View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_low_1 (Length: 725)
Name: NF11134_low_1
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 272 - 698
Target Start/End: Original strand, 7926533 - 7926959
Alignment:
| Q |
272 |
caaccagtgttactgaaagtgtgaaaaatcaaacatctttctctcccatccttttcctcacaagaaacccatgaagccaattcctcagcaaaaatttcaa |
371 |
Q |
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| T |
7926533 |
caaccagtgttactgaaagtgtgaaaaatcaaacatctttctctcccatccttttcctcacaagaaacccatgaagccaattcctcagcaaaaatttcaa |
7926632 |
T |
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| Q |
372 |
nnnnnnnctcaagcacacgtccaaggtcaaatccaagaatctctttcacatcaacaacaaaagtaaccgcatgaaaaccacgtgaattgtaccattcagc |
471 |
Q |
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| T |
7926633 |
tttttttctcaagcacacgtccaaggtcaaatccaagaatctctttcacatcaacaacaaaagtaaccgcatgaaaaccacgtgaattgtaccattcagc |
7926732 |
T |
|
| Q |
472 |
atatcttttaaggtgtctggtttttgctccaagccaccccaacaaaaccaccgtaacaacacggtttttgtttccaccgtaaaaaccctcatttccgttt |
571 |
Q |
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| T |
7926733 |
atatcttttaaggtgtctggtttttgctccaagccaccccaacaaaaccaccgtaacaacacggtttttgtttccaccgtaaaaaccttcatttccgttt |
7926832 |
T |
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| Q |
572 |
tccaaagctgggttccaaacaatactagttgattgtgaatttgaggtaaaggggttgttgagagtgttattgggtattgaaaagttgagatttttagaag |
671 |
Q |
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| T |
7926833 |
tccaaagctgggttccaaacaatactagttgattgtgaatttgaggtaaaggggttgttgagagtgttattgggtattgaaaagttgagatttttagaag |
7926932 |
T |
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| Q |
672 |
atgtgagtgaagagaagaatctatgac |
698 |
Q |
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| T |
7926933 |
atgtgagtgaagagaagaatctatgac |
7926959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 7926279 - 7926433
Alignment:
| Q |
17 |
atctttttcaacaaccaaaaatgcttataaaatcaaattcttagaacctgaggattgaaaggctcagcccctccagaatcaacaatgcatgctttaatct |
116 |
Q |
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| T |
7926279 |
atctttttcaacaaccaaaaatgcttataaaatcaaattcttagaacctgaggattaaaaggctcagcccctccagaatcaacaatgcatgctttaatct |
7926378 |
T |
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| Q |
117 |
tctccataacaacattatgactatccatgaatctagcaagaatagaaccatacct |
171 |
Q |
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| T |
7926379 |
tctccataacaacattatgactatccatgaatctagcaagaatagaaccatacct |
7926433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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