View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_high_7 (Length: 442)
Name: NF11134_high_7
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_high_7 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 75405 - 75838
Alignment:
| Q |
1 |
aatgctaatttgtttcattattttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75405 |
aatgctaatttgtttcattattttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcag |
75504 |
T |
|
| Q |
101 |
gtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75505 |
gtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctt |
75604 |
T |
|
| Q |
201 |
tgccagatctatagttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgca-n |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75605 |
tgccagatctatagttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcatt |
75704 |
T |
|
| Q |
300 |
nnnnnnnaaatgtttggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttattt |
399 |
Q |
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| T |
75705 |
tttttttaaatgtttggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttattt |
75804 |
T |
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| Q |
400 |
cttttgtattttgttactattctcacaggttctg |
433 |
Q |
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| T |
75805 |
cttttgtattttgttactattctcacatgttctg |
75838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
336 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
423 |
Q |
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| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 29704803 - 29704744
Alignment:
| Q |
6 |
taatttgtttcattattttatgatagtttttaccatgtgttcacaattataggctggact |
65 |
Q |
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| T |
29704803 |
taatttgtttcactattttatgatagatctttctatgtgttcacaattataggttggact |
29704744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
349 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
432 |
Q |
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| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
336 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
423 |
Q |
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| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
336 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
417 |
Q |
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| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
367 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
432 |
Q |
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| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
336 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
417 |
Q |
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||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
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| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 235972 - 235903
Alignment:
| Q |
77 |
atgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaa |
146 |
Q |
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| T |
235972 |
atgtaacttggcttctcaatgcaggtagaagagagcattggtcactcttttggaaaaccaatccaaacaa |
235903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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