View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11134_low_4 (Length: 526)

Name: NF11134_low_4
Description: NF11134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11134_low_4
NF11134_low_4
[»] chr4 (9 HSPs)
chr4 (19-520)||(35106972-35107501)
chr4 (314-520)||(35072682-35072888)
chr4 (314-518)||(35097796-35098000)
chr4 (314-518)||(35098085-35098289)
chr4 (315-510)||(36940478-36940673)
chr4 (367-518)||(36296508-36296659)
chr4 (355-510)||(36961351-36961507)
chr4 (313-428)||(36935858-36935974)
chr4 (391-439)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (312-520)||(24040736-24040944)
chr6 (314-518)||(24014181-24014385)
[»] chr5 (1 HSPs)
chr5 (355-449)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 35107501 - 35106972
Alignment:
Q  19 aatacataattttaatgacaattagttacagtaccaatgtcatctgccattgagctcattaaaagtctgtcttgaaaatggtttacaaagtataaggcca 118  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107501 aatacataattttaatgacaatcagttacagtaccaatttcatctgccattgagctcattaaaagtctgtcttgaaaatggtttacaaagtataaggcca 35107402  T
Q  119 actatgtataacaccaagtattccttggaatacaaatactaatataacaccaagaagaataacaactgtttacttattcatttatggattaacatctcac 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107401 actaagtataacaccaagtattccttggaatacaaatactaatataacaccaagaagaataacaactgtttacttattcatttatggattaacatctcac 35107302  T
Q  219 atattacatcatcatag-----atttcttgcacagacatcacaaacaaagtaagcattacaaaacaa----------------------acaaaagacga 291  Q
    ||||||||| || | |      ||| |||||||||||||||||||||||||||||||||||||||||                      |||||||||||    
T  35107301 atattacattataacaccaagtattccttgcacagacatcacaaacaaagtaagcattacaaaacaaccaaaaaaagcacacgaattaaacaaaagacga 35107202  T
Q  292 gtaacaaagcttgttctgagtt-aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattc 390  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35107201 gtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattc 35107102  T
Q  391 tccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcat 490  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107101 tccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcat 35107002  T
Q  491 tcttatcttctttttcaacgttcatctcac 520  Q
    |||||||||||||||||| |||| ||||||    
T  35107001 tcttatcttctttttcaaagttcctctcac 35106972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 314 - 520
Target Start/End: Original strand, 35072682 - 35072888
Alignment:
Q  314 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 413  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  414 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 513  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttc 35072881  T
Q  514 atctcac 520  Q
     ||||||    
T  35072882 ctctcac 35072888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 314 - 518
Target Start/End: Complemental strand, 35098000 - 35097796
Alignment:
Q  314 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 413  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  414 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 513  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35097900 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35097801  T
Q  514 atctc 518  Q
     ||||    
T  35097800 ctctc 35097796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 314 - 518
Target Start/End: Complemental strand, 35098289 - 35098085
Alignment:
Q  314 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 413  Q
    ||||||||||||||||||  || |  |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  414 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 513  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  35098189 cattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattc 35098090  T
Q  514 atctc 518  Q
     ||||    
T  35098089 ctctc 35098085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 315 - 510
Target Start/End: Original strand, 36940478 - 36940673
Alignment:
Q  315 accagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 414  Q
    ||||||||| ||||||| ||| | |||| | |||||||||||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  415 attttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 510  Q
    ||||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacg 36940673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 367 - 518
Target Start/End: Original strand, 36296508 - 36296659
Alignment:
Q  367 acagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctac 466  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||    
T  36296508 acagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctac 36296607  T
Q  467 gctccacacgatgccattgatcattcttatcttctttttcaacgttcatctc 518  Q
    ||||||| ||||||||||| |  ||||| |||||||| ||||||||| ||||    
T  36296608 gctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctc 36296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 355 - 510
Target Start/End: Complemental strand, 36961507 - 36961351
Alignment:
Q  355 tcttccttagggacagtgacagtgagaacaccattctccattgca-gctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaat 453  Q
    ||||||||||| | ||| |||||||||||||||||||||  ||   || ||||| |||||||| || ||||||||||  ||||||||| |||||||||||    
T  36961507 tcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatccatcttagcattctctgccaatctaaacttcctcatgaat 36961408  T
Q  454 tttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 510  Q
    || ||||||||| ||||||| | |||||||| ||  |||||||||||||| ||||||    
T  36961407 ttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacg 36961351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  313 taaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctcca-ttgcagctttcacttga 411  Q
    ||||||||||| |||||||  || | |||||||||||| | |||||| |  || || || |||||||||||||||||||||| |||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  412 tccattttcgcattctc 428  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 36953720 - 36953768
Alignment:
Q  391 tccattgcagctttcacttgatccattttcgcattctctggtaatctaa 439  Q
    |||||||||||||||||||||||| |||| ||||| || || |||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatctaa 36953768  T

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Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 312 - 520
Target Start/End: Original strand, 24040736 - 24040944
Alignment:
Q  312 ttaaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttga 411  Q
    |||||||||||| |||||||  || | || ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24040736 ttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttga 24040835  T
Q  412 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040836 tccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgt 24040935  T
Q  512 tcatctcac 520  Q
    || ||||||    
T  24040936 tcctctcac 24040944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 314 - 518
Target Start/End: Original strand, 24014181 - 24014385
Alignment:
Q  314 aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 413  Q
    ||||||||||||| ||||  || |  ||||| ||||| |  ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  414 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 513  Q
    |||||||||||| || || || || || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattc 24014380  T
Q  514 atctc 518  Q
     ||||    
T  24014381 ctctc 24014385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 34919235 - 34919141
Alignment:
Q  355 tcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 449  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919235 tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

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