View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_high_13 (Length: 355)
Name: NF11134_high_13
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 345
Target Start/End: Complemental strand, 29274990 - 29274669
Alignment:
| Q |
24 |
gaattagaaagatcaagcaagtgttccatgttcgaagtcctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcttcacaagctt |
123 |
Q |
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| T |
29274990 |
gaattagaaagatcaagcaagtgtttcatgttcgaagtcctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcctcacaagctt |
29274891 |
T |
|
| Q |
124 |
ctaagatcaaatcaagctctgccacatcaagtgctgccggcttctccaccaacacatgcttcttcttattcgcggcagcaaccgcccacctcacgtgcag |
223 |
Q |
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| T |
29274890 |
ctaagatcaaatcaagctctgccacatcaagtgctgccggcttctccaccaacacatgcttcttcttattcgcagcagcaaccgcccacctcacgtgcag |
29274791 |
T |
|
| Q |
224 |
actagtcgggagaggaatgtacactgcatccacacctgaatcttccacaacctcatcatagctaccatagattcttacgctggctggtaaactgttttcg |
323 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29274790 |
actcgttgggagaggaatgtacactgcatccacacctgaatcttccacaacctcatcatagctaccatagattcttacgctggctggtaaactgttttcg |
29274691 |
T |
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| Q |
324 |
actgcaaattttgctgcctttg |
345 |
Q |
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|||||||||||||||||||||| |
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| T |
29274690 |
actgcaaattttgctgcctttg |
29274669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 24579200 - 24579139
Alignment:
| Q |
63 |
ctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcttcacaagcttc |
124 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||| |
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| T |
24579200 |
ctagggtgatgcaaccacattgaaccatccataaactgcactccattagtctcacaagcttc |
24579139 |
T |
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