View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11134_high_5 (Length: 463)

Name: NF11134_high_5
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11134_high_5
NF11134_high_5
[»] chr3 (4 HSPs)
chr3 (24-452)||(39935656-39936084)
chr3 (115-208)||(48437538-48437631)
chr3 (160-255)||(50338261-50338356)
chr3 (301-349)||(41743851-41743899)
[»] chr4 (3 HSPs)
chr4 (158-237)||(29738143-29738222)
chr4 (160-255)||(9684906-9685001)
chr4 (178-255)||(7544725-7544803)
[»] chr6 (2 HSPs)
chr6 (160-255)||(31188072-31188167)
chr6 (160-255)||(31199916-31200011)
[»] chr2 (1 HSPs)
chr2 (162-249)||(7958809-7958896)
[»] chr7 (2 HSPs)
chr7 (300-458)||(19367750-19367907)
chr7 (140-255)||(16831737-16831852)
[»] chr1 (1 HSPs)
chr1 (204-255)||(26428904-26428955)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Original strand, 39935656 - 39936084
Alignment:
Q  24 aggaaataactggtttttaatatggattgtaaaataatctggatattttcaaaaaccgaaccatatatgattataaatcggttttgtaagcataaccggt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  39935656 aggaaataactggtttttaatatggattgtaaaataatctggatattttcaaaaaccgaaccatatatgattataaatcgattttttaagcataatcggt 39935755  T
Q  124 tatttatccataacaatatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatg 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39935756 tatttatccataacaatatttatatctagtttcgtgaccagttcataataaaatatggtcatggttatgaatccaaattcacataaatggtttataaatg 39935855  T
Q  224 aatatggtttggttggtcaaaatatccgaccacgcatatcctataagcaaatgccactgcaaattccaactatgttgatgtcatacctacaatttcgaac 323  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39935856 aatatggtttggttggtcaaaatatccgaccacgcacaccctataagcaaatgccaatgcaaattccaactatgttgatgtcatacctacaatttcgaac 39935955  T
Q  324 aacggaaagttgtatttattaattttgtacaatgttatccataaccaacacaattgaaaacatgttcaatggctgaaatgaatctggatgcgcccaacaa 423  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||    
T  39935956 aacggaaagttgtatttattagttttgtacaatattatccataaccaacacaattgaaaacatgttcaatagctggaatgaatctgaatgcgcccaataa 39936055  T
Q  424 atatctctcaatacatctaagtcgtctct 452  Q
    ||||||||| |||||| ||||||||||||    
T  39936056 atatctctccatacatttaagtcgtctct 39936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 48437538 - 48437631
Alignment:
Q  115 ataaccggttatttatccataacaatatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacata 208  Q
    ||||||| ||||||||||||||  |||||||||||  ||||||||||   || ||| ||||||| |||| |||||||| |||||||| ||||||    
T  48437538 ataaccgattatttatccataatcatatttatatccggtttcgtgactaatttatattaaaatacggtcatggttatggatccaaatccacata 48437631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 50338356 - 50338261
Alignment:
Q  160 accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca 255  Q
    ||||||| | |||||||||||||  |||||| |||||||||   | ||||||   ||||| ||| |||||||||||| ||||||||||||||||||    
T  50338356 accggtttacaataaaatatggttatggttaggaatccaaaactatataaattacttatatatggatatggtttggtcggtcaaaatatccgacca 50338261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 41743899 - 41743851
Alignment:
Q  301 atgtcatacctacaatttcgaacaacggaaagttgtatttattaatttt 349  Q
    |||||||||||||||||| || ||| | ||| |||||||||||||||||    
T  41743899 atgtcatacctacaattttgagcaatgaaaatttgtatttattaatttt 41743851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 29738222 - 29738143
Alignment:
Q  158 tgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggtt 237  Q
    ||||||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  29738222 tgaccggtttataataagatatggtcctggttatgaatctaaattcacataagtggtttataaatggatatggtttggtt 29738143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 9685001 - 9684906
Alignment:
Q  160 accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca 255  Q
    ||||||| | |||||||||||||  ||||||||||||||||  || ||||  | |||||| ||| ||||||||| || ||||||||||||||||||    
T  9685001 accggtttacaataaaatatggtaatggttatgaatccaaaaccatataagagatttatatatgtatatggttttgtaggtcaaaatatccgacca 9684906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 7544725 - 7544803
Alignment:
Q  178 atggtcgtggttatgaatccaaattcacataaatggtttataaat-gaatatggtttggttggtcaaaatatccgacca 255  Q
    |||||| ||||||||||||||||| || |||| || ||||||||| | |||| ||||||| ||||| ||||| ||||||    
T  7544725 atggtcatggttatgaatccaaatccatataagtgatttataaatgggatattgtttggtcggtcagaatattcgacca 7544803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 31188072 - 31188167
Alignment:
Q  160 accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca 255  Q
    ||||||| | |||||||||||||| |||||| |||||||||  || |||| ||||||||| ||| |||||||||||| ||||||||||||| ||||    
T  31188072 accggtttacaataaaatatggtcttggttaggaatccaaaaccatataagtggtttatatatggatatggtttggtcggtcaaaatatccaacca 31188167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 31199916 - 31200011
Alignment:
Q  160 accggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca 255  Q
    ||||||| | |||||||||||||| |||||| |||||||||  || |||| ||||||||| ||| |||||||||||| ||||||||||||| ||||    
T  31199916 accggtttacaataaaatatggtcctggttaggaatccaaaaccatataagtggtttatatatggatatggtttggtcggtcaaaatatccaacca 31200011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 7958896 - 7958809
Alignment:
Q  162 cggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttggtcaaaatatc 249  Q
    ||||| |||||||||||||||  |||||||||||||||||  | |||| || |||||| ||| |||||||||||| ||||||||||||    
T  7958896 cggtttataataaaatatggttatggttatgaatccaaatctatataagtgatttatatatggatatggtttggtcggtcaaaatatc 7958809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 458
Target Start/End: Original strand, 19367750 - 19367907
Alignment:
Q  300 gatgtcatacctacaatttcgaacaacggaaagttgtatttattaattttgtacaatgttatccataaccaacacaattgaaaacatgttcaatggctga 399  Q
    |||||||||||||||||||||| |||||  ||  | ||||||||| |||||||   |||||||||||| ||||||||||| ||||| ||||||   ||      
T  19367750 gatgtcatacctacaatttcgagcaacgacaatctatatttattagttttgtatg-tgttatccataatcaacacaattggaaacaagttcaacaacttg 19367848  T
Q  400 aatgaatctggatgcgcccaacaaatatctctcaatacatctaagtcgtctctgcttct 458  Q
    |  |||||||||||| ||||    |||||||||| |||||||||||| ||||| |||||    
T  19367849 acggaatctggatgctcccacattatatctctcattacatctaagtcatctcttcttct 19367907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 16831737 - 16831852
Alignment:
Q  140 tatttatatctagtttcgtgaccggttcataataaaatatggtcgtggttatgaatccaaattcacataaatggtttataaatgaatatggtttggttgg 239  Q
    |||||||||| | ||| |||||| ||| ||||||||| ||| |  ||||||  ||| |||||  | ||||||  |||||||||| ||||  |||| ||||    
T  16831737 tatttatatccaatttggtgaccagtttataataaaacatgattatggttagaaattcaaatctatataaataatttataaatgtatataatttgattgg 16831836  T
Q  240 tcaaaatatccgacca 255  Q
    ||||||||||||||||    
T  16831837 tcaaaatatccgacca 16831852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 26428904 - 26428955
Alignment:
Q  204 acataaatggtttataaatgaatatggtttggttggtcaaaatatccgacca 255  Q
    ||||||||||||||||||| ||||| ||||  ||||||||||||||||||||    
T  26428904 acataaatggtttataaataaatatagtttaattggtcaaaatatccgacca 26428955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University