View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11135_high_5 (Length: 241)
Name: NF11135_high_5
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11135_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 32813325 - 32813548
Alignment:
| Q |
17 |
agaagtcacttccttaagtttccgactacataagcagcatatagatccctgcnnnnnnnnnnnnnnnnnnnnnnttcatgtatgaaatctaaatgaatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
32813325 |
agaagtcacttccttaagtttccgactacataagcagcatatagatccctgcaaaaaaagagagagaaaaaaa-ttcatgtgtgaaatctaaatgaatca |
32813423 |
T |
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| Q |
117 |
tttgatcaccaatggaaaaagtagaagctatcaacaaaggataggagctcacatggagtgttcaatagccttaacagcagcttcagctggtagaaagtct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32813424 |
tttgatcaccaatggaaaaagtagaagctatcaacaaaggataggagctcacatggagtgttcaatagccttaacagcagcttcagctggtagaaagtct |
32813523 |
T |
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| Q |
217 |
tcaacattgactattttgttctcat |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
32813524 |
tcaacattgactattttgttctcat |
32813548 |
T |
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