View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11134_low_25 (Length: 229)
Name: NF11134_low_25
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11134_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 38371708 - 38371834
Alignment:
| Q |
15 |
agcataggcttaaaagaaacaaagtggagaaacagtggtgcttcattctgattgaagacgataatgcgtaatgcaccgctgcaattgtcagctccggtaa |
114 |
Q |
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| T |
38371708 |
agcataggcttaaaagaaacaaagtggagaaacggtggtgcttcattctgattgaagacgataatgcgtaatgcaccgccgcaattgtcagctccggtaa |
38371807 |
T |
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| Q |
115 |
attcggagaccagggaaaatagttgac |
141 |
Q |
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| T |
38371808 |
attcggagaccagcgaaaatagttgac |
38371834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 38371855 - 38371894
Alignment:
| Q |
168 |
aactgatgtagccgacactttgtttgatggtggcaaaggt |
207 |
Q |
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| T |
38371855 |
aactgatgtagccgacactttgtttgatggtggcaaaggt |
38371894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 38365671 - 38365729
Alignment:
| Q |
15 |
agcataggcttaaaagaaacaaagtggagaaacagtggtgcttcattctgattgaagac |
73 |
Q |
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| T |
38365671 |
agcataagcttaaaagaaacaagacggagacacggtggtgcttcattctgattgaagac |
38365729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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