - 29662935
Alignment:
| Q |
43 |
caatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaa |
142 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| || | ||||||| ||||||| |
|
|
| T |
29662668 |
caatattagcatcattctctgggttggtgaatcgaatatcattcatgttacttttctctttcaatacatggattccac-attctggaatgggaatccaaa |
29662766 |
T |
|
| Q |
143 |
gtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacatt |
242 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||| |||||||||| || |
|
|
| T |
29662767 |
gtcaacctctgcatggttccacttattttctaaaagtgctttgtccatatcatcattgaatttttcagtttgcatatgaaaaagatgtaaatgatacgtt |
29662866 |
T |
|
| Q |
243 |
ttcagtcgtgacatacgtatcttctcatcatatgtatagaaaaatgtattgccattgatgatcactctt |
311 |
Q |
| |
|
| | | |||||||| ||| ||||| || || |||||| |||||||| |||||||||| ||||||| |
|
|
| T |
29662867 |
tcccgcagtgacataggtagaatctcaccacatttatagacaaatgtatatccattgatgaccactctt |
29662935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 29711646 - 29711864
Alignment:
| Q |
5 |
atgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttc |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| |||| | |||| |||||||| |||| || |||||| |||||||||||||| |
|
|
| T |
29711646 |
atgaatgatatacttacttcaacatcccgagtgtaacacaatgttggcatcattctc-----tggtgaattgaatgtctttcatgttacttttctctttc |
29711740 |
T |
|
| Q |
105 |
aatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatt |
204 |
Q |
| |
|
|||| |||||||||||||| | ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| | |
|
|
| T |
29711741 |
aatacatggattccactattctggaaagggaatccaaagtcaacctctgcatggttccacttattttctaaaagtgctttgtctatattatcattgaaat |
29711840 |
T |
|
| Q |
205 |
tttcccttttcatatgaaaaagat |
228 |
Q |
| |
|
||||| ||| || ||||||||||| |
|
|
| T |
29711841 |
tttccatttgcaaatgaaaaagat |
29711864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29799781 - 29800020
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcat-tagtctctgggttggtgaatcgaatatccttcatgctacttttct |
99 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | || |||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
29799781 |
taaaatgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgttacttttag |
29799880 |
T |
|
| Q |
100 |
ctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgtt |
199 |
Q |
| |
|
||||||||| |||||||||||| | |||| | ||||||||| || || ||||||||||||||||||||||||||||| ||| |||||| |||| || |
|
|
| T |
29799881 |
ctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaaagtgatttatccatattatcatt |
29799980 |
T |
|
| Q |
200 |
gaatttttcccttttcatatgaaaaagatttaaatgatac |
239 |
Q |
| |
|
||| |||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
29799981 |
gaagttttccgtttgcatatggaaaagatgcaaatgatac |
29800020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28487368 - 28487608
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcat-tagtctctgggttggtgaatcgaatatccttcatgctactttt-c |
98 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | || |||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
28487368 |
taaaatgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgttacttttag |
28487467 |
T |
|
| Q |
99 |
tctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgt |
198 |
Q |
| |
|
|||||||||| |||||||||||| | |||| | ||||||||| || || ||||||||||||||||||||||||||||| ||| |||||| |||| | |
|
|
| T |
28487468 |
tctttcaatacatggattccacttttatggaatttgaatccaaagtaaacctttgcatggttccacttattttctaaaagtgatttatccatattatcat |
28487567 |
T |
|
| Q |
199 |
tgaatttttcccttttcatatgaaaaagatttaaatgatac |
239 |
Q |
| |
|
|||| |||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
28487568 |
tgaagttttccgtttgcatatggaaaagatgcaaatgatac |
28487608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 29755593 - 29755789
Alignment:
| Q |
42 |
acaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaa |
141 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||||||||| | || ||||||||||||||| |||||||||||| | | |||| | |||||| |
|
|
| T |
29755593 |
acaatgttagcatcattctctggattggtgaatcgaatatccttcaagttaattttctctttcaatacatggattccacttttaaggaatttgaatccaa |
29755692 |
T |
|
| Q |
142 |
agtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgata |
238 |
Q |
| |
|
|| || ||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||| ||| |||||||||||||| |||||||| |
|
|
| T |
29755693 |
agagaacctccgcatggttccacttattttctgaaagtgctttgtccatattatcattgaagttttccatttgcatatgaaaaagatgcaaatgata |
29755789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 59 - 312
Target Start/End: Original strand, 29671246 - 29671502
Alignment:
| Q |
59 |
ctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatgg |
158 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||||| ||| ||| |||||||| | | |||||| ||||||| |||| |||||||||| |
|
|
| T |
29671246 |
ctctggattggtgaatctaatatccttcatgttacttttctctttcgatacatgaattccacttttctggaatggtaatccaaaatcaacctctgcatgg |
29671345 |
T |
|
| Q |
159 |
ttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcgtga---ca |
255 |
Q |
| |
|
|||||| ||||||| |||||| |||| |||||| |||| || || |||||| |||||||||||||||||| ||||||||||| ||||| |||| | |
|
|
| T |
29671346 |
ttccacatattttcaaaaagtactttttccatattatcattaaagttttccattttcatatgaaaaagatgcaaatgatacatattcagcggtgatttcg |
29671445 |
T |
|
| Q |
256 |
tacgtatcttctcatcatatgtatagaaaaatgtattgccattgatgatcactctta |
312 |
Q |
| |
|
||| |||||| | ||| ||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
29671446 |
tacccatcttcaaaccatctgtgtagataaatgtatttccattgatgatcactctta |
29671502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 29741318 - 29741397
Alignment:
| Q |
96 |
ttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaa |
175 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29741318 |
ttctctttcaatacatggattccgctatacatgaacgggaatccaaagtcaacctctgcatggttccacttattttctaa |
29741397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 29704844 - 29704953
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatg-ttagcatt----agtctctgggttggtgaatcgaatatccttcatgctactt |
95 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||||| ||||||| | | |||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
29704844 |
taaaatgaatgatatacttacttcaacatcttggctgtaacacaatggttagcatcgttaattttctgggttactgaatcaaatatccttcatgttactt |
29704943 |
T |
|
| Q |
96 |
ttctctttca |
105 |
Q |
| |
|
|||||||||| |
|
|
| T |
29704944 |
ttctctttca |
29704953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 29767329 - 29767370
Alignment:
| Q |
271 |
catatgtatagaaaaatgtattgccattgatgatcactctta |
312 |
Q |
| |
|
||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
29767329 |
catgtgtatagaaaaatgtatttccgttgatgatcactctta |
29767370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 619098 - 618871
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
100 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||| | |||||||||||||||||| | |||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
619098 |
taaaatgaatgatgtacttactttaacatcccgggtgtaacacaatgttagcatcaatctctgggttactgaatcgaatatctttcatgttacttttctc |
618999 |
T |
|
| Q |
101 |
tttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcgttg |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
618998 |
ttccaatacatggattccactatacatgaatgggaatccaaagtcaacctctgcatgattccacttattttctaaaagtgctttgtccatattatcattg |
618899 |
T |
|
| Q |
201 |
aatttttcccttttcatatgaaaaagat |
228 |
Q |
| |
|
|| | | | ||| |||||||||||||| |
|
|
| T |
618898 |
aagtacttcatttgcatatgaaaaagat |
618871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12592631 - 12592388
Alignment:
| Q |
1 |
taaaatgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctc |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||| | || |||||||||||||||||||||||| |||| | |||| || |
|
|
| T |
12592631 |
taaaatgaatgatatacttactttaacattccgagtgtaacacaatgttagcatcactcgctgggttggtgaatcgaatatcctccatgttgtttttatc |
12592532 |
T |
|
| Q |
101 |
tttcaatatatggattccactatacatgaatgggga---tccaaagtcaagctctgcatggttccacttattttctaaaagtgctttgtccatagtatcg |
197 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12592531 |
tttcaatacatggattccactatacatgaatgcagagacaccaaaataaacctctgcatggttccacttattttctaaaagtgctttgtccatattatca |
12592432 |
T |
|
| Q |
198 |
ttgaatttttcccttttcatatgaaaaagatttaaatgatacat |
241 |
Q |
| |
|
||||| || ||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
12592431 |
ttgaagttctccatttgcatatgaaaaagatgcaaatgatacat |
12592388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 324
Target Start/End: Original strand, 208618 - 208883
Alignment:
| Q |
62 |
tgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatggttc |
161 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| | || ||||| | |||||| |||||||||||||| ||| |
|
|
| T |
208618 |
tgggttgatgaatcgaatatcgttcatgctacttctctctttcaatacatggattccactttccaggaatgagagtccaaaatcaagctctgcatgattc |
208717 |
T |
|
| Q |
162 |
cacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatgatacattttcagtcg---tgacatac |
258 |
Q |
| |
|
|||||||||||| | ||||||||||||||| | || ||||| |||||| ||| |||||||||||||| ||||||||||| | | | || |||| || |
|
|
| T |
208718 |
cacttattttctgagagtgctttgtccatattttcattgaagttttccatttgcatatgaaaaagatgcaaatgatacatgtccggccgtgatgacctat |
208817 |
T |
|
| Q |
259 |
gtatcttctcatcatatgtatagaaaaatgtattgccattgatgatcactcttagaggacattgag |
324 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
208818 |
ctatcttcgaatcatgtgtatagaaaaatgtattgccattgatgaccactcttacaggacgttgag |
208883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 5918229 - 5918407
Alignment:
| Q |
58 |
tctctgggttggtgaatcgaatatccttcatgctacttttctctttcaatatatggattccactatacatgaatggggatccaaagtcaagctctgcatg |
157 |
Q |
| |
|
||||||| ||||||||| | |||||| |||| ||||||||||||||||| | |||||||||||| | |||| | |||||||||| | |||| |
|
|
| T |
5918229 |
tctctggattggtgaattggatatccatcatactacttttctctttcaacacatggattccacttttatggaattcaaacccaaagtcaactaccacatg |
5918328 |
T |
|
| Q |
158 |
gttccacttattttctaaaagtgctttgtccatagtatcgttgaatttttcccttttcatatgaaaaagatttaaatga |
236 |
Q |
| |
|
|||||||| |||||||||||||||| |||| | ||| ||||||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
5918329 |
gttccactcattttctaaaagtgctgcatccacatcatcattgaatttttctatttgcatatgaaaaatatgtaaatga |
5918407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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