View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_low_19 (Length: 251)
Name: NF11134_low_19
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7153661 - 7153410
Alignment:
| Q |
1 |
aacttatgaaaggttgcagcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgcttttta |
100 |
Q |
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| T |
7153661 |
aacttatgaaaggttgcagcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgcttttta |
7153562 |
T |
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| Q |
101 |
attagaataatataaagtggtcatagatctcatcttcagaaaattgaaatgttagat----tttgttgaaggtgttatgagagctatatggttgctttgt |
196 |
Q |
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| T |
7153561 |
attagaataatataaagtggtcatagatctcatcttcagaaaattgaaatgttagatttaatttgttgaaggtgttatgagagctatatggttgctttgt |
7153462 |
T |
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| Q |
197 |
gtttggttgtattgt----actagagtcaatataagtcataaatctctgctt |
244 |
Q |
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| T |
7153461 |
gtttggttgtattgtataaactatagtcaatataagtcataaatctctgctt |
7153410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 7159729 - 7159548
Alignment:
| Q |
29 |
tggaaccaatgtgtgtatttgtgtgtatg--agtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatag |
126 |
Q |
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|||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||| || |||||| ||||||||||| | |||||||| | |
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| T |
7159729 |
tggaaccaatatgtgtaattgtgtgtatattagtacacatttaatatataagaagcatgtgt--ttccttttt---tagaataatatgaggtggtcatgg |
7159635 |
T |
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| Q |
127 |
atctcatcttcagaaaattgaaatgtt---agattttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgta |
212 |
Q |
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| T |
7159634 |
atctaaccttcatcaaattcaaatgttcttagattttgttgaaggtgttatgagagc--tatgatcgctttgtgtttggttgtcttgta |
7159548 |
T |
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