View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_low_13 (Length: 365)
Name: NF11134_low_13
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 7938405 - 7938068
Alignment:
| Q |
9 |
aatgaactagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagcagtcagttaatctgggata |
108 |
Q |
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| T |
7938405 |
aatgaactagacctgatcatactgttgatgtttttccccatccttcaaaacctacaaacaataaa-gggaaatataccagcagtcagttaatctgggata |
7938307 |
T |
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| Q |
109 |
tgaaaatggatttaataagagatatgaactgtcaatgtaaaacaattttccactgacatccaatgaaagtctactattttgccacatcaccccacatttg |
208 |
Q |
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| T |
7938306 |
cgaaaatggatttaataagagatatgaactatcaatgtaaaacagttttccactgacatccaatgaaagtctactactttgccacatcaccccacatttg |
7938207 |
T |
|
| Q |
209 |
taatgatattttgaaaatggtggtatgactatgccatggaaaaatggtagtctgcattggatgtcaatgtaaaactgttttacagtgacagtgtatgctc |
308 |
Q |
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| T |
7938206 |
taatgatattttgaaaatggtggtatgactatgccatggaaaaatggtagtctgcattggatgtcaatgtaaaactgttttacagcgacagtgtatgctc |
7938107 |
T |
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| Q |
309 |
attagactctgaatttaagatagatatctggctctgggt |
347 |
Q |
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| T |
7938106 |
attagactttgaatttaagatagatatctggctctgggt |
7938068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 7925290 - 7925194
Alignment:
| Q |
16 |
tagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacaataaaagggaaatataccagcagtcagttaatctgggatatgaa |
112 |
Q |
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| T |
7925290 |
tagacctgatcatactgttgacgtttttccccatccttcaaaacctacaaacattaaaatggaaatataccagcagtcagttaattggggatatgaa |
7925194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 13133161 - 13133236
Alignment:
| Q |
162 |
tgacatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
237 |
Q |
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| T |
13133161 |
tgacacccaatgaaaatccactattttgccacatcaccccacttttgtaagggtattttgaaattggtggtatgac |
13133236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 13458493 - 13458544
Alignment:
| Q |
186 |
tttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
237 |
Q |
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| T |
13458493 |
tttgccacatcaccccacttttgtaaaggtattttgaaattggtggtatgac |
13458544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 17511350 - 17511404
Alignment:
| Q |
147 |
aaaacaattttccactgacatccaatgaaagtctactattttgccacatcacccc |
201 |
Q |
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| T |
17511350 |
aaaacagttttacactgacatccaatgaaaatccactactttgccacatcacccc |
17511404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 49250316 - 49250257
Alignment:
| Q |
164 |
acatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaa |
223 |
Q |
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| T |
49250316 |
acatccaatgaaaatccactattttgcaacatcaccccactttcgtaaagttattttgaa |
49250257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 8638706 - 8638660
Alignment:
| Q |
19 |
acctgatcatactgttgacgtttttccccatccttcaaaacctacaa |
65 |
Q |
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| T |
8638706 |
acctgatcatactcttgacgcttttcctcgtccttcaaaacctacaa |
8638660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 533370 - 533446
Alignment:
| Q |
161 |
ctgacatccaatgaaagtctactattttgccacatcaccccacatttgtaatgatattttgaaaatggtggtatgac |
237 |
Q |
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|||||||||||||||| || |||||||| ||| ||||| || |||||||| ||||||||| |||||||||||| |
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| T |
533370 |
ctgacatccaatgaaaatcctttattttgctacaacacccaactcttgtaatgtcattttgaaactggtggtatgac |
533446 |
T |
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