View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_high_14 (Length: 326)
Name: NF11134_high_14
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 44976478 - 44976178
Alignment:
| Q |
18 |
caagtatcgtggtttgtgagataaaggtcggatgatgcccagatctaaatgacgttctccgacattgaaggtgnnnnnnngcttgtacttggtggatcta |
117 |
Q |
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| T |
44976478 |
caagtatcgtggtttgtaagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgaaggtgtttttttgcttgtacttggtggatcta |
44976379 |
T |
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| Q |
118 |
aaatttaaatggccatggtgtggttgaacagaaggtttatggtggattaagaggtggatttggtgttttgttaaagtcataatgagagtttgacaataaa |
217 |
Q |
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| T |
44976378 |
aaatttaaatggccatggtgtggttgaacagaaggtttatggtggattaaaaggtggatttagtgttttgttaaagtcataatgagagattgacaacaaa |
44976279 |
T |
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| Q |
218 |
tttgaagttgagtggttgttgatggaggtggattaagggtggatgaagggatggtcctggtggtttgaactggggagatagatcaattgcttccctatgc |
317 |
Q |
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| T |
44976278 |
tttgaagttgagtggttgttgatggaggtggatcaagggtggatgaagggatggtcctggtggtttgaactggggagatagatcaattgcttccctatgc |
44976179 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
44976178 |
t |
44976178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 51662053 - 51661763
Alignment:
| Q |
18 |
caagtatcgtggtttgtgagataaaggtcggatgat--gcccagatctaaatgacgttctccgacattgaaggtgnnnnnnngcttgtacttggtggatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
51662053 |
caagtatcgtggtttgtgagataaaggtcggatgatatgcccggacctaaatgacgttctccggcattgatggtgtttttttgcttgtactgggtggatc |
51661954 |
T |
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| Q |
116 |
taaaatttaaatggccatggtgtggttgaacagaaggtttatggtggattaagaggtggatttggtgttttgttaaagtcataatgagagtttgacaata |
215 |
Q |
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| T |
51661953 |
taaaatttaaatggccatggtgtggttgaacagaaggtttatggtggatt------------tggtgttttgttaaagtcataatgagagattgacaaca |
51661866 |
T |
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| Q |
216 |
aatttgaagttgagtggttgttgatggaggtggattaagggtggatgaagggatggtcctggtggtttgaactggggagatagatcaattgcttccctat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51661865 |
aatttgaagttgagtggttgttgatggaggtggattaagggtggatgaagggatggtcctggtggtttgaactggggagatagatcaattgcttccctat |
51661766 |
T |
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