View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_low_12 (Length: 381)
Name: NF11134_low_12
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 6264425 - 6264074
Alignment:
| Q |
19 |
tatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaat |
118 |
Q |
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| T |
6264425 |
tatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaat |
6264326 |
T |
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| Q |
119 |
ctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttag |
218 |
Q |
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| T |
6264325 |
ctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttag |
6264226 |
T |
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| Q |
219 |
ccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagtaattcaaggtatatcacta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264225 |
ccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagtaattcaaggtatatcacta |
6264126 |
T |
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| Q |
319 |
tatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
370 |
Q |
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| T |
6264125 |
tatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
6264074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 6451938 - 6451734
Alignment:
| Q |
23 |
ttccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaatctgt |
122 |
Q |
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| T |
6451938 |
ttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgt |
6451839 |
T |
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| Q |
123 |
a---tttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagc |
219 |
Q |
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| T |
6451838 |
aatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagc |
6451739 |
T |
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| Q |
220 |
caaat |
224 |
Q |
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||||| |
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| T |
6451738 |
caaat |
6451734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 6332929 - 6332876
Alignment:
| Q |
22 |
attccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttat |
75 |
Q |
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| T |
6332929 |
attccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttat |
6332876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 6457864 - 6457761
Alignment:
| Q |
184 |
gaaggaggaattaagctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagt |
283 |
Q |
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||||| || |||||||| || |||||||||||||| ||||||||||| ||||| | | ||||||||| | ||||| ||||||||| ||||||||| |
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| T |
6457864 |
gaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagt |
6457765 |
T |
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| Q |
284 |
ttcc |
287 |
Q |
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|||| |
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| T |
6457764 |
ttcc |
6457761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 311
Target Start/End: Complemental strand, 42694004 - 42693829
Alignment:
| Q |
136 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaattagtcctttac |
235 |
Q |
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|||||||| ||||| ||||||||||||||||| || | || | ||||| || ||||||||||| ||||||||| |||||||| | || ||||| |||| |
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| T |
42694004 |
ttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttac |
42693905 |
T |
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| Q |
236 |
cagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagtaattcaaggtat |
311 |
Q |
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| || | |||||||||| |||| ||||||||||| |||||||||| ||| ||||||||||| |||||||||| |
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| T |
42693904 |
ctgttctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccaccacctaaagtacttcaaggtat |
42693829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 42694120 - 42694063
Alignment:
| Q |
23 |
ttccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggact |
80 |
Q |
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| T |
42694120 |
ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggact |
42694063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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