View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_high_2 (Length: 540)
Name: NF11134_high_2
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 532
Target Start/End: Complemental strand, 11225141 - 11224629
Alignment:
| Q |
20 |
tcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttttcaatcaatttgaagaatctttttcaattaaaca |
118 |
Q |
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| T |
11225141 |
tcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcagaatctttttcaattaaaca |
11225042 |
T |
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| Q |
119 |
atcaacttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcacagaatatttcaacaatgtgtaactcgtatacta |
218 |
Q |
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|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
11225041 |
atcagcttacaatcaggtaaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatacta |
11224943 |
T |
|
| Q |
219 |
catgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctatagcttttccttcttcgttcacataatttccatcattctttattaaagt |
318 |
Q |
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| T |
11224942 |
catgcacaacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataatttccatcattctttattaaagt |
11224843 |
T |
|
| Q |
319 |
tgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgtt |
418 |
Q |
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| T |
11224842 |
tgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgtt |
11224743 |
T |
|
| Q |
419 |
gggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccaacatgtgggactttaagcttcttacgattt |
518 |
Q |
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| T |
11224742 |
gggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttcttacgattt |
11224643 |
T |
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| Q |
519 |
tcggtattcttctc |
532 |
Q |
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|||||||||||||| |
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| T |
11224642 |
tcggtattcttctc |
11224629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 11225489 - 11225243
Alignment:
| Q |
25 |
tactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttttcaatcaatttgaagaatctttttcaattaaacaatcaa |
123 |
Q |
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||||||||| ||| ||| |||||| ||| ||| || |||||||||||||| | || |||||||||||| ||| |||||| |||| ||||||| ||||| |
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| T |
11225489 |
tactacatgcacaacatttaatcaaccaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaatccttttgaattaaataatcag |
11225390 |
T |
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| Q |
124 |
cttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactcgtatactacatg |
222 |
Q |
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| T |
11225389 |
cttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatg |
11225290 |
T |
|
| Q |
223 |
cacaacatttaatcaacttaacacacccaaaaatatacttaaagctat |
270 |
Q |
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| T |
11225289 |
cataacatttaatcaa-tcaacacacccaaaagtatatttacagctat |
11225243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 11225592 - 11225433
Alignment:
| Q |
112 |
ttaaacaatcaacttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactc |
210 |
Q |
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|||||||||||||||||||||||| | |||| ||||||||| || ||| |||||||||||| ||||||||| |||||| || |||| |||| ||||| | |
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| T |
11225592 |
ttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacac |
11225493 |
T |
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| Q |
211 |
gtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctata |
271 |
Q |
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| T |
11225492 |
ttgtactacatgcacaacatttaatcaac-caacacacccaaaagtatacttacagctata |
11225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 11225261 - 11225174
Alignment:
| Q |
61 |
aaagtatacttacatccatctttttcaatcaatttgaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaaca |
148 |
Q |
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| T |
11225261 |
aaagtatatttacagctatctttttccatcagtttgcagaatccttttcaattaaacaaccaacttacattcaggtacacatcaaaca |
11225174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 11225171 - 11225111
Alignment:
| Q |
179 |
agttcacagaatatttcaacaatgtgtaactcgtatactacatgcacaacatttaatcaac |
239 |
Q |
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| T |
11225171 |
agttcgcagaatttatcaacaatgtgtaactcttatactacatgaacaacatataatcaac |
11225111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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