View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11134_high_19 (Length: 247)
Name: NF11134_high_19
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 36937063 - 36937248
Alignment:
| Q |
1 |
ccatagttgaagctaaccacgtcatcgtctagtaaatttaagagtgatcagtgatgtgatcatggtttgatacttaggagagatgcatgactactattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36937063 |
ccatagttgaagctaaccacgtcatcgtctagtaaatttaagagtgatcagtgatgtgatcatggtttgatacttaggagagatgcatgactactattca |
36937162 |
T |
|
| Q |
101 |
tcataaaagatgaagatgaagaaagaggagaaagattgggataaagagaaaaggtgtggaatctaacgtgaataagctatcataat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36937163 |
tcataaaagatgaagatgaagaaagaggagaaagattgggataaagagaaaaggtgtggaatctaacgtgaataagctatcataat |
36937248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 36937263 - 36937299
Alignment:
| Q |
183 |
taatccaatgtttgttgttaacaagactatgatggcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36937263 |
taatccaatgtttgttgttaacaagactatgatggcc |
36937299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University