View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11134_low_18 (Length: 264)

Name: NF11134_low_18
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11134_low_18
NF11134_low_18
[»] chr7 (10 HSPs)
chr7 (1-244)||(46479060-46479303)
chr7 (1-244)||(46520490-46520733)
chr7 (1-246)||(46490260-46490505)
chr7 (3-199)||(46532154-46532350)
chr7 (1-200)||(46326465-46326664)
chr7 (1-200)||(46524600-46524799)
chr7 (1-246)||(46494558-46494803)
chr7 (1-200)||(46322760-46322959)
chr7 (1-244)||(46516849-46517092)
chr7 (192-246)||(46464931-46464985)
[»] chr3 (1 HSPs)
chr3 (90-200)||(7475308-7475418)
[»] chr4 (2 HSPs)
chr4 (1-107)||(88054-88157)
chr4 (69-106)||(49833648-49833685)
[»] chr1 (1 HSPs)
chr1 (1-107)||(37152073-37152176)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46479303 - 46479060
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479303 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 46479204  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479203 ccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 46479104  T
Q  201 atcttccacttggtgggtgatatcgttgctctcatcgactcact 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46479103 atcttccacttggtgggtgatatcgttgctctcatcgactcact 46479060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46520733 - 46520490
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520733 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 46520634  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520633 ccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 46520534  T
Q  201 atcttccacttggtgggtgatatcgttgctctcatcgactcact 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46520533 atcttccacttggtgggtgatatcgttgctctcatcgactcact 46520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 46490505 - 46490260
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| || |||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  46490505 aagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggtattcatggcgcca 46490406  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || || || || |||||||||    
T  46490405 ccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcctccattagtagctacaca 46490306  T
Q  201 atcttccacttggtgggtgatatcgttgctctcatcgactcacttg 246  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  46490305 atcttccatttggttggtgacatcgttgctctcatcgactcacttg 46490260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 46532350 - 46532154
Alignment:
Q  3 gtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgccacc 102  Q
    |||||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  46532350 gtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgccacc 46532251  T
Q  103 agattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacac 199  Q
    | |||| |||||||||||||||||||||||| || |||||||||||||| |||||||| || |||||||| |||||  |||||||||||||||||||    
T  46532250 aaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctccatcttcaataagcagctacac 46532154  T

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Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 46326465 - 46326664
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  46326465 aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgcca 46326564  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||||| || ||||| |||| |||  |||| || ||||||||||||    
T  46326565 ccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatgttccgtcttccattagcagctacaca 46326664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 46524799 - 46524600
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  46524799 aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggtattcatggcgcca 46524700  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    |||||||| ||||||  |||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||  ||||| | || |||||||||    
T  46524699 ccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagttagtagctacaca 46524600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 46494803 - 46494558
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| || |||||  ||||||||||||| ||||||||||||||||| || ||||||||    
T  46494803 aagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctggtactcttggcgcca 46494704  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || ||||| || ||||  |||  |||  ||| ||| || |||    
T  46494703 ccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatgtccccagttcggtaaacagttataca 46494604  T
Q  201 atcttccacttggtgggtgatatcgttgctctcatcgactcacttg 246  Q
    |||||||||||||| ||||| || ||||| ||||||||||| ||||    
T  46494603 atcttccacttggttggtgacattgttgcgctcatcgactcgcttg 46494558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 46322760 - 46322959
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  46322760 aagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtactcttggcgcca 46322859  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||| ||||| ||||| ||||| ||||| || || ||||| ||||| |||||||| || ||||| || |||||  ||||||||||||||||||||    
T  46322860 ccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccatcttcaataagcagctacaca 46322959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46517092 - 46516849
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||| |||||||||||    
T  46517092 aagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtactcatggcgcca 46516993  T
Q  101 ccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataagcagctacaca 200  Q
    ||||||||  |||||  ||||||| || |||||  | || |||||||||||  |||||||||| ||||| ||||||||| ||||| | || |||||||||    
T  46516992 ccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttcagttagtagctacaca 46516893  T
Q  201 atcttccacttggtgggtgatatcgttgctctcatcgactcact 244  Q
    || || || ||||| ||||||||||||||||| || ||||||||    
T  46516892 attttacatttggttggtgatatcgttgctctaattgactcact 46516849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 46464985 - 46464931
Alignment:
Q  192 agctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcacttg 246  Q
    |||||||||||||||||||| || ||||| |||||||||||||| ||||||||||    
T  46464985 agctacacaatcttccacttagttggtgacatcgttgctctcatagactcacttg 46464931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 7475308 - 7475418
Alignment:
Q  90 tcatggcgccaccagattgcagctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttcaataa 189  Q
    ||||||||||||||||||  ||||||  |||||||||| |||| ||  || ||| | ||||| |||||||| || ||||||||| ||||  |||||||||    
T  7475308 tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataa 7475407  T
Q  190 gcagctacaca 200  Q
    |||||||||||    
T  7475408 gcagctacaca 7475418  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 88054 - 88157
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||| |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| || ||||| || ||||||||    
T  88054 aagtaaatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagctatggtactcttggcgcca 88150  T
Q  101 ccagatt 107  Q
     ||||||    
T  88151 tcagatt 88157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 49833685 - 49833648
Alignment:
Q  69 ggcttccctgaactctggtattcatggcgccaccagat 106  Q
    ||||||||||| || |||||||||||||||||||||||    
T  49833685 ggcttccctgatctatggtattcatggcgccaccagat 49833648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 37152176 - 37152073
Alignment:
Q  1 aagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggtattcatggcgcca 100  Q
    |||| |||||||| ||||||||| |||||||||||||   |||||||||||| || ||| |  | ||||| |||||||| || ||||| || ||||||||    
T  37152176 aagtaaatggcattaaaatgcatgttgcagagaaagg---agaaggtccagtggtgttgatgttgcacggtttccctgagctatggtactcttggcgcca 37152080  T
Q  101 ccagatt 107  Q
     ||||||    
T  37152079 tcagatt 37152073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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