View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11134_high_8 (Length: 424)

Name: NF11134_high_8
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11134_high_8
NF11134_high_8
[»] chr8 (22 HSPs)
chr8 (62-330)||(36936596-36936858)
chr8 (165-330)||(36936317-36936482)
chr8 (181-330)||(30272855-30273004)
chr8 (1-62)||(36936896-36936957)
chr8 (215-282)||(41092750-41092817)
chr8 (181-251)||(42346538-42346608)
chr8 (182-251)||(28090658-28090727)
chr8 (180-251)||(42345165-42345236)
chr8 (180-244)||(44835414-44835478)
chr8 (195-251)||(28091355-28091411)
chr8 (188-251)||(44834715-44834778)
chr8 (187-229)||(4364045-4364087)
chr8 (371-408)||(30272777-30272814)
chr8 (371-408)||(36936239-36936276)
chr8 (371-408)||(36936518-36936555)
chr8 (180-229)||(27918047-27918096)
chr8 (181-229)||(7423486-7423534)
chr8 (189-229)||(26778523-26778563)
chr8 (185-248)||(30272102-30272166)
chr8 (181-229)||(25876521-25876569)
chr8 (178-230)||(26777708-26777760)
chr8 (181-229)||(34992264-34992312)
[»] chr4 (25 HSPs)
chr4 (181-330)||(3619727-3619875)
chr4 (215-275)||(53290190-53290250)
chr4 (181-251)||(30478309-30478379)
chr4 (181-251)||(48013317-48013387)
chr4 (181-323)||(52757813-52757955)
chr4 (180-251)||(46707393-46707464)
chr4 (181-251)||(48013871-48013941)
chr4 (183-251)||(30478862-30478930)
chr4 (182-282)||(31634766-31634866)
chr4 (188-284)||(46765113-46765209)
chr4 (188-284)||(12589294-12589390)
chr4 (183-221)||(36513999-36514037)
chr4 (371-408)||(3619649-3619686)
chr4 (371-408)||(53290048-53290085)
chr4 (181-229)||(53289473-53289521)
chr4 (184-251)||(7907580-7907647)
chr4 (188-251)||(46707990-46708053)
chr4 (180-229)||(42545563-42545612)
chr4 (208-284)||(11681219-11681295)
chr4 (208-284)||(11689498-11689574)
chr4 (188-284)||(25654731-25654827)
chr4 (188-230)||(3847893-3847935)
chr4 (182-227)||(53600180-53600225)
chr4 (181-229)||(37275088-37275136)
chr4 (181-229)||(42544488-42544536)
[»] chr5 (16 HSPs)
chr5 (180-328)||(16970934-16971082)
chr5 (181-251)||(26688166-26688236)
chr5 (181-251)||(26957897-26957967)
chr5 (180-248)||(14553666-14553734)
chr5 (188-251)||(7625480-7625543)
chr5 (188-251)||(26688719-26688782)
chr5 (188-251)||(26958450-26958513)
chr5 (180-229)||(31148445-31148494)
chr5 (178-251)||(7626001-7626074)
chr5 (62-151)||(20759335-20759423)
chr5 (210-281)||(6353713-6353784)
chr5 (62-151)||(20737308-20737396)
chr5 (183-248)||(14553952-14554017)
chr5 (1-61)||(20737464-20737524)
chr5 (188-229)||(4607471-4607512)
chr5 (1-61)||(20759207-20759267)
[»] chr7 (11 HSPs)
chr7 (188-282)||(29315258-29315352)
chr7 (181-251)||(41195344-41195414)
chr7 (182-273)||(41224110-41224201)
chr7 (187-228)||(24322428-24322469)
chr7 (181-229)||(20896038-20896086)
chr7 (181-228)||(44909360-44909407)
chr7 (378-408)||(41224318-41224348)
chr7 (181-229)||(10257572-10257620)
chr7 (211-275)||(30915764-30915828)
chr7 (175-227)||(42646136-42646188)
chr7 (181-248)||(44896046-44896114)
[»] chr6 (8 HSPs)
chr6 (181-251)||(7159319-7159389)
chr6 (181-251)||(14337535-14337605)
chr6 (181-251)||(7158435-7158505)
chr6 (188-284)||(10607408-10607504)
chr6 (180-222)||(22857256-22857298)
chr6 (180-229)||(279544-279593)
chr6 (181-229)||(3543063-3543111)
chr6 (211-275)||(29290153-29290217)
[»] chr2 (14 HSPs)
chr2 (188-251)||(19521348-19521411)
chr2 (180-251)||(37157521-37157592)
chr2 (181-251)||(4478851-4478921)
chr2 (188-282)||(16427234-16427328)
chr2 (181-251)||(19521895-19521965)
chr2 (182-251)||(16649705-16649774)
chr2 (181-229)||(37720038-37720086)
chr2 (181-251)||(16650464-16650531)
chr2 (181-229)||(24727821-24727869)
chr2 (176-251)||(37543253-37543328)
chr2 (181-275)||(14573261-14573355)
chr2 (181-229)||(2650229-2650277)
chr2 (181-223)||(24741811-24741853)
chr2 (181-229)||(37547998-37548046)
[»] chr1 (9 HSPs)
chr1 (181-251)||(194679-194749)
chr1 (181-282)||(45064686-45064787)
chr1 (180-323)||(49610705-49610848)
chr1 (188-251)||(45811272-45811335)
chr1 (176-230)||(8560834-8560888)
chr1 (181-229)||(1012547-1012595)
chr1 (180-275)||(43737728-43737823)
chr1 (180-226)||(3621920-3621966)
chr1 (181-229)||(43737978-43738026)
[»] chr3 (21 HSPs)
chr3 (181-251)||(25329383-25329453)
chr3 (181-251)||(30847831-30847901)
chr3 (181-248)||(43638059-43638126)
chr3 (188-323)||(46721864-46721999)
chr3 (188-248)||(25329939-25329999)
chr3 (188-251)||(42179970-42180033)
chr3 (182-248)||(42179099-42179165)
chr3 (208-289)||(46740505-46740586)
chr3 (192-251)||(30847206-30847265)
chr3 (180-323)||(38742080-38742223)
chr3 (181-217)||(5353507-5353543)
chr3 (183-229)||(32994927-32994973)
chr3 (181-229)||(37105077-37105125)
chr3 (181-229)||(49757182-49757230)
chr3 (211-269)||(52398988-52399046)
chr3 (181-229)||(14667297-14667344)
chr3 (181-229)||(19132812-19132860)
chr3 (180-228)||(31556217-31556265)
chr3 (211-275)||(44406913-44406977)
chr3 (181-229)||(49749125-49749173)
chr3 (211-275)||(50305422-50305486)
[»] scaffold0180 (1 HSPs)
scaffold0180 (210-320)||(22171-22281)
[»] scaffold0041 (1 HSPs)
scaffold0041 (181-275)||(27221-27315)
[»] scaffold2003 (1 HSPs)
scaffold2003 (210-275)||(620-685)
[»] scaffold0129 (1 HSPs)
scaffold0129 (211-244)||(43203-43236)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 62 - 330
Target Start/End: Complemental strand, 36936858 - 36936596
Alignment:
Q  62 tcaacaaactcgagtgttttcaaattcccaaatcccatatattatttccctactcaaattgtttcttgaaaaattcaaagacaccaatccaaatgcgaat 161  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  36936858 tcaagaaactcgagtgttttcaaattcccaaatcccatatattatttccctactcaaattgtttcttgaaaaattcaaagacaccaatcc------gaat 36936765  T
Q  162 aggaaccctatgactttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatac 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  36936764 aggaaccctatgactttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatac 36936665  T
Q  262 acttttatcatactacctcaatattagannnnnnnccctctctcttcaaccacacaatcatcaaccatt 330  Q
    |||||||||||||| |||||||| ||||       ||||||||||||||||||||||||||||||||||    
T  36936664 acttttatcatactccctcaatactagatttttctccctctctcttcaaccacacaatcatcaaccatt 36936596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 165 - 330
Target Start/End: Complemental strand, 36936482 - 36936317
Alignment:
Q  165 aaccctatgactttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacact 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  36936482 aaccctatgactttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacact 36936383  T
Q  265 tttatcatactacctcaatattagannnnnnnccctctctcttcaaccacacaatcatcaaccatt 330  Q
    ||||||||||| ||| |||| ||||       ||||||||||||||||||||||||||||||||||    
T  36936382 tttatcatactcccttaatactagatttttctccctctctcttcaaccacacaatcatcaaccatt 36936317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 30273004 - 30272855
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30273004 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccctc 30272905  T
Q  281 aatattagannnnnnnccctctctcttcaaccacacaatcatcaaccatt 330  Q
    |||| ||||       |||||||||||||| |||| ||||||||||||||    
T  30272904 aatactagatttttctccctctctcttcaaacacaaaatcatcaaccatt 30272855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36936957 - 36936896
Alignment:
Q  1 agctttgtaactttgctccgattgagattttaccaatgagattattgtttgacaaatccatt 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36936957 agctttgtaactttgctccgattgagattttaccaatgagattattgtttgacaaatccatt 36936896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 41092817 - 41092750
Alignment:
Q  215 ccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaa 282  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| ||||||    
T  41092817 ccatcatgggaaagtaagttttaaccattagatctaatgaagaatacacttttatcatactccctcaa 41092750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 42346608 - 42346538
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||    
T  42346608 ggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaagtaaatctcaaccattagattcaa 42346538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 28090658 - 28090727
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  28090658 gtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 28090727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 42345165 - 42345236
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  42345165 tggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagtaaatctcaatcattagattcaa 42345236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 44835478 - 44835414
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccatta 244  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  44835478 tggtgccatttaatttggaaaagcaaacttctttcccatcatgggaaagtaaatctcaaccatta 44835414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 28091411 - 28091355
Alignment:
Q  195 tgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||    
T  28091411 tgggaaagcaaacttctttcccatcataggaaagtaaatctcaaccattagattcaa 28091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 44834715 - 44834778
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||| |||||||  |||| ||||||||||||||| ||| |||||||||||||||    
T  44834715 tttaatttgggaaaacaaacttccttcctatcatgggaaagtaaatctcaaccattagattcaa 44834778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 4364045 - 4364087
Alignment:
Q  187 gtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  4364045 gtttaatttgggaaaggaaacttttttcccatcatgggaaagt 4364087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 30272814 - 30272777
Alignment:
Q  371 gtacaagaccatcataaccaccaccaccaccatgttta 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30272814 gtacaagaccatcataaccaccaccaccaccatgttta 30272777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 36936276 - 36936239
Alignment:
Q  371 gtacaagaccatcataaccaccaccaccaccatgttta 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36936276 gtacaagaccatcataaccaccaccaccaccatgttta 36936239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 36936555 - 36936518
Alignment:
Q  371 gtacaagaccatcataaccaccaccaccaccatgttta 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36936555 gtacaagaccatcataaccaccaccaccaccatgttta 36936518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||||||||||||||||||  | |||||||||||| |||||||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 7423486 - 7423534
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| |||||||||||||| || |||||||||| |||||||||||||    
T  7423486 ggtgccatttaatttgggaaaacacacttttttcctatcatgggaaagt 7423534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 26778563 - 26778523
Alignment:
Q  189 ttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  26778563 ttaatttgggaaagcaaacttctttcccatcatgagaaagt 26778523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 30272102 - 30272166
Alignment:
Q  185 ccgtttaatttgggaaagcaaacttttttcccatcatgggaaag-taagtcttaaccattagatt 248  Q
    |||||||||||||||||||||||||||| || | ||| |||||| ||| | ||||||||||||||    
T  30272102 ccgtttaatttgggaaagcaaactttttccctaccataggaaagttaatttttaaccattagatt 30272166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 25876521 - 25876569
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | | |||||||||| |||||||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagt 25876569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 26777708 - 26777760
Alignment:
Q  178 tgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagta 230  Q
    ||||||||| |||||||||| ||||||||||| |||  ||||||||| |||||    
T  26777708 tgtggtgccatttaatttggaaaagcaaacttctttttcatcatggggaagta 26777760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | | |||||||||| |||||||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 3619875 - 3619727
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctc 280  Q
    ||||||||||||||||||||| |||||||||||  ||| |||  ||||||||| || | | ||||||||||||||||||||||||||||||||||  |||    
T  3619875 ggtgccgtttaatttgggaaaacaaacttttttttcattatgaaaaagtaagtttttaac-ttagattcaatgaagaatacacttttatcatactttctc 3619777  T
Q  281 aatattagannnnnnnccctctctcttcaaccacacaatcatcaaccatt 330  Q
    |||| ||||       ||||||||||||||||||| ||||||||||||||    
T  3619776 aatactagatttttctccctctctcttcaaccacaaaatcatcaaccatt 3619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 53290250 - 53290190
Alignment:
Q  215 ccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53290250 ccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatact 53290190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 30478309 - 30478379
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  30478309 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaatcattagattcaa 30478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 48013317 - 48013387
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||    
T  48013317 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcatccattagattcaa 48013387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 52757813 - 52757955
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctc 280  Q
    |||||| ||||||||||||||| | |||||||||||  ||| ||||||||||| |||| | ||||||| |||  |||| | ||| ||||||| || ||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttccctccataggaaagtaagttttaatctttagattaaatagagaacatactcttatcatgctccctc 52757912  T
Q  281 aatattagannnnnnnccctctctcttcaaccacacaatcatc 323  Q
    |||||||||       |||| ||||||||||||||||||||||    
T  52757913 aatattagatttttctccctttctcttcaaccacacaatcatc 52757955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 46707393 - 46707464
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  46707393 tggtgccatttaatttgagaaagtaaacttttttcctatcatgggaaagtaaatctcaaccattagattcaa 46707464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 48013941 - 48013871
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| ||||||||| |||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  48013941 ggtgccatttaatttgagaaagcaaacttctttcccatcatggaaaagtaaatctcaaccattagattcaa 48013871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 30478930 - 30478862
Alignment:
Q  183 tgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| || ||||||||||||    
T  30478930 tgccatttaatttgggaaagcaaacttcttttccatcatgggaaagtaaatctcaatcattagattcaa 30478862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 31634866 - 31634766
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctca 281  Q
    ||||| ||||||||| |||||   | |||||| ||||||||| ||||||||| |||||||||||||  ||||||||||| ||| |||||||||| |||||    
T  31634866 gtgccatttaatttgagaaagactagtttttttccatcatggaaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctca 31634767  T
Q  282 a 282  Q
    |    
T  31634766 a 31634766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 46765209 - 46765113
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||||||||   | |||||||||| |||||||||| |||| | |||||||||||| ||||||||||||| |  ||||||||| ||||||||    
T  46765209 tttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaagaatacagtcatatcatactccctcaata 46765113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 12589294 - 12589390
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||||||||   | ||||||||||  ||||||||| |||| | |||||||||||| ||||||||||||| |  ||||||||| ||||||||    
T  12589294 tttaatttgggaaagattagttttttcccactatgggaaagcaagtttcaaccattagattaaatgaagaatacattcatatcatactccctcaata 12589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 36513999 - 36514037
Alignment:
Q  183 tgccgtttaatttgggaaagcaaacttttttcccatcat 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36513999 tgccgtttaatttgggaaagcaaacttttttcccatcat 36514037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 3619686 - 3619649
Alignment:
Q  371 gtacaagaccatcataaccaccaccaccaccatgttta 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3619686 gtacaagaccatcataaccaccaccaccaccatgttta 3619649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 53290085 - 53290048
Alignment:
Q  371 gtacaagaccatcataaccaccaccaccaccatgttta 408  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53290085 gtacaagaccatcataaccaccaccaccaccatgttta 53290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 53289473 - 53289521
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  53289473 ggtgtcgtttaatttgggaaagcaaactttttccccaacatgggaaagt 53289521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 7907647 - 7907580
Alignment:
Q  184 gccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||||||||||||||| |||  |||||| | ||||||| ||| |||| ||||||||||    
T  7907647 gccgtttaatttgggaaagcaaacttctttttcatcattgaaaagtaaatctcaaccgttagattcaa 7907580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 46708053 - 46707990
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||| | ||||||||||| |||| |||||||||||||||| ||| || ||||||||||||    
T  46708053 tttaatttagaaaagcaaacttctttctcatcatgggaaagtaaatctcaatcattagattcaa 46707990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 42545612 - 42545563
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||| ||||||||||||||| | |||||||||||||||| |||||||    
T  42545612 tggtgccatttaatttgggaaagtacacttttttcccatcataggaaagt 42545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 11681295 - 11681219
Alignment:
Q  208 ttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||| |||||||||| || | | |||||||||||| |||||||| |||| |  ||||||||| ||||||||    
T  11681295 ttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctcaata 11681219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 11689574 - 11689498
Alignment:
Q  208 ttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||| |||||||||| || | | |||||||||||| |||||||| |||| |  ||||||||| ||||||||    
T  11689574 ttttttcccaccatgggaaagcaaatttcaaccattagattaaatgaagagtacagtcatatcatactccctcaata 11689498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 25654731 - 25654827
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||||||||   | |||||||||| ||||| |||  |||| | |||||||| ||| ||||||||||||| |  ||||||||| ||||||||    
T  25654731 tttaatttgggaaagactagttttttcccaccatggaaaaacaagtttcaaccattaaattaaatgaagaatacagtcatatcatactccctcaata 25654827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 3847893 - 3847935
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagta 230  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  3847893 tttaatttgggaaaggagacttttttcccaccatgggaaagta 3847935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 53600180 - 53600225
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaa 227  Q
    ||||| ||||| |||||||||||||||| |||||||||||| ||||    
T  53600180 gtgccatttaacttgggaaagcaaacttctttcccatcatgagaaa 53600225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||| | |||| ||||||| |||| ||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 42544488 - 42544536
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagt 42544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 16971082 - 16970934
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacct 279  Q
    ||||||| |||||||||||||||   | |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||| |||    
T  16971082 tggtgccatttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccct 16970983  T
Q  280 caatattagannnnnnnccctctctcttcaaccacacaatcatcaacca 328  Q
    ||| | |  |       ||||| |||||||||||||||| |||||||||    
T  16970982 caacactcaatttttctccctccctcttcaaccacacaaacatcaacca 16970934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 26688166 - 26688236
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26688166 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 26688236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 26957897 - 26957967
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26957897 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 26957967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 14553666 - 14553734
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagatt 248  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  14553666 tggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaagtaaatctcaaccattagatt 14553734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 7625480 - 7625543
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  7625480 tttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattaaattcaa 7625543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 26688782 - 26688719
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26688782 tttaatttggaaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 26688719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 26958513 - 26958450
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26958513 tttaatttggaaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 26958450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 31148494 - 31148445
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31148494 tggtgccgtttaatttgggaaagcacacttttttcccatcatgggaaagt 31148445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 7626074 - 7626001
Alignment:
Q  178 tgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||||||||||||| ||| || ||||| ||||||    
T  7626074 tgtggtgtcatttaatttggaaaagcaaacttctttcccatcatgggaaagtaaatctcaatcattatattcaa 7626001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 20759335 - 20759423
Alignment:
Q  62 tcaacaaactcgagtgttttcaaattcccaaatcccatatattatttccctactcaaattgtttcttgaaaaattcaaagacaccaatcc 151  Q
    |||| |||||| |||| |||||||||||||| |  |||| |||||||| | |||||||||||| ||||| ||||||||||||||||||||    
T  20759335 tcaagaaactctagtgatttcaaattcccaa-tgtcatacattatttctccactcaaattgttccttgataaattcaaagacaccaatcc 20759423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 6353713 - 6353784
Alignment:
Q  210 ttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctca 281  Q
    |||||||||||| ||||||||| | |||||||||||||  |||||| || |||||||||||||||| |||||    
T  6353713 ttttcccatcataggaaagtaaattttaaccattagatgaaatgaaaaacacacttttatcatactccctca 6353784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 20737396 - 20737308
Alignment:
Q  62 tcaacaaactcgagtgttttcaaattcccaaatcccatatattatttccctactcaaattgtttcttgaaaaattcaaagacaccaatcc 151  Q
    |||| |||||| |||| |||||||||||||| |  |||| |||||||| | |||||||||||| ||||| ||| ||||||||||||||||    
T  20737396 tcaagaaactctagtgatttcaaattcccaa-tgtcatacattatttctccactcaaattgttccttgataaactcaaagacaccaatcc 20737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 14554017 - 14553952
Alignment:
Q  183 tgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagatt 248  Q
    |||| ||||||||||||||| |||||| ||| | || |||||||||||| ||| ||||||||||||    
T  14554017 tgccatttaatttgggaaagtaaacttatttactattatgggaaagtaaatctcaaccattagatt 14553952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20737524 - 20737464
Alignment:
Q  1 agctttgtaactttgctccgattgagattttaccaatgagattattgtttgacaaatccat 61  Q
    |||||||||||| || ||| ||||  |||| ||||||||||||||||| ||||||||||||    
T  20737524 agctttgtaactgtgttccaattggtatttcaccaatgagattattgtgtgacaaatccat 20737464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 4607471 - 4607512
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||||||||||| | |||||||||||| |||||||||||    
T  4607471 tttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20759207 - 20759267
Alignment:
Q  1 agctttgtaactttgctccgattgagattttaccaatgagattattgtttgacaaatccat 61  Q
    |||||||||||| || ||| ||||  |||| ||| ||||||||||||| ||||||||||||    
T  20759207 agctttgtaactgtgttccaattggtatttcaccgatgagattattgtatgacaaatccat 20759267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 29315352 - 29315258
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaa 282  Q
    |||||||||||||||   | |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||| ||||||    
T  29315352 tttaatttgggaaagactagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccctcaa 29315258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 41195414 - 41195344
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  41195414 ggtgccatttaatttgggaaagcaaacttctttcccatcatggaaaagtaaatctcaaccattagattcaa 41195344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 41224110 - 41224201
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcata 273  Q
    ||||| || ||||||||||||   | |||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||||||    
T  41224110 gtgccattaaatttgggaaagactagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcata 41224201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 24322428 - 24322469
Alignment:
Q  187 gtttaatttgggaaagcaaacttttttcccatcatgggaaag 228  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  24322428 gtttaatttgggaaaggaaacttttttcccatcatgggaaag 24322469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 20896086 - 20896038
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  20896086 ggtggcgtttaatttgggaaaggaaacttttttcccatcatgagaaagt 20896038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 44909407 - 44909360
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaag 228  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||    
T  44909407 ggtgccgtttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 41224318 - 41224348
Alignment:
Q  378 accatcataaccaccaccaccaccatgttta 408  Q
    |||||||||||||||||||||||||||||||    
T  41224318 accatcataaccaccaccaccaccatgttta 41224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 10257620 - 10257572
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||| ||||||  |||||||||| |||| |||||||||||||||||||    
T  10257620 ggtgcagtttaacctgggaaagcacacttctttcccatcatgggaaagt 10257572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 30915764 - 30915828
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||| ||||||||||||| | ||| |||||||||  ||||||||  | ||||||||||||||    
T  30915764 tttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatact 30915828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 42646188 - 42646136
Alignment:
Q  175 ctttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaa 227  Q
    ||||| |||| | |||||||||| |||||| |||||||| |||||||||||||    
T  42646188 ctttggggtgtcatttaatttggaaaagcacactttttttccatcatgggaaa 42646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 44896046 - 44896114
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaag-tcttaaccattagatt 248  Q
    ||||||||||||||||||||||   | ||||| |||| ||||||||||| || | ||||||||||||||    
T  44896046 ggtgccgtttaatttgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagatt 44896114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 7159389 - 7159319
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagtaaatctcaaccattagattcaa 7159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 14337605 - 14337535
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  14337605 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 14337535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 7158435 - 7158505
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||    
T  7158435 ggtgccatttaatttgggaaagcaaacttcattcccatcatgggaaagtaaatctcaaccattagattcaa 7158505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 10607408 - 10607504
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaata 284  Q
    |||||||||||||||   | |||||||||| |||||||||| |||| | |||||||||||| |||||| |||| | |  ||||||||| ||||||||    
T  10607408 tttaatttgggaaagactagttttttcccaccatgggaaagcaagtttcaaccattagattaaatgaaaaatatagtcatatcatactccctcaata 10607504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 22857298 - 22857256
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatg 222  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||    
T  22857298 tggtgccgtttaatttgggaaagcatacttctttcccaccatg 22857256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 279544 - 279593
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||| |||||||||||||| || |||||||| |||||| ||||||||    
T  279544 tggtgccatttaatttgggaaaacatactttttttccatcacgggaaagt 279593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | | |||||||||| |||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 29290153 - 29290217
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||| ||||||||||| | | ||||||||  |||| ||| ||||||||||| ||||||||||    
T  29290153 tttcccaccatgggaaagttaatgttaaccatgggattaaataaagaatacactcttatcatact 29290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 19521348 - 19521411
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  19521348 tttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatcttaaccattagattcaa 19521411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 37157521 - 37157592
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||    
T  37157521 tggtgccatttaatttgggaaagcaaacttctttcccatcataggaaagtaaatctcaaccattagattcaa 37157592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 4478851 - 4478921
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  4478851 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattatattcaa 4478921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 16427328 - 16427234
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaa 282  Q
    |||||||||||||||   | |||||| ||||||||||||||||||| |||||||||||||  ||||||||||| ||| |||||||||| ||||||    
T  16427328 tttaatttgggaaagattagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctcaa 16427234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 19521965 - 19521895
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  19521965 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaatcattagattcaa 19521895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 16649705 - 16649774
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  16649705 gtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 16649774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 37720038 - 37720086
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37720038 ggtgccgtttaatttgggaaagcaaactttttttccatcatgggaaagt 37720086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 16650531 - 16650464
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| |||||   ||| ||||||||| ||| |||||||||||||||    
T  16650531 ggtgccatttaatttgggaaagcaaacttctttcc---cataggaaagtaaatctcaaccattagattcaa 16650464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 24727821 - 24727869
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  24727821 ggtgccatttaatttgggaaagcacacttttttcccatcatggaaaagt 24727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 37543253 - 37543328
Alignment:
Q  176 tttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||| |||||| |||||| |||||||| |||||| ||||| ||||||  ||||||| ||| |||||||||||||||    
T  37543253 tttgaggtgccatttaatatgggaaagtaaacttctttcctatcatgaaaaagtaaatctcaaccattagattcaa 37543328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 14573261 - 14573355
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    |||||| ||||||||||||||| | | |||||||||| |||||||||||   || |  |||||||||| ||||| ||||| | ||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatact 14573355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 2650229 - 2650277
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||  | |||||||||||||||||| |||||    
T  2650229 ggtgccgtttaatttgggaaatgagacttttttcccatcatggaaaagt 2650277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 24741853 - 24741811
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgg 223  Q
    |||||||||||||||||||||| | |||||||||||| |||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatgg 24741811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 37547998 - 37548046
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | | || |||||||||||||||||||    
T  37547998 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagt 37548046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 194749 - 194679
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  194749 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagtaaatctcaaccattagattcaa 194679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 45064686 - 45064787
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctc 280  Q
    |||||| |||||||||||||||   | |||||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||| |||||||||| ||||    
T  45064686 ggtgccatttaatttgggaaagattagttttttcccatcatgggaaagtaagttttaaccattagatctaattaagaatatactcttatcatactccctc 45064785  T
Q  281 aa 282  Q
    ||    
T  45064786 aa 45064787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 49610705 - 49610848
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacct 279  Q
    ||||||| ||| ||||||||||| | |||||||||||  ||||||||||||||| |||||| ||||||| |||| | || | ||| ||||||| || |||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagtaagttttaacctttagattaaatggataacatactcttatcatgctccct 49610804  T
Q  280 caatattagannnnnnnccctctctcttcaaccacacaatcatc 323  Q
    ||||| ||||       |||| |||||||||||| |||||||||    
T  49610805 caatactagatttttctccctttctcttcaaccagacaatcatc 49610848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 45811335 - 45811272
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| ||| |||||||| ||||||    
T  45811335 tttaatttgggaaaacaaacttctttctcatcatgggaaagtaaatctcaaccattaaattcaa 45811272  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 8560834 - 8560888
Alignment:
Q  176 tttgtggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagta 230  Q
    ||||||||| | ||||||||||||||| | |||| ||||||||||||||||||||    
T  8560834 tttgtggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagta 8560888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 1012547 - 1012595
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||| | | |||||||||| |||||||||||    
T  1012547 ggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagt 1012595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 43737728 - 43737823
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||| ||||||||||||||| | | || ||||||| |||||||||||   || |  |||||||||| ||||| ||||| | ||||||||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatact 43737823  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 3621920 - 3621966
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaa 226  Q
    |||||||||||||||||| |||| | |||||||||| ||||||||||    
T  3621920 tggtgccgtttaatttggaaaaggagacttttttcctatcatgggaa 3621966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 43738026 - 43737978
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| | | || |||||||||||||||||||    
T  43738026 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagt 43737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 25329383 - 25329453
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  25329383 ggtgccatttaatttaggaaagcaaacttatttcccatcatgggaaagtaaatctcaaccattagattcaa 25329453  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 30847901 - 30847831
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||    
T  30847901 ggtgccatttaatttgggaaagcaaacttccttcccatcatgggaaagtaaatctcaaccattagattcaa 30847831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 43638126 - 43638059
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagatt 248  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  43638126 ggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagtaaatctcaaccattagatt 43638059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 46721999 - 46721864
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaatatta 287  Q
    ||||||||||||||| | |||||||| ||   |||||||||||||| |||||| ||| ||| |||| |||| | ||||||||||| || |||||||| ||    
T  46721999 tttaatttgggaaagaagactttttttcctctatgggaaagtaagttttaacctttaaattaaatggagaacatacttttatcatgctccctcaatacta 46721900  T
Q  288 gannnnnnnccctctctcttcaaccacacaatcatc 323  Q
    ||       |||| ||||||||||||||||||||||    
T  46721899 gatttttctccctttctcttcaaccacacaatcatc 46721864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 25329999 - 25329939
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagatt 248  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  25329999 tttaatttgggaaagcaaacttcttttccatcatgggaaagtaaatctcaaccattagatt 25329939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 42180033 - 42179970
Alignment:
Q  188 tttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||| ||||||    
T  42180033 tttaatttgggaaagcaaacttctttctcatcatgggaaagtaaatctcaaccattaaattcaa 42179970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 42179099 - 42179165
Alignment:
Q  182 gtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagatt 248  Q
    ||||| |||||||||||||||||||||| ||| ||||||||| ||||||| ||| ||||||||||||    
T  42179099 gtgccatttaatttgggaaagcaaacttcttttccatcatggaaaagtaaatctcaaccattagatt 42179165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 46740586 - 46740505
Alignment:
Q  208 ttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaatattaga 289  Q
    |||||||||| ||||||||||||||| |||| |||| |||| |||||| || ||||| |||||||||| |||||| ||||||    
T  46740586 ttttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattaga 46740505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 30847206 - 30847265
Alignment:
Q  192 atttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaa 251  Q
    |||||||||||||||||| ||| ||||||||| ||||||| ||| |||||||||||||||    
T  30847206 atttgggaaagcaaacttcttttccatcatggaaaagtaaatctcaaccattagattcaa 30847265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 38742223 - 38742080
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacct 279  Q
    ||||||| |||||| |||||||| | |||||||||||   |||| ||||||||| |||||| ||||||  |||| |||| | ||| ||||||| || |||    
T  38742223 tggtgccatttaatctgggaaagaagacttttttccctcaatggaaaagtaagttttaacctttagatcaaatggagaacatactcttatcatgctccct 38742124  T
Q  280 caatattagannnnnnnccctctctcttcaaccacacaatcatc 323  Q
    ||||| ||||       |||| | ||||||||||||||||||||    
T  38742123 caatactagatttttctccctttttcttcaaccacacaatcatc 38742080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 5353507 - 5353543
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttccca 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  5353507 ggtgccgtttaatttgggaaagcaaacttttttccca 5353543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 32994927 - 32994973
Alignment:
Q  183 tgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||    
T  32994927 tgccatttaatttgggaaagcacatttttttcccatcatgggaaagt 32994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 37105125 - 37105077
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||  | |||||||||||| |||||||||||    
T  37105125 ggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagt 37105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 49757230 - 49757182
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||| | |||||||||| | |||||||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagt 49757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 52399046 - 52398988
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttat 269  Q
    ||||||||||||||||||||| | || ||||||||||| |||  |||||||| ||||||    
T  52399046 tttcccatcatgggaaagtaaattttgaccattagattaaatagagaatacatttttat 52398988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 14667297 - 14667344
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||||||||||||||||||| | | |||||||||| |||||||||||    
T  14667297 ggtgccgtttaatttgggaaaggaga-ttttttcccaccatgggaaagt 14667344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 19132860 - 19132812
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||||||||||||| ||| || ||||||| |||||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagt 19132812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 31556265 - 31556217
Alignment:
Q  180 tggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaag 228  Q
    ||||||| ||||||||||||||| | | || ||||||||||||||||||    
T  31556265 tggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 44406977 - 44406913
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||| ||||||||||||| | ||| |||||||||  ||||||||  | ||||||||||||||    
T  44406977 tttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatact 44406913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 49749125 - 49749173
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 229  Q
    |||||| ||||| ||||||||| ||| |||||||||||||| |||||||    
T  49749125 ggtgccatttaacttgggaaaggaaatttttttcccatcataggaaagt 49749173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 50305486 - 50305422
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    ||||||| ||||| ||||||| | |||||||||||||| ||||||||  | ||| ||||||||||    
T  50305486 tttcccaccatggaaaagtaaattttaaccattagattgaatgaagagcatactcttatcatact 50305422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 22171 - 22281
Alignment:
Q  210 ttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatactacctcaatattagannnnnnnccctctctcttca 309  Q
    |||||||| ||||||||||||||| |||| |||| |||| |||||| || ||||| |||||||||| |||||| ||||||       |||| ||||||||    
T  22171 ttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattagatttttctccctttctcttca 22270  T
Q  310 accacacaatc 320  Q
    ||| |||||||    
T  22271 acctcacaatc 22281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 27221 - 27315
Alignment:
Q  181 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    |||||| ||||||||||||||| | | || |||||||||||||||||||   || |  |||||||||| ||||| ||| ||| | ||||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatact 27315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 620 - 685
Alignment:
Q  210 ttttcccatcatgggaaagtaagtcttaaccattagattcaatgaagaatacacttttatcatact 275  Q
    |||||||||  ||||||||| | | ||| |||||||||| ||| ||||||||||| ||||||||||    
T  620 ttttcccattgtgggaaagttaatgttagccattagattaaataaagaatacactcttatcatact 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 43236 - 43203
Alignment:
Q  211 tttcccatcatgggaaagtaagtcttaaccatta 244  Q
    ||||||||||||||||||||| ||||||||||||    
T  43236 tttcccatcatgggaaagtaaatcttaaccatta 43203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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