View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11135_high_6 (Length: 240)

Name: NF11135_high_6
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11135_high_6
NF11135_high_6
[»] chr7 (36 HSPs)
chr7 (68-224)||(21237407-21237563)
chr7 (103-202)||(524526-524625)
chr7 (98-203)||(27214849-27214953)
chr7 (98-203)||(26956163-26956267)
chr7 (103-203)||(27456652-27456753)
chr7 (109-203)||(40849188-40849284)
chr7 (98-221)||(43202735-43202856)
chr7 (109-203)||(47646418-47646512)
chr7 (112-196)||(11399456-11399540)
chr7 (98-203)||(23033001-23033106)
chr7 (97-182)||(26524545-26524629)
chr7 (97-203)||(8117939-8118044)
chr7 (110-203)||(20334925-20335018)
chr7 (98-221)||(29211258-29211376)
chr7 (119-203)||(16535405-16535489)
chr7 (119-203)||(16630173-16630257)
chr7 (98-162)||(26214803-26214867)
chr7 (128-203)||(1812830-1812905)
chr7 (132-222)||(33435336-33435424)
chr7 (125-203)||(6879754-6879832)
chr7 (109-203)||(22298863-22298956)
chr7 (139-221)||(2734686-2734767)
chr7 (139-203)||(7697653-7697717)
chr7 (157-224)||(26208926-26208991)
chr7 (104-203)||(46147537-46147635)
chr7 (162-200)||(8568209-8568247)
chr7 (98-203)||(11834120-11834226)
chr7 (106-199)||(36550794-36550886)
chr7 (117-189)||(31011436-31011507)
chr7 (98-203)||(23675698-23675794)
chr7 (130-203)||(23410875-23410948)
chr7 (110-147)||(33434433-33434470)
chr7 (121-189)||(35495750-35495819)
chr7 (163-203)||(10338458-10338498)
chr7 (128-203)||(25007611-25007687)
chr7 (147-203)||(48643156-48643211)
[»] chr6 (19 HSPs)
chr6 (109-221)||(32190324-32190434)
chr6 (98-203)||(892000-892105)
chr6 (108-203)||(8064819-8064913)
chr6 (98-203)||(19134761-19134866)
chr6 (116-203)||(4577429-4577517)
chr6 (105-203)||(12108237-12108335)
chr6 (128-203)||(16971412-16971487)
chr6 (98-201)||(14564745-14564847)
chr6 (98-203)||(9686368-9686474)
chr6 (98-203)||(7169738-7169846)
chr6 (109-186)||(28633275-28633352)
chr6 (98-203)||(29048867-29048971)
chr6 (98-224)||(22414129-22414254)
chr6 (165-203)||(13531929-13531967)
chr6 (109-203)||(24644612-24644706)
chr6 (110-224)||(6400158-6400271)
chr6 (111-203)||(13092330-13092422)
chr6 (138-224)||(17306718-17306799)
chr6 (109-203)||(30752902-30752995)
[»] scaffold0204 (2 HSPs)
scaffold0204 (109-203)||(26197-26291)
scaffold0204 (104-203)||(14850-14949)
[»] chr4 (38 HSPs)
chr4 (109-203)||(48338675-48338769)
chr4 (98-203)||(18536317-18536422)
chr4 (109-203)||(46471758-46471852)
chr4 (104-203)||(36106127-36106227)
chr4 (109-189)||(41325727-41325807)
chr4 (109-203)||(20986731-20986825)
chr4 (98-224)||(32222952-32223074)
chr4 (98-203)||(45464479-45464581)
chr4 (119-202)||(41312330-41312413)
chr4 (109-203)||(29233081-29233175)
chr4 (109-221)||(49641164-49641275)
chr4 (109-212)||(3666719-3666820)
chr4 (109-197)||(18399355-18399443)
chr4 (98-203)||(8484994-8485104)
chr4 (110-203)||(35232953-35233046)
chr4 (109-189)||(53934979-53935059)
chr4 (103-203)||(6102213-6102312)
chr4 (103-178)||(35014600-35014675)
chr4 (125-203)||(14867114-14867192)
chr4 (98-196)||(23625563-23625661)
chr4 (157-203)||(29701013-29701059)
chr4 (107-181)||(40494742-40494816)
chr4 (110-203)||(4689013-4689106)
chr4 (109-187)||(21069388-21069468)
chr4 (117-178)||(41260448-41260509)
chr4 (147-204)||(45983714-45983771)
chr4 (98-178)||(5122063-5122143)
chr4 (106-181)||(4054476-4054551)
chr4 (162-205)||(15724236-15724279)
chr4 (109-174)||(27743532-27743598)
chr4 (98-203)||(48602166-48602272)
chr4 (142-222)||(18319226-18319304)
chr4 (142-222)||(18396685-18396763)
chr4 (170-203)||(25686129-25686162)
chr4 (109-182)||(7783865-7783939)
chr4 (161-205)||(23119944-23119988)
chr4 (98-146)||(45226693-45226741)
chr4 (161-216)||(48685135-48685188)
[»] chr1 (33 HSPs)
chr1 (98-203)||(6248394-6248499)
chr1 (98-203)||(36203106-36203211)
chr1 (98-223)||(10847166-10847289)
chr1 (98-203)||(35979932-35980036)
chr1 (139-224)||(8269007-8269090)
chr1 (98-203)||(17989365-17989470)
chr1 (98-203)||(52380391-52380496)
chr1 (125-203)||(9330746-9330824)
chr1 (113-203)||(40094823-40094913)
chr1 (109-182)||(9249768-9249841)
chr1 (98-203)||(35992255-35992359)
chr1 (109-197)||(25559682-25559770)
chr1 (125-203)||(23474759-23474838)
chr1 (112-203)||(26344705-26344796)
chr1 (109-187)||(12973899-12973977)
chr1 (109-203)||(27507169-27507263)
chr1 (98-203)||(35375487-35375593)
chr1 (98-177)||(19051442-19051521)
chr1 (98-203)||(21685209-21685315)
chr1 (98-199)||(17652066-17652166)
chr1 (130-203)||(18310319-18310392)
chr1 (109-203)||(36782027-36782123)
chr1 (98-203)||(50471420-50471524)
chr1 (109-203)||(3937095-3937186)
chr1 (109-203)||(6693760-6693852)
chr1 (98-199)||(25507198-25507298)
chr1 (98-203)||(44056054-44056159)
chr1 (163-203)||(16063196-16063236)
chr1 (117-181)||(39157989-39158053)
chr1 (142-224)||(18834199-18834279)
chr1 (103-221)||(13056176-13056291)
chr1 (109-178)||(39166882-39166951)
chr1 (130-203)||(50951663-50951736)
[»] chr2 (20 HSPs)
chr2 (103-203)||(13194228-13194330)
chr2 (98-203)||(15320247-15320352)
chr2 (103-203)||(22014286-22014385)
chr2 (98-221)||(41166475-41166596)
chr2 (98-203)||(31719737-31719841)
chr2 (98-199)||(5862318-5862420)
chr2 (109-202)||(10242408-10242502)
chr2 (114-203)||(27301149-27301238)
chr2 (113-178)||(36964322-36964387)
chr2 (114-182)||(17763083-17763151)
chr2 (104-203)||(20496714-20496813)
chr2 (109-220)||(36500270-36500377)
chr2 (147-203)||(44085859-44085915)
chr2 (112-202)||(12041249-12041340)
chr2 (129-191)||(12841694-12841756)
chr2 (98-203)||(1331314-1331417)
chr2 (98-182)||(11051084-11051170)
chr2 (161-203)||(27898717-27898759)
chr2 (108-202)||(41983871-41983964)
chr2 (104-181)||(34572627-34572703)
[»] chr5 (36 HSPs)
chr5 (98-223)||(2796462-2796585)
chr5 (109-202)||(42920696-42920789)
chr5 (103-190)||(12378751-12378839)
chr5 (98-203)||(6633624-6633729)
chr5 (98-223)||(2802623-2802746)
chr5 (98-203)||(41805481-41805586)
chr5 (98-186)||(40692777-40692865)
chr5 (98-189)||(38176151-38176242)
chr5 (98-189)||(38203375-38203466)
chr5 (98-188)||(18845838-18845927)
chr5 (125-203)||(22553705-22553783)
chr5 (109-203)||(41455205-41455299)
chr5 (98-203)||(18432410-18432515)
chr5 (143-203)||(2589361-2589420)
chr5 (109-203)||(2423142-2423234)
chr5 (103-224)||(10090555-10090674)
chr5 (109-203)||(36568047-36568140)
chr5 (114-189)||(34111451-34111523)
chr5 (147-203)||(11402967-11403023)
chr5 (104-178)||(32721088-32721163)
chr5 (125-199)||(38147459-38147533)
chr5 (106-203)||(4414550-4414646)
chr5 (109-181)||(31075299-31075372)
chr5 (106-199)||(35727301-35727393)
chr5 (98-203)||(39052877-39052982)
chr5 (107-183)||(26690138-26690214)
chr5 (107-183)||(26959870-26959946)
chr5 (162-205)||(691252-691295)
chr5 (127-201)||(23418318-23418392)
chr5 (111-201)||(8541986-8542077)
chr5 (128-199)||(28224520-28224593)
chr5 (98-147)||(40109332-40109381)
chr5 (125-205)||(6595293-6595373)
chr5 (163-203)||(25495478-25495518)
chr5 (98-196)||(25715571-25715665)
chr5 (128-203)||(34880977-34881051)
[»] chr8 (24 HSPs)
chr8 (98-203)||(28441790-28441895)
chr8 (100-203)||(40436760-40436863)
chr8 (103-189)||(9012506-9012592)
chr8 (98-203)||(12193119-12193222)
chr8 (98-203)||(12437547-12437650)
chr8 (98-203)||(27674840-27674945)
chr8 (129-203)||(1271485-1271559)
chr8 (110-203)||(15452323-15452416)
chr8 (125-203)||(12659927-12660004)
chr8 (98-203)||(44337069-44337174)
chr8 (98-189)||(24681758-24681850)
chr8 (109-203)||(11219287-11219382)
chr8 (103-203)||(30252726-30252828)
chr8 (109-183)||(4785572-4785646)
chr8 (109-199)||(18754985-18755075)
chr8 (109-203)||(41346242-41346336)
chr8 (112-203)||(12073877-12073968)
chr8 (162-205)||(31477847-31477890)
chr8 (98-152)||(3129357-3129411)
chr8 (106-203)||(28801899-28801999)
chr8 (161-222)||(30942944-30943003)
chr8 (161-203)||(44024560-44024602)
chr8 (163-203)||(3155681-3155721)
chr8 (111-179)||(39151998-39152065)
[»] chr3 (24 HSPs)
chr3 (98-203)||(2832042-2832147)
chr3 (98-203)||(44651283-44651388)
chr3 (98-199)||(54122643-54122744)
chr3 (109-203)||(45629524-45629618)
chr3 (113-203)||(51660658-51660748)
chr3 (98-193)||(17144399-17144495)
chr3 (125-205)||(38651684-38651764)
chr3 (109-203)||(55467299-55467391)
chr3 (109-203)||(22472721-22472815)
chr3 (114-199)||(4280624-4280709)
chr3 (128-217)||(2565976-2566064)
chr3 (128-203)||(26758580-26758655)
chr3 (103-203)||(37045636-37045737)
chr3 (109-203)||(21562884-21562977)
chr3 (98-203)||(22255954-22256060)
chr3 (109-203)||(48169004-48169098)
chr3 (98-203)||(25918910-25919014)
chr3 (104-203)||(42362876-42362973)
chr3 (109-203)||(52632459-52632556)
chr3 (98-203)||(8355649-8355755)
chr3 (109-182)||(20846806-20846879)
chr3 (162-221)||(38681600-38681657)
chr3 (161-203)||(50578655-50578697)
chr3 (163-203)||(46253108-46253148)
[»] scaffold0001 (2 HSPs)
scaffold0001 (109-203)||(427977-428071)
scaffold0001 (166-203)||(405822-405859)
[»] scaffold0664 (1 HSPs)
scaffold0664 (125-203)||(6329-6407)
[»] scaffold0688 (4 HSPs)
scaffold0688 (119-189)||(1515-1585)
scaffold0688 (119-189)||(3109-3178)
scaffold0688 (119-189)||(4776-4845)
scaffold0688 (119-189)||(8084-8154)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 21237563 - 21237407
Alignment:
Q  68 gactaagatttcatctttataagttcaaaatcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237563 gactaagatttcatctttataagttcaaaatcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtc 21237464  T
Q  168 attttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237463 attttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 21237407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 524625 - 524526
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||||||| || ||| |||||| |||||||||||||||||||||| ||||||||||||    
T  524625 tagcatataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgttattttataaaagtttccattgagtttctatgagta 524526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 27214953 - 27214849
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||||| ||| |||||||||||||||  | |||||| ||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  27214953 tcaaattgcacataaatacatttttgagaaaaaaagcaaagaagaaacttaacaaaagataatatatgtca-tttataaaagtttccattgaatttctat 27214855  T
Q  198 gagtat 203  Q
    ||||||    
T  27214854 gagtat 27214849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 26956163 - 26956267
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||||||||||| ||||||||||||| |||| | ||||||     
T  26956163 tcaaatagcatataaatacatttttcaaataaaaagtaaagaagaaacttaacaaaaaaaaatatatgtca-tttataaaagtttacattaagtttctac 26956261  T
Q  198 gagtat 203  Q
    ||||||    
T  26956262 gagtat 26956267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 27456652 - 27456753
Alignment:
Q  103 tagcatataaatacatttttggaataaaaag-aaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagt 201  Q
    ||||| ||||||||||||||  ||||||||| |||| |||||||||||||| || ||| ||||||||||||| |||||||| |||||| |||||||||||    
T  27456652 tagcacataaatacattttttaaataaaaagcaaaagaagaaacttaacaagagaaaaaatatgtcattttacaaaagttttcattgagtttctatgagt 27456751  T
Q  202 at 203  Q
    ||    
T  27456752 at 27456753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 40849188 - 40849284
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata--tatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| || ||| |  |||||| ||||||||||||||||||||| |||||||||||||    
T  40849188 ataaatacatttttgaaataaaaagcaaaaaagaaacttaacaacagaaaaaaaatatgtcgttttataaaagtttccattgagtttctatgagtat 40849284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 43202735 - 43202856
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| ||||||||| ||| |||||||||||||| || ||| |||||| ||| ||||||||||| |||||| ||| ||     
T  43202735 tcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgttattatataaaagttttcattgagtttatac 43202834  T
Q  198 gagtatattagtctagatgacata 221  Q
    |||  |||| ||||||||||||||    
T  43202835 gag--tattggtctagatgacata 43202856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 47646512 - 47646418
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||| || ||| |||||||||||||| ||| ||||||| || |||||||||||||    
T  47646512 ataaatacattttttaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttattaaaatttccatcgagtttctatgagtat 47646418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 11399456 - 11399540
Alignment:
Q  112 aatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||||||||| | ||||||||| ||  |||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||    
T  11399456 aatacattttagaaataaaaagcaacgaagaaacttaacaagagacaaaatatgtcattttataaaagtttccattgaatttcta 11399540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 23033001 - 23033106
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||||| ||||||||| ||| || ||||||||||| || ||| |||| ||||||| ||| ||||||| |||| |||||||    
T  23033001 tcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatttcattttgtaagagtttccgttgagtttctat 23033100  T
Q  198 gagtat 203  Q
    ||||||    
T  23033101 gagtat 23033106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 26524629 - 26524545
Alignment:
Q  97 atcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagttt 182  Q
    ||||||||||| ||||| ||||||||| |||||| || ||| ||||||||||  |||||||||||||||||| |||||||||||||    
T  26524629 atcaaatagcacataaaaacatttttgaaataaagagtaaaaaagaaacttacaaaaaggaaatatatgtca-tttataaaagttt 26524545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 8118044 - 8117939
Alignment:
Q  97 atcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    ||||| ||||| |||||||| |||||| ||||||||| ||| ||  |||| |||||||| ||| |||| ||||||||||| |||||||||||| ||| ||    
T  8118044 atcaagtagcacataaatacgtttttgaaataaaaagcaaagaatgaactaaacaaaagaaaaaatat-tcattttataagagtttccattgagtttata 8117946  T
Q  197 tgagtat 203  Q
    |||||||    
T  8117945 tgagtat 8117939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 20334925 - 20335018
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||    |||||| ||| ||||||| |||||| || ||| |||||||| ||||| ||||||| ||||||||||||||||||||    
T  20334925 taaatacatttttgatcgaaaaagcaaaaaagaaacataacaagagaaaaaatatgtcaatttattaaagttttcattgaatttctatgagtat 20335018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 29211376 - 29211258
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||  ||||||| ||||| |||||||||||||| || ||  ||||  |||||||||||||||| |||||| |||||||    
T  29211376 tcaagtagcacataaatacatttttaaaataaaa-gaaaagaagaaacttaacaagagaaacaatat--cattttataaaagttttcattgagtttctat 29211280  T
Q  198 gagtatattagtctagatgacata 221  Q
    ||  ||||| |||||| |||||||    
T  29211279 ga--atattggtctaggtgacata 29211258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 16535489 - 16535405
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| |||||||||  || |||||||||| ||| || ||| ||||||||||||| ||||||||||||||| ||||||| |||||    
T  16535489 ttttgcaataaaaagctaagaagaaacttatcaagagaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtat 16535405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 16630173 - 16630257
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| |||||||||  || |||||||||| ||| || ||| ||||||||||||| ||||||||||||||| ||||||| |||||    
T  16630173 ttttgcaataaaaagctaagaagaaacttatcaagagaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtat 16630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 26214867 - 26214803
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatat 162  Q
    |||||||||| || |||||||||||| ||||||||| ||| ||||||||||||||||| ||||||    
T  26214867 tcaaatagcacatgaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaatat 26214803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 1812830 - 1812905
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| ||| |||||||| ||||| || ||| |||||||||||||| ||| ||| ||||||||||||||||||||    
T  1812830 aaaaagcaaagaagaaactcaacaagagaaaaaatatgtcattttattaaaattttcattgaatttctatgagtat 1812905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 33435336 - 33435424
Alignment:
Q  132 agaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatat 222  Q
    |||||| |||||||||||||| || ||| | |||||||||||||||||||  |||||| |||||||||  || ||||| ||||||||||||    
T  33435336 agaaaagaagaaacttaacaagagaaaaaacatgtcattttataaaagttcacattgagtttctatga--attttagtatagatgacatat 33435424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 6879832 - 6879754
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||  ||| |||||||||||||| || ||| |||||||||||||| ||||||| ||||||  ||||||||||||    
T  6879832 aataaaaaataaagaagaaacttaacaagagaaaaaatatgtcattttattaaagttttcattgagcttctatgagtat 6879754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 22298863 - 22298956
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||| |||||||  | |||||| ||| |||||||||||||| || ||| || ||||||||| | ||||||| ||||||||||||||||||||    
T  22298863 ataaataaatttttgatagaaaaagcaaaaaagaaacttaacaagagaaaaaat-tgtcattttgttaaagttttcattgaatttctatgagtat 22298956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 2734686 - 2734767
Alignment:
Q  139 aagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacata 221  Q
    |||||||||||||| || ||| | ||||||||||||||||||| | |||||| ||||||||||  |||| ||||||||||||||    
T  2734686 aagaaacttaacaagagaaaaaaatatgtcattttataaaagtattcattgagtttctatgag--tattggtctagatgacata 2734767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 7697653 - 7697717
Alignment:
Q  139 aagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||| || ||| ||||||| |||||| ||||||| |||||| |||||||||||||    
T  7697653 aagaaacttaacaatagaaaaaatatgtctttttattaaagttttcattgagtttctatgagtat 7697717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 26208991 - 26208926
Alignment:
Q  157 aaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 224  Q
    |||||||||||||||||||||||||| | |||| ||||||||||  |||| || ||||||||||||||    
T  26208991 aaatatatgtcattttataaaagttttcgttgattttctatgag--tattggtttagatgacatatat 26208926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 46147537 - 46147635
Alignment:
Q  104 agcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| ||||||| |||||| |||||||||| ||| ||||||||||||||    |||  ||||||| ||||||||||||||||| || ||| |||||||||    
T  46147537 agcacataaatatattttttgaataaaaagcaaagaagaaacttaacaagcaaaaaagtatgtca-tttataaaagtttccatcgagtttttatgagtat 46147635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 8568247 - 8568209
Alignment:
Q  162 tatgtcattttataaaagtttccattgaatttctatgag 200  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  8568247 tatgtcattttattaaagtttccattgaatttctatgag 8568209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 11834226 - 11834120
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatat-atgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||| |||||||  | |||||  ||| |||||||||| ||| || ||| |  ||||||| |||| |||||||||||||||||||||    
T  11834226 tcaagtagcacataaatatatttttgatagaaaaaacaaagaagaaacttagcaagagaaaaaaagatgtcatattattaaagtttccattgaatttcta 11834127  T
Q  197 tgagtat 203  Q
    |||||||    
T  11834126 tgagtat 11834120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 36550794 - 36550886
Alignment:
Q  106 catataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    |||||||||||| ||| | ||||||||  ||| ||||| |||||||| || ||| |||||||||||||||||| |||| |||||  ||||||||    
T  36550794 catataaatacagttt-gaaataaaaaacaaagaagaagcttaacaagagaaaaaatatgtcattttataaaaatttcaattgagcttctatga 36550886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 31011507 - 31011436
Alignment:
Q  117 atttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||||| ||||||||| | | |||||||||||||| || ||| |||| | ||||||||||||||||||||||    
T  31011507 atttttgaaataaaaagtatagaagaaacttaacaagagaaaa-atatcttattttataaaagtttccattga 31011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 23675698 - 23675794
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    ||||||||||||||||||||||||||     ||||||||| || ||||||||||| |||| | |||| ||||| |||||   ||| |||||| |||||||    
T  23675698 tcaaatagcatataaatacatttttg-----aaaagaaaa-aaaaaacttaacaagaggataaatatatcattctataa---ttttcattgagtttctat 23675788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 23410948 - 23410875
Alignment:
Q  130 aaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| ||| |||||||||||||| || ||| |||| |||||||||| |||||   ||||| |||||||||||||    
T  23410948 aaagcaaagaagaaacttaacaagagaaaaaatatttcattttatagaagttcttattgagtttctatgagtat 23410875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 33434433 - 33434470
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaactt 147  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  33434433 taaatacatttttgaaataaaaagaaaagaagaaactt 33434470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 35495750 - 35495819
Alignment:
Q  121 ttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattga 189  Q
    ||||||| ||||| ||| |||||||||||||| || ||| | |||||  |||||||||||||||||||||    
T  35495750 ttggaatgaaaagcaaagaagaaacttaacaagagaaaaaaatatgttgttttataaaagtttccattga 35495819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 10338498 - 10338458
Alignment:
Q  163 atgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| |||||||||||||||||| || ||||||    
T  10338498 atgtcattttattaaagtttccattgaatttttacgagtat 10338458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 25007611 - 25007687
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaatata-tgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| ||| |||||||||||||| || ||| | | ||||||||||| ||| ||| |||| |||||||||||||||    
T  25007611 aaaaagtaaagaagaaacttaacaagagaaaaaaaaatgtcattttattaaaattttcatttaatttctatgagtat 25007687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 48643156 - 48643211
Alignment:
Q  147 taacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| || ||| ||||||||||||||||| |||| |||||| |||||||||||||    
T  48643156 taacaagagaaaaaatatgtcattttataaa-gttttcattgagtttctatgagtat 48643211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 32190434 - 32190324
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattag 208  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||  |||||||    
T  32190434 ataaatacatttttgaaataaaaagaaaagaagaaacttaacaagagaaaaaatatgtcattttataaaagtttccattgagtttctatga--atattag 32190337  T
Q  209 tctagatgacata 221  Q
    ||||| |||||||    
T  32190336 tctaggtgacata 32190324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 892105 - 892000
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| ||||||||| | | |||||||||||||| || ||| | ||||||||||||||||||||||||||| |||||||    
T  892105 tcaagtagcacataaatacatttttgaaataaaaagtagagaagaaacttaacaagagaaaaaacatgtcattttataaaagtttccattgagtttctat 892006  T
Q  198 gagtat 203  Q
     |||||    
T  892005 aagtat 892000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 8064819 - 8064913
Alignment:
Q  108 tataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||| ||||||||  ||| || |||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||||    
T  8064819 tataaatacatttttgaaataaaaatcaaagaaaaaacttaacaaaagaaaatatatgtca-tttataaaagttttcattgagtttctatgagtat 8064913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 19134866 - 19134761
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaaga-aaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||| |||||||| | ||| |||||||||||||| || ||| ||||||||||| ||||||||||||||| | ||||||    
T  19134866 tcaagtagcacataaatacatttttgaaataaaaaaacaaagaagaaacttaacaagagaaaaaatatgtcattt-ataaaagtttccattaagtttcta 19134768  T
Q  197 tgagtat 203  Q
    |||||||    
T  19134767 tgagtat 19134761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 4577429 - 4577517
Alignment:
Q  116 catttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||| ||||||||| ||| |||||| ||||||| || ||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  4577429 catttttgaaataaaaagtaaagaagaaaattaacaagagaaaataatatgtcgttttataaaagttttcattgaatttctatgagtat 4577517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 12108335 - 12108237
Alignment:
Q  105 gcatataaatacatttttgga-ataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||||| || |||||||  ||| |||||||||||||| || ||| |||||||||||||||||| ||| |||||| |||||||||||||    
T  12108335 gcatataaatacattttttgacataaaaatcaaagaagaaacttaacaagagaaaaaatatgtcattttataaaa-ttttcattgagtttctatgagtat 12108237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 16971487 - 16971412
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| |||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||  |||||||||||||    
T  16971487 aaaaaaaaaagaagaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattgtgtttctatgagtat 16971412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 14564745 - 14564847
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||  |||| ||||| ||  |||||| ||||||||| |||||| ||| |||    
T  14564745 tcaaatagcacataaatacatttttgaaataaaaagcaaagaagaaacttaa-taaagaaaatacattgcattttttaaaagttttcattgagtttttat 14564843  T
Q  198 gagt 201  Q
    ||||    
T  14564844 gagt 14564847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 9686368 - 9686474
Alignment:
Q  98 tcaaatagcatataaatacatttttggaata-aaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||   ||| ||||| ||| |||||||||||||| || ||| |||| | ||||||| ||||||| |||||||||||||    
T  9686368 tcaagtagcacataaatacattttttttatagaaaagcaaagaagaaacttaacaagagaaaaaatattttattttattaaagttttcattgaatttcta 9686467  T
Q  197 tgagtat 203  Q
    |||||||    
T  9686468 tgagtat 9686474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 7169846 - 7169738
Alignment:
Q  98 tcaaatagcatataaatacatttttggaat--aaaaagaaaataagaaacttaacaaaag-gaaatatatgtcattttataaaagtttccattgaatttc 194  Q
    |||| ||||| ||||||||||||||   ||  |||||| ||| |||||||||||| | ||  |||||||||||||||||| ||||||| |||||||||||    
T  7169846 tcaagtagcacataaatacattttttttatagaaaaagcaaagaagaaacttaacgagagaaaaatatatgtcattttattaaagttttcattgaatttc 7169747  T
Q  195 tatgagtat 203  Q
    |||||||||    
T  7169746 tatgagtat 7169738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 28633275 - 28633352
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccat 186  Q
    ||||||||||||||| |||| |||| ||| |||||||||||||| || ||| |||  |||||||||||||||||||||    
T  28633275 ataaatacatttttgaaatagaaagcaaaaaagaaacttaacaagagaaaaaatacttcattttataaaagtttccat 28633352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 29048867 - 29048971
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| || |||||| ||| |||||||||||||  | |||| | |||||||||||| ||||||| |||||| ||| |||    
T  29048867 tcaagtagcacataaatacatttttgaaacaaaaagcaaagaagaaacttaacatga-gaaaaaaatgtcattttattaaagttttcattgagtttttat 29048965  T
Q  198 gagtat 203  Q
    ||||||    
T  29048966 gagtat 29048971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 22414129 - 22414254
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||| |||||||  | | |||| ||| |||||||||||||| || ||| | ||||||||||||| |||||||||||||||||| |     
T  22414129 tcaagtagcacataaatagatttttgatagataaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttattaaagtttccattgaatttatg 22414228  T
Q  197 tgagtatattagtctagatgacatatat 224  Q
    ||||  |||| |||||||||| ||||||    
T  22414229 tgag--tattggtctagatgatatatat 22414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 13531967 - 13531929
Alignment:
Q  165 gtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13531967 gtcattttataaaagtttccattgaatttctatgagtat 13531929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 24644706 - 24644612
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| || | |||| ||| |||||||| ||| | || ||| |||||||||||||| ||||||| ||||||  ||||||||||||    
T  24644706 ataaatacatttttgaaagataaagcaaagaagaaactcaacgagagtaaaaatatgtcattttattaaagttttcattgaggttctatgagtat 24644612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 6400158 - 6400271
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaacttaacaa---aaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatatt 206  Q
    ||||||||||||||  | |||||| ||| ||||||||||||||   ||| || |||  |||||||||| |||||||||||||||||| ||||||  ||||    
T  6400158 taaatacatttttgatagaaaaagcaaagaagaaacttaacaagtgaagcaagtat--gtcattttattaaagtttccattgaatttatatgag--tatt 6400253  T
Q  207 agtctagatgacatatat 224  Q
     |||||||||| ||||||    
T  6400254 ggtctagatgatatatat 6400271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 13092330 - 13092422
Alignment:
Q  111 aaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||| || |||||| ||| | |||||||||||| || |||  ||||||||||||| ||  ||| |||||| |||||||||||||    
T  13092330 aaatacatttttgaaagaaaaagtaaagaggaaacttaacaagagaaaaattatgtcattttattaacattttcattgagtttctatgagtat 13092422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 17306718 - 17306799
Alignment:
Q  138 taagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 224  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||| |||| | ||||||||||  ||||||| |||| |||||||||    
T  17306718 taagaaacttaacaaaagaaaatat--gtcattt-ataaaagttttcattaagtttctatgag--tattagtgtagaagacatatat 17306799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 30752902 - 30752995
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| |||| |||  ||| ||||||||||| || || |||  ||||| ||| ||||||||||||||||   |||||||||||||    
T  30752902 ataaatacatttttgaaatagaaaacaaagaagaaacttaataagagaaaag-tatgttattgtataaaagtttccattatgtttctatgagtat 30752995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 26197 - 26291
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  26197 ataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatgagtat 26291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 14850 - 14949
Alignment:
Q  104 agcatataaatacatttttggaataaaaagaaaataagaaa-cttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||| ||||||||||||||  |||| |||||||| |||||| |||||||| || ||| |||| || |||||||||||||||| ||| |||| ||||||||    
T  14850 agcacataaatacattttttaaatagaaagaaaagaagaaaacttaacaagagaaaaaatatatctttttataaaagtttccgttg-atttgtatgagta 14948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 48338675 - 48338769
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  48338675 ataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatgagtat 48338769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 18536422 - 18536317
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| |||||||||  || |||||||||||||| || ||| ||||||||||||||||||||||||||| | ||| |||    
T  18536422 tcaagtagcacataaatacatttttgaaataaaaagcgaagaagaaacttaacaagagaaaaaatatgtcattttataaaagtttccatttagtttatat 18536323  T
Q  198 gagtat 203  Q
    ||||||    
T  18536322 gagtat 18536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 46471758 - 46471852
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| ||||||||| ||| || ||||||||||| || ||| |||||||||||||||||| |||||||||| ||| ||| |||||    
T  46471758 ataaatacatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatgtcattttataaaaatttccattgagtttttataagtat 46471852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 36106227 - 36106127
Alignment:
Q  104 agcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaag-gaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||| ||||||||||||||| ||||||||| ||| |||||||||||||||||  ||| ||||| | ||||||||||||||| |||||  |||||||||||    
T  36106227 agcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaaaagaaaaaaatatgccgttttataaaagtttcaattgagattctatgagta 36106128  T
Q  203 t 203  Q
    |    
T  36106127 t 36106127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 41325727 - 41325807
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||||||||||||| || |||||  ||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  41325727 ataaatacatttttgaaagaaaaaacaaagaagaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattga 41325807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 20986731 - 20986825
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||| ||||||| || |||||| ||| |||||||||||||| || ||| |||||||||||||| |||||||| ||||| ||| |||||||||    
T  20986731 ataaataaatttttgaaagaaaaaggaaagaagaaacttaacaagagaaaaaatatgtcattttattaaagtttctattgagtttatatgagtat 20986825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 32223074 - 32222952
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| | ||||||| ||||| ||||||||| ||| |||||||||||||| |  ||| |||||||||||||||||||||| |||||| ||| |||    
T  32223074 tcaagtagcacacaaatacacttttgaaataaaaagtaaagaagaaacttaacaaga--aaaaatatgtcattttataaaagtttacattgagtttatat 32222977  T
Q  198 gagtatattagtctagatgacatatat 224  Q
    ||  ||||| || ||| ||||||||||    
T  32222976 ga--atattggtataggtgacatatat 32222952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 45464479 - 45464581
Alignment:
Q  98 tcaaatagcatataaatacatttttgga-ataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    ||||||||||||||||||||||||| || | |||||| | | ||||||||||||||   |||| | |||||||||||| ||||||| |||||||||||||    
T  45464479 tcaaatagcatataaatacattttttgatagaaaaagcacagaagaaacttaacaa---gaaaaa-atgtcattttattaaagttttcattgaatttcta 45464574  T
Q  197 tgagtat 203  Q
    |||||||    
T  45464575 tgagtat 45464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 41312413 - 41312330
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||| ||||||||| ||| |||||| ||||||| || ||| |||||||||| |||||||||||| ||||| ||||||||||||    
T  41312413 ttttgaaataaaaagcaaagaagaaatttaacaatagaaaaaatatgtcattctataaaagtttctattgagtttctatgagta 41312330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 29233081 - 29233175
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||  | || |||||  ||| ||||||||||||||| | ||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  29233081 ataaatacatttaggaaagaaaaatcaaagaagaaacttaacaaaggaaaaaatatgtcattttattaaagttttcattgagtttctatgagtat 29233175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 49641164 - 49641275
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaagg-aaatatatgtcattttataaaagtttccattgaatttctatgagtatatta 207  Q
    ||||||||||||||| | | ||||| ||| |||||||||||||| ||  |||||  ||||||||||||||| ||||||| || ||||||||||  |||||    
T  49641164 ataaatacatttttgaagtgaaaagcaaaaaagaaacttaacaagagataaatacgtgtcattttataaaaatttccatggagtttctatgag--tatta 49641261  T
Q  208 gtctagatgacata 221  Q
    |||||| |||||||    
T  49641262 gtctaggtgacata 49641275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 3666820 - 3666719
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattag 208  Q
    ||||||||||||  | ||||||||| | | || ||||||||||| || ||| |||| ||||||||||||||||| |||||| |||||||||  |||||||    
T  3666820 ataaatacatttcagcaataaaaagcatagaaaaaacttaacaagagaaaaaatatatcattttataaaagttttcattgagtttctatga--atattag 3666723  T
Q  209 tcta 212  Q
    ||||    
T  3666722 tcta 3666719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 18399355 - 18399443
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||||||||||||||  |||||||  ||| ||||||||||||||    ||| ||||||||||| ||||||||||||||||| |||||||    
T  18399355 ataaatacatttttgagataaaaatcaaagaagaaacttaacaagtcaaaaaatatgtcatttcataaaagtttccattgagtttctat 18399443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 8484994 - 8485104
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatata-----tgtcattttataaaagtttccattgaatt 192  Q
    |||| ||||||||||||||||| |||  | |||||| ||| |||||||||||||| || ||| | |     ||||||||||| ||||||| |||||||||    
T  8484994 tcaagtagcatataaatacattattgatagaaaaagcaaagaagaaacttaacaagagaaaaaaaaaacaatgtcattttattaaagtttacattgaatt 8485093  T
Q  193 tctatgagtat 203  Q
    |||||||||||    
T  8485094 tctatgagtat 8485104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 35233046 - 35232953
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| ||||||| ||||||||| |||||| ||| ||||||| |  ||| | ||||||||||||| |||||| |||||| |||||||| ||||    
T  35233046 taaataaatttttgaaataaaaagtaaataataaatttaacaagaaaaaaaaaatgtcattttatagaagttttcattgagtttctatgtgtat 35232953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 53934979 - 53935059
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatat-atgtcattttataaaagtttccattga 189  Q
    ||||||||||||||| |||||||||||||||||||| || |||| || ||| || ||||||||| |||||||||| ||||||    
T  53934979 ataaatacatttttg-aataaaaagaaaataagaaatttgacaagagaaaaaataatgtcatttcataaaagttttcattga 53935059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 6102213 - 6102312
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||| |||||||| |||||   ||||||||  || |||||||||||||  || ||| | |||||||||||||||||||| |||||||||| ||||||||    
T  6102213 tagcaaataaatacttttttaatataaaaagcgaagaagaaacttaacacgagaaaaaa-atgtcattttataaaagttttcattgaatttttatgagta 6102311  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 35014600 - 35014675
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    ||||| ||||||||||||||  ||||||||  ||  |||||||||||||| || |||||||||||| |||||||||    
T  35014600 tagcacataaatacattttttaaataaaaaacaatgaagaaacttaacaagagaaaatatatgtcactttataaaa 35014675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 14867114 - 14867192
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||| |||||||||||||| || ||  ||||||||||||||| ||||||  ||| | |||||||||||||    
T  14867114 aataaaaagtaaagaagaaacttaacaagagaaataatatgtcattttatagaagttttgattaagtttctatgagtat 14867192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 23625661 - 23625563
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||   | |||||| |||  |||||||||||||||| |||   || ||||||||| ||||||| |||||||||||||    
T  23625661 tcaagtagcagataaatacattttttatagaaaaaggaaagtagaaacttaacaaaagaaaaataatatcattttattaaagttttcattgaatttcta 23625563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 29701013 - 29701059
Alignment:
Q  157 aaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||    
T  29701013 aaatatatgtcattttataaaagttttcattgagcttctatgagtat 29701059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 40494742 - 40494816
Alignment:
Q  107 atataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtt 181  Q
    |||||||||| |||||| ||||||||| ||| ||| |||||||||| |  |||| | ||||||||||||||||||    
T  40494742 atataaatacgtttttgaaataaaaagtaaacaagtaacttaacaagataaaatttttgtcattttataaaagtt 40494816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 4689013 - 4689106
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||  || ||||  ||| |||||| ||||||| || ||| |||| |||||||||| |||||| |||||| ||| |||||||||    
T  4689013 taaatacatttttgagatgaaaaacaaagaagaaaattaacaagagaaaaaatatatcattttatagaagttttcattgagtttttatgagtat 4689106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 21069388 - 21069468
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaag--gaaatatatgtcattttataaaagtttccatt 187  Q
    ||||||||||||||| || |||||| ||| |||||||||||||| ||   ||| |||||||||||||| ||||||| ||||    
T  21069388 ataaatacatttttgaaacaaaaagcaaagaagaaacttaacaagagaaaaaacatatgtcattttattaaagttttcatt 21069468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 41260448 - 41260509
Alignment:
Q  117 atttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    ||||||| ||||||||| ||| ||||||||| |||| || ||| ||||||||||||||||||    
T  41260448 atttttgaaataaaaagcaaagaagaaactttacaagagaaaaaatatgtcattttataaaa 41260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 45983714 - 45983771
Alignment:
Q  147 taacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtata 204  Q
    ||||||||| |||  ||||| ||||||||||||||||||||||||||  |||||||||    
T  45983714 taacaaaagaaaaagtatgtaattttataaaagtttccattgaattttcatgagtata 45983771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 5122143 - 5122063
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    |||| ||||| |||||||| |||||  ||||||||| ||| ||  |||||||||| || ||| ||||||||||||||||||    
T  5122143 tcaagtagcacataaatacgttttttaaataaaaagcaaagaaagaacttaacaagagaaaaaatatgtcattttataaaa 5122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 4054551 - 4054476
Alignment:
Q  106 catataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtt 181  Q
    |||||||||||||||||  ||||||||||||  || ||||||||||| || |||  ||||| ||| ||||||||||    
T  4054551 catataaatacatttttaaaataaaaagaaaggaaaaaacttaacaagagaaaaattatgttattctataaaagtt 4054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 15724236 - 15724279
Alignment:
Q  162 tatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||    
T  15724236 tatgtaattttataaaagtttccattgagtttctatgattatat 15724279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 27743532 - 27743598
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaag-gaaatatatgtcattttat 174  Q
    ||||||||||||||| || |||||| ||| |||||||||||||| ||  ||| ||||||||||||||    
T  27743532 ataaatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttat 27743598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 48602272 - 48602166
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaactt-aacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||| | ||||||| ||||||||| ||| ||||||||| ||||  || || ||||| ||||||||||||| |||| ||||| ||| |     
T  48602272 tcaagtagcacataaacatatttttgaaataaaaagtaaagaagaaacttaaacatgagaaagtatatttcattttataaaattttctattgagtttatt 48602173  T
Q  197 tgagtat 203  Q
    |||||||    
T  48602172 tgagtat 48602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 18319304 - 18319226
Alignment:
Q  142 aaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatat 222  Q
    ||||||||||| |  ||| ||||||||||| |||||| |||||||||| |||||||   | |||| |||||||||||||||    
T  18319304 aaacttaacaagaccaaaaatatgtcatttcataaaaatttccattgagtttctat--ttgtattggtctagatgacatat 18319226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 18396685 - 18396763
Alignment:
Q  142 aaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatat 222  Q
    ||||||||||| |  ||| ||||||||||| |||||| |||||||||| |||||||   | |||| |||||||||||||||    
T  18396685 aaacttaacaagaccaaaaatatgtcatttcataaaaatttccattgagtttctat--ttgtattggtctagatgacatat 18396763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 25686162 - 25686129
Alignment:
Q  170 tttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||||||||||| |||||||||    
T  25686162 tttataaaagtttccattgaatttttatgagtat 25686129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 7783939 - 7783865
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaa--tatatgtcattttataaaagttt 182  Q
    ||||||||||||||| ||||||||| ||| || ||||||||||| || |||   | ||||||||||||||||||||    
T  7783939 ataaatacatttttgaaataaaaagtaaagaa-aaacttaacaagagaaaaagaaaatgtcattttataaaagttt 7783865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 23119988 - 23119944
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    |||||| ||||| |||||||||||||||| ||| |||||||||||    
T  23119988 atatgtaattttgtaaaagtttccattgagtttttatgagtatat 23119944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 45226693 - 45226741
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaact 146  Q
    ||||||||||  |||||||||||||| ||||||||| ||| ||||||||    
T  45226693 tcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaact 45226741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 48685135 - 48685188
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatg 216  Q
    |||||||||||||||||||||  | |||| ||||||||||  ||||||||||||||    
T  48685135 atatgtcattttataaaagttatcgttgagtttctatgag--tattagtctagatg 48685188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 6248394 - 6248499
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||||||||||||  | |||||| ||| |||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  6248394 tcaattagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaagaggaaaaatatgtcattttattaaagtttccattgaatttctat 6248493  T
Q  198 gagtat 203  Q
    ||||||    
T  6248494 gagtat 6248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 36203211 - 36203106
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| ||||||||| ||| |||||||||||||| || | | ||||||||||||||||||||||||||||| |||||||    
T  36203211 tcaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaagagaacaaatatgtcattttataaaagtttccattgagtttctat 36203112  T
Q  198 gagtat 203  Q
     |||||    
T  36203111 tagtat 36203106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 10847289 - 10847166
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    ||||||||||  |||||||||||||| ||||||||| ||| ||||||||||||||||| |||||  | |||||||||||||||| ||||||| || ||||    
T  10847289 tcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaatacttatcattttataaaagttcccattgagttgctat 10847190  T
Q  198 gagtatattagtctagatgacatata 223  Q
     ||  |||| ||||| ||||||||||    
T  10847189 tag--tatttgtctatatgacatata 10847166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 35980036 - 35979932
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||  ||||| ||||||||| ||| |||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||||    
T  35980036 tcaagtagcacataaataccattttgaaataaaaagcaaagaagaaacttaacaagagaaaaaatatgtca-tttataaaagtttccattgagtttctat 35979938  T
Q  198 gagtat 203  Q
    ||||||    
T  35979937 gagtat 35979932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 8269007 - 8269090
Alignment:
Q  139 aagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 224  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |  ||||| |||||||||| ||||||    
T  8269007 aagaaacttaacaaaagaaaatatatgtcattttataaaagtttccattgagtttatataa--atattggtctagatgatatatat 8269090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 17989365 - 17989470
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||| |  ||| | | ||||||||||||||||||||||||| |||||||    
T  17989365 tcaagtagcacataaatatatttttgaaataaaaagaaaagaagaaacttagcaagaaaaaaaaaaagtcattttataaaagtttccattgagtttctat 17989464  T
Q  198 gagtat 203  Q
    | ||||    
T  17989465 gtgtat 17989470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 52380496 - 52380391
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||||||||| |||||||||||||||  | |||||  ||| |||||||||||||| || ||| |||||||||||||| |||||||  |||||||||||||    
T  52380496 tcaaatagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaatatgtcattttattaaagtttttattgaatttctat 52380397  T
Q  198 gagtat 203  Q
     |||||    
T  52380396 aagtat 52380391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 9330746 - 9330824
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||| || |||||||||||||| ||| |||| ||||||||||||||||| |||||| |||||||||||||    
T  9330746 aataaaaagcaaagaacaaacttaacaaaagaaaaaatatatcattttataaaagttttcattgagtttctatgagtat 9330824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 40094913 - 40094823
Alignment:
Q  113 atacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||| || |||||| ||| |||||||||||||| || ||  |||||||||||||| ||||||| |||||| |||||||||||||    
T  40094913 atacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaataatatgtcattttattaaagttttcattgagtttctatgagtat 40094823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 9249841 - 9249768
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagttt 182  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  9249841 ataaatacatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatgtcattttataaaagttt 9249768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 35992359 - 35992255
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||  ||||| ||||||||| ||| |||||||||||||| || ||| |||||||| |||||||||||||||||| | ||||| |    
T  35992359 tcaagtagcacataaataccattttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtca-tttataaaagtttccattaagtttcttt 35992261  T
Q  198 gagtat 203  Q
    ||||||    
T  35992260 gagtat 35992255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 25559770 - 25559682
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||  || ||||||||||||||  || || ||||||| |||||||    
T  25559770 ataaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagataaaatatgtcattttattcaaattcccattgagtttctat 25559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 23474838 - 23474759
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa-gtttccattgaatttctatgagtat 203  Q
    ||||||||  ||| |||||| ||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  23474838 aataaaaatcaaagaagaaaattaacaagagaaaaaatatgtcattttataaaaagtttccattgaatttctatgagtat 23474759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 26344796 - 26344705
Alignment:
Q  112 aatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| || |||||| ||| |||||||||||||| || ||| |||||||||||||| ||||||  |||| | |||||||||||||    
T  26344796 aatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaaaatatgtcattttattaaagttctcatttagtttctatgagtat 26344705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 12973899 - 12973977
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccatt 187  Q
    |||||| ||||||||  | |||||  ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  12973899 ataaatgcatttttgacagaaaaaacaaagaagaaacttaacaaaaggaaaaatatgtcattttattaaagtttccatt 12973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 27507263 - 27507169
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||  | |||||| ||| |||| ||||||||| || ||| | |||||||||||  |||||||| |||||||||||||||||||    
T  27507263 ataaatacatttttgatagaaaaagcaaagaagagacttaacaagagaaaaaaaatgtcattttactaaagtttcaattgaatttctatgagtat 27507169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 35375487 - 35375593
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| |||||||| |||||| ||||| | |||| || |||||||||||||   || |||||| | |||||||||||||||||||||||||||| ||||||    
T  35375487 tcaagtagcatatgaatacacttttgaattaaagagcaaataagaaactttttaataggaaaaaatatgtcattttataaaagtttccattgagtttcta 35375586  T
Q  197 tgagtat 203  Q
    | |||||    
T  35375587 taagtat 35375593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 19051442 - 19051521
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaa 177  Q
    |||| ||||| | ||||||||||||  ||||||||||||| |||||| | ||||| || |||||||||||||||||||||    
T  19051442 tcaagtagcacagaaatacatttttaaaataaaaagaaaagaagaaattgaacaagagaaaatatatgtcattttataaa 19051521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 21685315 - 21685209
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| |||||||| |||||| ||||| ||||||||| ||  |||||||||| ||| || ||| | ||||||||||||||||||| || ||||| ||||||    
T  21685315 tcaagtagcatatgaatacacttttgaaataaaaagcaaggaagaaacttatcaagagaaaaaaatatgtcattttataaaagtgtctattgagtttcta 21685216  T
Q  197 tgagtat 203  Q
    | |||||    
T  21685215 taagtat 21685209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 17652066 - 17652166
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| | ||||||||||||| ||||||||  ||| |||||||||||| |||| ||| |||||||| | ||||||| |||||||| | |||||||    
T  17652066 tcaagtagcacaaaaatacatttttgaaataaaaaacaaagaagaaacttaacgaaagaaaaaatatgtca-tgtataaaaatttccattaagtttctat 17652164  T
Q  198 ga 199  Q
    ||    
T  17652165 ga 17652166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 18310319 - 18310392
Alignment:
Q  130 aaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| ||| |||||||||| ||| || ||| | |||||||||||||||||||| |||||||||||||| |||||    
T  18310319 aaagcaaagaagaaacttatcaagagaaaaaacatgtcattttataaaagttttcattgaatttctataagtat 18310392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 36782123 - 36782027
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaagg--aaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||  || |||||| ||| |||||||||||||| ||   ||| |||||| ||||||| |||||||||||||| ||||||| |||||    
T  36782123 ataaatacattttttaaagaaaaaggaaaaaagaaacttaacaagagagaaaaaatatgtaattttattaaagtttccattgagtttctataagtat 36782027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 50471420 - 50471524
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||||| |||||| || |||||| ||| ||| |||||||| | || ||| || ||||||||||| |||||| ||||||| |||||||    
T  50471420 tcaagtagcacataaatacttttttgaaa-aaaaagcaaagaaggaacttaactagagaaaaaatgtgtcattttattaaagttaccattgagtttctat 50471518  T
Q  198 gagtat 203  Q
    ||||||    
T  50471519 gagtat 50471524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 3937095 - 3937186
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||  | |||||| ||| ||||||||||||||   |||| | ||||||||| || |||||||  |||||||||||||||||||    
T  3937095 ataaatacatttttgatagaaaaagtaaagaagaaacttaacaa---gaaaaaaatgtcatttaattaaagtttttattgaatttctatgagtat 3937186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 6693852 - 6693760
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||||| || |||||  ||| |||||||||||||| || ||| ||  |||||||||| ||||||| |||||| |||||||||||||    
T  6693852 ataaatacaattttgaaagaaaaaacaaagaagaaacttaacaagagaaaaaat--gtcattttattaaagttttcattgagtttctatgagtat 6693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 25507198 - 25507298
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||| | ||||||||  ||| || ||||||||||| |  ||| | |||||||||||||||||||| |||||| |||||||    
T  25507198 tcaagtagcacataaatatattttagaaataaaaaacaaagaaaaaacttaacaacaacaaaaa-atgtcattttataaaagttttcattgagtttctat 25507296  T
Q  198 ga 199  Q
    ||    
T  25507297 ga 25507298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 44056054 - 44056159
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| |||| |||| ||| ||  |||||||||| || ||| |||| |||||||||||||   | |||||| ||| |||    
T  44056054 tcaagtagcacataaatacatttttgaaatataaagcaaagaatgaacttaacaagagaaaaaatatatcattttataaaaaaattcattgagtttatat 44056153  T
Q  198 gagtat 203  Q
    ||||||    
T  44056154 gagtat 44056159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 16063196 - 16063236
Alignment:
Q  163 atgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  16063196 atgtcattttattaaagtttcgattgaatttctatgagtat 16063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 39158053 - 39157989
Alignment:
Q  117 atttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtt 181  Q
    ||||||| ||||||||  |||||||||| ||||||||   ||| |||||||||||||||||||||    
T  39158053 atttttgaaataaaaatcaaataagaaatttaacaaagcaaaaaatatgtcattttataaaagtt 39157989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 18834279 - 18834199
Alignment:
Q  142 aaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatatat 224  Q
    ||||||| ||| || ||| |||||||||||||||||||||| |||||| ||| ||| ||  |||| |||||| ||||||||||    
T  18834279 aaacttatcaagagaaaaaatatgtcattttataaaagttttcattgagtttttattag--tattggtctaggtgacatatat 18834199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 13056291 - 13056176
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagt 201  Q
    ||||| |||||||||||||   |||||| || ||  |||||||||||||| || ||| | ||||||||| ||||||||||  || ||| ||||||||||     
T  13056291 tagcacataaatacatttta--aataaagagcaagcaagaaacttaacaagagaaaaaaatatgtcattctataaaagttatcactgagtttctatgag- 13056195  T
Q  202 atattagtctagatgacata 221  Q
     ||||||||||| |||||||    
T  13056194 -tattagtctaggtgacata 13056176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 39166951 - 39166882
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    |||||| |||||||  ||||||||  ||| |||||||||||||| || ||| |||||||||| |||||||    
T  39166951 ataaatgcatttttaaaataaaaaccaaagaagaaacttaacaagagaaaaaatatgtcattctataaaa 39166882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 50951736 - 50951663
Alignment:
Q  130 aaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| ||| ||||||||| ||||||| ||| | |  |||||||||||||| ||| ||||| |||||||||||||    
T  50951736 aaagcaaagaagaaactttacaaaagtaaaaaaaaatcattttataaaagcttcaattgagtttctatgagtat 50951663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 13194228 - 13194330
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaagg--aaatatatgtcattttataaaagtttccattgaatttctatgag 200  Q
    ||||| ||||||| ||||||| ||||||||| ||| |||||||||||||| ||   ||| ||||||||||||||||||||||||||||| ||||||||||    
T  13194228 tagcacataaatatatttttgaaataaaaagcaaagaagaaacttaacaagagagaaaaaatatgtcattttataaaagtttccattgattttctatgag 13194327  T
Q  201 tat 203  Q
    |||    
T  13194328 tat 13194330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 15320352 - 15320247
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||||||||||||| ||||| ||||||| | ||| |||||||||| ||| || ||| ||||| |||||||||||||||| |||||| |||||||    
T  15320352 tcaagtagcatataaatacacttttgaaataaaatgcaaagaagaaacttatcaagagaaaaaatatgccattttataaaagttttcattgagtttctat 15320253  T
Q  198 gagtat 203  Q
     |||||    
T  15320252 aagtat 15320247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 22014286 - 22014385
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||| ||||||| |||||||   ||||||| ||| |||||||||||||| || ||| |||||||||||||||||||||||||||||  |||||||||||    
T  22014286 tagcacataaatatatttttgacttaaaaagcaaagaagaaacttaacaagagaaaa-atatgtcattttataaaagtttccattgagattctatgagta 22014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 41166475 - 41166596
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||||||||||| |||||||  |||||||| ||| |||||||||||||| || ||| | ||||||||||||||||   | |||||| |||||||    
T  41166475 tcaagtagcatataaatatatttttgacataaaaagcaaagaagaaacttaacaagagaaaaaacatgtcattttataaaaaaattcattgagtttctat 41166574  T
Q  198 gagtatattagtctagatgacata 221  Q
    ||  ||||| |||||| |||||||    
T  41166575 ga--atattggtctaggtgacata 41166596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 31719841 - 31719737
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||||||||||| ||||||  ||||||||| | | || ||||||||||| || ||| ||||||||||||| ||||||||||| ||| |||||||    
T  31719841 tcaagtagcatataaatatatttttaaaataaaaagcagagaa-aaacttaacaagagaaaaaatatgtcattttacaaaagtttccactgagtttctat 31719743  T
Q  198 gagtat 203  Q
     |||||    
T  31719742 aagtat 31719737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 5862420 - 5862318
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaag-gaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||| || |||||| ||| ||||||||| |||| ||  ||| |||||||||||||| ||||||| |||||| || |||    
T  5862420 tcaagtagcacataaatacatttttgaaagaaaaagcaaagaagaaactttacaagagaaaaaaatatgtcattttattaaagttttcattgagttccta 5862321  T
Q  197 tga 199  Q
    |||    
T  5862320 tga 5862318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 10242502 - 10242408
Alignment:
Q  109 ataaatacatttttggaat-aaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||||||||||||| ||| ||||| |||| |||||| ||| | | || ||| |||| |||||||||||||||||| ||||| ||||||||||||    
T  10242502 ataaatacatttttgaaattaaaaaaaaaaaaagaaatttatccagagaaaaaatatatcattttataaaagtttcaattgagtttctatgagta 10242408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 27301238 - 27301149
Alignment:
Q  114 tacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||| ||||||||| ||| ||||| |||||||| ||  || |||||| ||||| ||| ||||||||| || |||||||||||||    
T  27301238 tacatttttgaaataaaaagcaaagaagaagcttaacaagagagaaaatatgtaattttttaatagtttccatggagtttctatgagtat 27301149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 36964322 - 36964387
Alignment:
Q  113 atacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    ||||||| ||| ||||||||||||| ||| |||||||||| || ||| ||||||||||||||||||    
T  36964322 atacattgttgaaataaaaagaaaagaagcaacttaacaagagaaaaaatatgtcattttataaaa 36964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 17763083 - 17763151
Alignment:
Q  114 tacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagttt 182  Q
    |||||||||| ||||||||| |||  ||||||||||||| || ||| |||||||||||| |||||||||    
T  17763083 tacatttttgaaataaaaagtaaaagagaaacttaacaagagaaaaaatatgtcattttgtaaaagttt 17763151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 20496714 - 20496813
Alignment:
Q  104 agcatataaatacatttttgg-aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||||||||||||||||||   ||||||||  ||| |||||| ||||||| || ||| | |||||||||||||| ||||||| |||| ||||||||||||    
T  20496714 agcatataaatacattttttttaataaaaaataaagaagaaatttaacaagagaaaa-acatgtcattttataatagtttccgttgagtttctatgagta 20496812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 36500377 - 36500270
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatattag 208  Q
    ||||||||||||| | ||||||||| ||| |||||||||| ||| || | | ||||| |||||||||||||||| |||||| ||||||| ||  ||||||    
T  36500377 ataaatacatttt-gaaataaaaagcaaagaagaaactta-caagagaacaaatatgccattttataaaagttttcattgagtttctattag--tattag 36500282  T
Q  209 tctagatgacat 220  Q
    ||||| ||||||    
T  36500281 tctaggtgacat 36500270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 44085859 - 44085915
Alignment:
Q  147 taacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||| | ||||||    
T  44085859 taacaaaagaaaaaatatgtcattttataaaagtttcaattgaatttccacgagtat 44085915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 12041340 - 12041249
Alignment:
Q  112 aatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||||||||||| ||||||||| ||| ||||||||| | || || ||| | | |||| |||||||||||||| |||||| ||||||||||||    
T  12041340 aatacatttttgaaataaaaagtaaagaagaaactttataatagaaaaaaatttgtcgttttataaaagttttcattgagtttctatgagta 12041249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12841694 - 12841756
Alignment:
Q  129 aaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaat 191  Q
    ||||| ||| ||||| || ||||| || |||||||||||||||||||| ||||||||||||||    
T  12841694 aaaagcaaagaagaatctgaacaagagaaaatatatgtcattttataacagtttccattgaat 12841756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 1331314 - 1331417
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||||| ||||||||| ||| || |||||||||||    |||  ||||||| ||||||||||||||||||| | ||||||    
T  1331314 tcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagcaaaaaagtatgtca-tttataaaagtttccattg-agttctat 1331411  T
Q  198 gagtat 203  Q
    ||||||    
T  1331412 gagtat 1331417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 11051170 - 11051084
Alignment:
Q  98 tcaaatagcatataaatacat-ttttggaataaaaaga-aaataagaaacttaacaaaaggaaatatatgtcattttataaaagttt 182  Q
    |||| |||||||||||||||| ||||| |||||||| | ||| |||||||||||| | || ||| | ||||||||| ||||||||||    
T  11051170 tcaagtagcatataaatacattttttgaaataaaaaaacaaagaagaaacttaacgagagaaaaaacatgtcatttcataaaagttt 11051084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 27898717 - 27898759
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| ||||||||||||||| |||||| |||||||||||||    
T  27898717 atatgtaattttataaaagttttcattgagtttctatgagtat 27898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 41983964 - 41983871
Alignment:
Q  108 tataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||||||||||||||| ||||||||| ||| |||| | |||||||||| |||   |||||||  ||| ||||||| |||| || |||||||||||    
T  41983964 tataaatacatttttgaaataaaaagtaaagaagagatttaacaaaagaaaaatcatgtcatcctat-aaagttttcattaaacttctatgagta 41983871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 34572703 - 34572627
Alignment:
Q  104 agcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtt 181  Q
    |||| |||| |||||||||| |||||||| |||  |||||||||||||| || ||| |||||||||| |||| |||||    
T  34572703 agcacataagtacatttttgaaataaaaacaaag-aagaaacttaacaagagaaaaaatatgtcattctatacaagtt 34572627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 2796585 - 2796462
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| ||||||||| ||| |||||| ||||||| || ||| ||| |||||||||| ||||||||| |||| ||| |||    
T  2796585 tcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacgtcattttatcaaagtttccgttgagtttttat 2796486  T
Q  198 gagtatattagtctagatgacatata 223  Q
    |||  |||||||||||||||| ||||    
T  2796485 gag--tattagtctagatgacttata 2796462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 42920789 - 42920696
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||||||||||||||  |||||||| ||| |||||||||||||| || ||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  42920789 ataaatacatttttgatataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttataaaagttttaattgagtttctatgagta 42920696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 12378839 - 12378751
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaag-gaaatatatgtcattttataaaagtttccattgaa 190  Q
    ||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||  ||| | ||||||||||||||||||||||||||||    
T  12378839 tagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaaaaaaatgtcattttataaaagtttccattgaa 12378751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 6633624 - 6633729
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| || |||||||||||| ||| ||||| ||| || ||||||| ||| || ||| |||||||||||||||||||||| |||||| |||||||    
T  6633624 tcaagtagcacatcaatacatttttgaaatcaaaagcaaagaaaaaacttatcaacagaaaaaatatgtcattttataaaagttttcattgagtttctat 6633723  T
Q  198 gagtat 203  Q
    ||||||    
T  6633724 gagtat 6633729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 2802746 - 2802623
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| ||||||||| ||| |||||| ||||||| || ||| ||| |||||||||| ||||||| | |||| ||| |||    
T  2802746 tcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacgtcattttatcaaagttttcgttgagtttttat 2802647  T
Q  198 gagtatattagtctagatgacatata 223  Q
    |||  |||| ||||||||||| ||||    
T  2802646 gag--tattggtctagatgacttata 2802623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 41805586 - 41805481
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||||||  ||||| ||||| ||||||||  ||| |||||||||| ||| || ||| || |||||||||||||||||||||||||| |||||||    
T  41805586 tcaagtagcatatgtatacacttttgaaataaaaaataaagaagaaacttatcaagagaaaaaatgtgtcattttataaaagtttccattgagtttctat 41805487  T
Q  198 gagtat 203  Q
     |||||    
T  41805486 aagtat 41805481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 40692777 - 40692865
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccat 186  Q
    |||| |||||||| |||||||||||| ||||||||| ||| |||||||||| |||  | ||| || |||||||||||||||||||||||    
T  40692777 tcaagtagcatatgaatacatttttgaaataaaaagtaaagaagaaacttaccaagcgaaaaaatgtgtcattttataaaagtttccat 40692865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 38176242 - 38176151
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||||||||  |||||||||||||  ||| ||||||||| |||||| |||||||  | ||| ||||||||||||||||||||||| |||||    
T  38176242 tcaaatagcaattaaatacattttttaaatgaaaagaaaagaagaaatttaacaactgaaaaaatatgtcattttataaaagtttcgattga 38176151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 38203466 - 38203375
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||||||||  |||||||||||||  ||| ||||||||| |||||| |||||||  | ||| ||||||||||||||||||||||| |||||    
T  38203466 tcaaatagcaattaaatacattttttaaatgaaaagaaaagaagaaatttaacaactgaaaaaatatgtcattttataaaagtttcgattga 38203375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 18845838 - 18845927
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattg 188  Q
    |||||| ||||||||||||||||||  ||||||| | ||| |||||| |||||||||| |||||||||||| ||||| ||||||| |||||    
T  18845838 tcaaattgcatataaatacatttttaaaataaaaggcaaagaagaaatttaacaaaagaaaatatatgtca-tttatgaaagttttcattg 18845927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 22553705 - 22553783
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||| |||||||||||||| || ||| ||||||||||||||| ||||||  ||||| |||||||||||||    
T  22553705 aataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttatagaagttttaattgagtttctatgagtat 22553783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 41455205 - 41455299
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| |||||||||| || |||||| | | || ||| ||||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||    
T  41455205 ataagtacatttttgaaagaaaaagtacagaaaaaagttaacaagagaaaaaatatgtcattttattaaagtttccattgagtttctatgagtat 41455299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 18432410 - 18432515
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||| || ||||||| ||||||||| ||| || |||||||||    | ||| |||||||||||||||||||||| |||||| |||||||    
T  18432410 tcaagtagcacataactatatttttgaaataaaaagcaaagaaaaaacttaacgtgggaaaaaatatgtcattttataaaagttttcattgattttctat 18432509  T
Q  198 gagtat 203  Q
    ||||||    
T  18432510 gagtat 18432515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 2589361 - 2589420
Alignment:
Q  143 aacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||    
T  2589361 aacttaacaaaagaaaatatatgtcattt-ataaaagtttccatttagtttctatgagtat 2589420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 2423142 - 2423234
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| ||  ||||| |||||| ||| ||||||| || ||||||||||||||| ||||||||||| ||||| ||| |||||||||    
T  2423142 ataaatacatttttgaaaagaaaagcaaataa-aaatttaacaagagaaaatatatgtcattt-ataaaagtttctattgagtttttatgagtat 2423234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 10090555 - 10090674
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    ||||| ||||||||||||||   | |||||| ||| |||||||| ||||| || ||| | |||||||||||| ||||||| | |||||||||| ||||      
T  10090555 tagcacataaatacattttttatagaaaaagcaaagaagaaactcaacaagagaaaaaagatgtcattttattaaagttttctttgaatttctctgag-- 10090652  T
Q  203 tattagtctagatgacatatat 224  Q
    |||| |||||||||| ||||||    
T  10090653 tattggtctagatgatatatat 10090674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 36568047 - 36568140
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| || ||||| | || |||| ||||||||| || ||| |||||||||| ||| |||||||||||||| ||| |||||||||    
T  36568047 ataaatacatttttgaaagaaaaa-acaagaagacacttaacaagagaaaaaatatgtcattgtatcaaagtttccattgagtttttatgagtat 36568140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 34111523 - 34111451
Alignment:
Q  114 tacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    |||||||||| ||||||||| ||| ||||||||||||||   |||| | |||||||||||||||||| ||||||||    
T  34111523 tacatttttgaaataaaaagcaaagaagaaacttaacaa---gaaaaaaatgtcattttataaaagtgtccattga 34111451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 11402967 - 11403023
Alignment:
Q  147 taacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| || ||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  11402967 taacaagagaaaaaatatgtcattttatacaagtttccattgaatttatatgagtat 11403023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 32721163 - 32721088
Alignment:
Q  104 agcatataaatacatttttggaataaaaa-gaaaataagaaacttaacaaaaggaaatatatgtcattttataaaa 178  Q
    |||| ||||||||||||||  |||||||| | ||| || ||||||||||| || ||||||||||||||||||||||    
T  32721163 agcacataaatacattttttaaataaaaaagcaaagaataaacttaacaagagaaaatatatgtcattttataaaa 32721088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 38147459 - 38147533
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    ||||||||| |||  ||||| ||||||| || ||| |||| ||||||||||||||||| |||||| |||||||||    
T  38147459 aataaaaagtaaagcagaaatttaacaagagaaaaaatatatcattttataaaagttttcattgagtttctatga 38147533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 4414550 - 4414646
Alignment:
Q  106 catataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| |||||| ||||| ||||||||| ||| |||||||||| ||| || ||| | |  ||||||||||||||||| |||||| ||||||| |||||    
T  4414550 catatgaatacacttttgaaataaaaagcaaagaagaaacttatcaagagaaaaaaaaa-tcattttataaaagttttcattgagtttctataagtat 4414646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 31075372 - 31075299
Alignment:
Q  109 ataaatacatttttggaataaaaa-gaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtt 181  Q
    ||||||||| ||||| |||||||| | ||| |||||||||||||| || ||| |||||||||||||| ||||||    
T  31075372 ataaatacacttttgaaataaaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttatgaaagtt 31075299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 35727301 - 35727393
Alignment:
Q  106 catataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    |||||||| | ||||||| |||||||||  || || ||||||||||| |  ||| | ||||||||||||||||||| ||||||| |||||||||    
T  35727301 catataaacatatttttgaaataaaaagttaagaaaaaacttaacaataaaaaa-acatgtcattttataaaagttaccattgagtttctatga 35727393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 39052877 - 39052982
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||||  ||||||| | ||| |||||| ||||||| || | | |||| | ||||||||||||||| || ||| |||||||    
T  39052877 tcaagtagcacataaatatatttttaaaataaaatgtaaagaagaaatttaacaagagaacaaatatataattttataaaagttttcactgagtttctat 39052976  T
Q  198 gagtat 203  Q
    ||||||    
T  39052977 gagtat 39052982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 26690138 - 26690214
Alignment:
Q  107 atataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttc 183  Q
    ||||||||| ||||||| ||||||||  ||| |||||||||||||| || ||| |||| ||| ||| ||||||||||    
T  26690138 atataaatatatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatatcaatttttaaaagtttc 26690214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 26959870 - 26959946
Alignment:
Q  107 atataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttc 183  Q
    ||||||||| ||||||| ||||||||  ||| |||||||||||||| || ||| |||| ||| ||| ||||||||||    
T  26959870 atataaatatatttttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatatcaatttttaaaagtttc 26959946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 691295 - 691252
Alignment:
Q  162 tatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||    
T  691295 tatgtaattttataaaagtttccattgagtttctatgtgtatat 691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 23418318 - 23418392
Alignment:
Q  127 taaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagt 201  Q
    ||||||| ||| |||||||||||||| || ||| |||||||| |||||| |||||| ||||   |||||||||||    
T  23418318 taaaaagtaaagaagaaacttaacaagagaaaaaatatgtcagtttatagaagtttgcattttgtttctatgagt 23418392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 8542077 - 8541986
Alignment:
Q  111 aaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata--tatgtcattttataaaagtttccattgaatttctatgagt 201  Q
    ||||| ||||||| ||||||||| ||| ||  |||||||||| || ||| |  |||||||||||||||| |||| |||||| |||||||||||    
T  8542077 aaataaatttttgaaataaaaagcaaagaaagaacttaacaagagaaaaaaaatatgtcattttataaa-gttttcattgagtttctatgagt 8541986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 28224593 - 28224520
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaag-gaaatatatgtcatttta-taaaagtttccattgaatttctatga 199  Q
    |||||| ||| |||||||||||||||||  ||| ||||||||||||| ||||| |||  |||||||||||||||    
T  28224593 aaaaagcaaagaagaaacttaacaaaagaaaaaaatatgtcattttattaaaattttgaattgaatttctatga 28224520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 40109381 - 40109332
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaactt 147  Q
    ||||||||||  |||||||||||||| ||||||||| ||| |||||||||    
T  40109381 tcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaactt 40109332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 6595293 - 6595373
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    ||||||||||||| ||  ||  |||||| || |||  ||||| |||||||||||||||| |||||  ||||||||||||||    
T  6595293 aataaaaagaaaagaaagaatctaacaagagaaaaagtatgtaattttataaaagtttctattgagattctatgagtatat 6595373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 25495478 - 25495518
Alignment:
Q  163 atgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  25495478 atgtcattttattaaagtttccattgaacttatatgagtat 25495518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 25715571 - 25715665
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||  ||||||||| ||  ||||| |||||||| ||  || ||||||||||||||||||   | |||||||||||||    
T  25715571 tcaagtagcacataaatacattttttaaataaaaagtaa--aagaaccttaacaagag--aaaatatgtcattttataaaaaaattcattgaatttcta 25715665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 34881051 - 34880977
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaatatatgtcatttt-ataaaagtttccattgaatttctatgagtat 203  Q
    |||||| ||| |||||||||| || | ||||| |||||||||||| ||||||||||||||||| ||| |||||||||    
T  34881051 aaaaagcaaagaagaaacttaccaca-ggaaaaatatgtcatttttataaaagtttccattgagttt-tatgagtat 34880977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 28441790 - 28441895
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||  |||||||| ||||||||  ||| ||||||||||||||||| ||  |||||||||||||||||||||| |||||| ||| |||    
T  28441790 tcaagtagcacataaaaccatttttgaaataaaaaacaaagaagaaacttaacaaaagaaagaatatgtcattttataaaagttttcattgagtttttat 28441889  T
Q  198 gagtat 203  Q
    ||||||    
T  28441890 gagtat 28441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 40436760 - 40436863
Alignment:
Q  100 aaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    |||||||| |||||||| |||||  ||||||||| ||| ||| ||  ||||||||| ||| |||||||||||||||||| |||||||||| ||||||| |    
T  40436760 aaatagcacataaatacgttttttaaataaaaagcaaagaaggaatctaacaaaagaaaaaatatgtcattttataaaaatttccattgagtttctataa 40436859  T
Q  200 gtat 203  Q
    ||||    
T  40436860 gtat 40436863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 9012592 - 9012506
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||| |||||||||| |||| | | || || ||| |||||||||||||| || |||||||||||||||||||||||||||||||||    
T  9012592 tagcacataaatacatctttgaagttaatagcaaagaagaaacttaacaagagaaaatatatgtcattttataaaagtttccattga 9012506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 12193222 - 12193119
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||||||||||||  | |||||| ||| || ||||||||||| |  ||| | |||||||||||| ||||||||||||||||||||||    
T  12193222 tcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaacaaga--aaaaaaatgtcattttattaaagtttccattgaatttctat 12193125  T
Q  198 gagtat 203  Q
    ||||||    
T  12193124 gagtat 12193119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 12437650 - 12437547
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||||||||||||  | |||||| ||| || ||||||||||| |  ||| | |||||||||||| ||||||||||||||||||||||    
T  12437650 tcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaacaaga--aaaaaaatgtcattttattaaagtttccattgaatttctat 12437553  T
Q  198 gagtat 203  Q
    ||||||    
T  12437552 gagtat 12437547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 27674840 - 27674945
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||  ||||| ||||||||| ||| ||  ||||||| || || ||| ||||||||||||||||||||||||| ||| |||||||    
T  27674840 tcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattttataaaagtttccaatgagtttctat 27674939  T
Q  198 gagtat 203  Q
    ||||||    
T  27674940 gagtat 27674945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 1271485 - 1271559
Alignment:
Q  129 aaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| ||| |||||||||||||| || ||| |||| ||||||||| |||||||||||||| |||||||||||||    
T  1271485 aaaagcaaagaagaaacttaacaagagaaaaaatatatcattttattaaagtttccattgagtttctatgagtat 1271559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 15452416 - 15452323
Alignment:
Q  110 taaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||| |||||||   ||| |||||| ||||||| |  ||| ||||||||||| |||||||| |||||||| |||||||||||||    
T  15452416 taaatacatttttgaaataaaacacaaagaagaaatttaacaagaaaaaaaatatgtcatttaataaaagtctccattgagtttctatgagtat 15452323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 12660004 - 12659927
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||||||||||||||| |  || ||| ||||||||||||||| |||||| |||||| |||||||||||||    
T  12660004 aataaaaagtaaataagaaacttaatacgagaaaaaatatgtcattttatagaagttt-cattgagtttctatgagtat 12659927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 44337069 - 44337174
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatat-gtcattttataaaagtttccattgaatttcta 196  Q
    |||| |||| ||||||||| ||||||  |||||||||||| |||||||||||||| || ||| | || ||||||||||||||||||  ||||| ||||||    
T  44337069 tcaagtagcgtataaatac-tttttgacataaaaagaaaagaagaaacttaacaagagtaaaaaaattgtcattttataaaagttttgattgagtttcta 44337167  T
Q  197 tgagtat 203  Q
     ||||||    
T  44337168 cgagtat 44337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 24681850 - 24681758
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattga 189  Q
    |||| ||||| |||||||||||||||  | |||||  ||| |||||||||||||| || ||| | ||||||||||||| ||||||||||||||    
T  24681850 tcaagtagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaaatatgtcattttattaaagtttccattga 24681758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 11219287 - 11219382
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||||||  | |||||   || ||||||||||||||||| ||| | ||||||||||||| ||||||| |||||||||| || ||||||    
T  11219287 ataaatacatttttgatagaaaaaaccaagaagaaacttaacaaaagaaaaaaatatgtcattttattaaagttttcattgaatttataagagtat 11219382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 30252828 - 30252726
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaag--gaaatatatgtcattttataaaagtttccattgaatttctatgag 200  Q
    |||||||||||||||||||||  | |||||| ||| |||||||| ||||| ||   ||| | |||||||||||| ||||||| ||||||| || ||||||    
T  30252828 tagcatataaatacatttttgatagaaaaagcaaagaagaaactaaacaagagaaaaaaaaaatgtcattttattaaagttttcattgaaattatatgag 30252729  T
Q  201 tat 203  Q
    |||    
T  30252728 tat 30252726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 4785572 - 4785646
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttc 183  Q
    ||||||||||||||| || ||||||| || ||||||||| |||| || ||| |||| ||||||||| ||||||||    
T  4785572 ataaatacatttttgaaagaaaaagataagaagaaactttacaagagaaaaaatatctcattttattaaagtttc 4785646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 18755075 - 18754985
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    ||||||||||| ||| || |||||  ||| |||||||||||||| || ||| | ||  ||||||||||||||||| ||||| |||||||||    
T  18755075 ataaatacattattgaaagaaaaaataaagaagaaacttaacaagagaaaaaaaattccattttataaaagtttctattgagtttctatga 18754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 41346242 - 41346336
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||  ||||||||| |   || |||| |||||| || ||| | ||||||| ||||||||| ||||||||| |||||||||||||    
T  41346242 ataaatacatttttaaaataaaaagcagcgaaaaaacctaacaagagaaaaaacatgtcatgttataaaagcttccattgagtttctatgagtat 41346336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 12073968 - 12073877
Alignment:
Q  112 aatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||  | ||||||| |||  ||||||||| ||| || ||| |||||||||||| ||||||||| |||| | ||| |||||||||    
T  12073968 aatacattttttaattaaaaagcaaagtagaaacttagcaagagaaaaaatatgtcattttgtaaaagttttcattaagtttttatgagtat 12073877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 31477890 - 31477847
Alignment:
Q  162 tatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||    
T  31477890 tatgtaattttgtaaaagtttccattgagtttctatgagtatat 31477847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 3129411 - 3129357
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaa 152  Q
    |||| ||||| ||||||||||||||| ||||||| | ||| ||||||||||||||    
T  3129411 tcaagtagcacataaatacatttttgaaataaaatgcaaagaagaaacttaacaa 3129357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 28801899 - 28801999
Alignment:
Q  106 catataaatacatttttggaataaaaagaaaataagaaacttaacaa---aaggaaatatatgtcattttataaaagtttccattgaatttctatgagta 202  Q
    |||||||||||||||||  ||||||| | ||| |||| |||||| ||   ||| ||| | |||||||||||||||| ||| |||||| ||||||| ||||    
T  28801899 catataaatacatttttaaaataaaatgcaaagaagatacttaaaaacagaagaaaaaaaatgtcattttataaaaatttacattgagtttctataagta 28801998  T
Q  203 t 203  Q
    |    
T  28801999 t 28801999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 30942944 - 30943003
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacatat 222  Q
    |||||||||||||||||||||| |||||| ||||||| |  |||||| ||||| ||||||||    
T  30942944 atatgtcattttataaaagttttcattgagtttctataa--atattattctaggtgacatat 30943003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 44024560 - 44024602
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| | |||||||||||||||||| |||||||||    
T  44024560 atatgtcattttgttaaagtttccattgaatttatatgagtat 44024602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 3155721 - 3155681
Alignment:
Q  163 atgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| ||||||||||||||| |||||| |||||||||||||    
T  3155721 atgttattttataaaagttttcattgagtttctatgagtat 3155681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 39151998 - 39152065
Alignment:
Q  111 aaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaag 179  Q
    ||||||||||||| ||||||||  ||| |||||||||||||| | |||| ||||| |||| ||||||||    
T  39151998 aaatacatttttgtaataaaaaataaagaagaaacttaacaaga-gaaaaatatgacattctataaaag 39152065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 2832147 - 2832042
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||| ||||||| ||||||||  ||| |||||||||||||| || ||| | |||||||||||||||||||| |||||| ||| |||    
T  2832147 tcaagtagcacataaatatatttttgaaataaaaaccaaagaagaaacttaacaagagaaaaaaaatgtcattttataaaagtttacattgagtttttat 2832048  T
Q  198 gagtat 203  Q
    ||||||    
T  2832047 gagtat 2832042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 44651283 - 44651388
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| |||||||| |||||  ||||||||  ||| ||| ||  |||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  44651283 tcaagtagcacataaatacgttttttaaataaaaaacaaagaaggaatctaacaagagaaaaaatatgtcattttataaaagtttccattgaatttctat 44651382  T
Q  198 gagtat 203  Q
    ||||||    
T  44651383 gagtat 44651388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 54122643 - 54122744
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||  || |||||| |||||||||||||||| | || ||| ||||||||| |||| |||||||||||||| |||||||    
T  54122643 tcaagtagcacataaatacatttttaaaagaaaaagcaaataagaaacttaaccagagaaaaaatatgtcatattattaaagtttccattgagtttctat 54122742  T
Q  198 ga 199  Q
    ||    
T  54122743 ga 54122744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 45629524 - 45629618
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||| ||||||| || |||||  ||| ||||||||||||||||  ||| |||||||||||||| ||||||||| ||||| ||||||||||||    
T  45629524 ataaatagatttttgaaagaaaaaacaaagaagaaacttaacaaaataaaaaatatgtcattttattaaagtttccgttgaaattctatgagtat 45629618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 51660748 - 51660658
Alignment:
Q  113 atacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||| ||||| ||||||||| ||| |||||||||| ||| || ||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  51660748 atacacttttgaaataaaaagtaaagaagaaacttatcaagagaaaaaatatgtcattttataaaagttttcattgagtttctataagtat 51660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 17144495 - 17144399
Alignment:
Q  98 tcaaatagcatataaatacatttttggaa-taaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaattt 193  Q
    |||||||||||||||||||||||||  || ||||||| ||| || ||| |||||||  | ||| |||||| ||||||||||||||||||||||||||    
T  17144495 tcaaatagcatataaatacatttttttaaataaaaagcaaagaataaatttaacaagtgaaaaaatatgttattttataaaagtttccattgaattt 17144399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 38651764 - 38651684
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtatat 205  Q
    ||||||||| ||| ||||||  |||||| || ||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  38651764 aataaaaagcaaagaagaaatctaacaagagaaaaaatatgtaattttataaaagtttccattgagtttctatgagtatat 38651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 55467391 - 55467299
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| || |||||  | | ||||||||||||||||| ||| | |||||||||||| ||||||| |||||| |||||||||||||    
T  55467391 ataaatacatttttgaaagaaaaa--acagaagaaacttaacaaaagaaaaaacatgtcattttattaaagttttcattgagtttctatgagtat 55467299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 22472815 - 22472721
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| |||||||   |||||||||||||||||| || ||| ||||||||||| ||| |  ||| |||||| |||||||||||||    
T  22472815 ataaatacatttttgaaataaaagacaaataagaaacttaacaagagaaaaaatatgtcatttgatagatattttcattgagtttctatgagtat 22472721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 4280624 - 4280709
Alignment:
Q  114 tacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatga 199  Q
    |||||||||| ||||||||  ||| || ||||||||||| || ||| ||||||||||||||| |||||| |||||| |||||||||    
T  4280624 tacatttttgaaataaaaaacaaagaataaacttaacaagagaaaaaatatgtcattttatagaagttttcattgagtttctatga 4280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 2566064 - 2565976
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaata-tatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatga 217  Q
    |||||| ||| ||||||||||||||||| ||| | |||||||||| || |||||||||||||||||||||| |  ||||| ||||||||||    
T  2566064 aaaaagcaaagaagaaacttaacaaaagaaaaaaatatgtcatttcattaaagtttccattgaatttctataa--atattggtctagatga 2565976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 26758580 - 26758655
Alignment:
Q  128 aaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||| |||||||||||||||||| || ||| ||||||||||| || ||||||| |||||| |||||||| ||||    
T  26758580 aaaaagtaaataagaaacttaacaagagaaaaaatatgtcatttgattaaagttttcattgagtttctatgggtat 26758655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 37045636 - 37045737
Alignment:
Q  103 tagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaata--tatgtcattttataaaagtttccattgaatttctatgag 200  Q
    ||||| ||||||||||||||  ||||||||| ||||||  |||||||||| || ||| |  |||| |||||||||||||||| |||||| ||||||||||    
T  37045636 tagcacataaatacattttta-aataaaaagcaaataatgaacttaacaagagaaaaaaaatatgacattttataaaagttttcattgagtttctatgag 37045734  T
Q  201 tat 203  Q
    |||    
T  37045735 tat 37045737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 21562884 - 21562977
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| |||||||||  || ||||| |||||||| || ||| ||||||||||| |||||| ||| ||| || |||||||||||||    
T  21562884 ataaatacatttttgaaataaaaagcgaagaagaa-cttaacaagagaaaaaatatgtcatttcataaaaatttacatcgagtttctatgagtat 21562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 22256060 - 22255954
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaat-aagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| |||||||||||||||||||||  |  |||| | ||  |||||||||||||| || ||| ||||  |||||||| |||||||||||||||||| ||    
T  22256060 tcaagtagcatataaatacatttttgataggaaaaaacaacgaagaaacttaacaagagaaaaaatataacattttattaaagtttccattgaatttata 22255961  T
Q  197 tgagtat 203  Q
    |||||||    
T  22255960 tgagtat 22255954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 48169004 - 48169098
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||| || ||| || ||| |||||||||| || ||| ||| |||||||||||||| ||||||| |||| | ||||| |||||||    
T  48169004 ataaatacatttttgaaagaaatagcaaagaagaaacttagcagaagaaaaaatatgtcattttattaaagttttcattaagtttctttgagtat 48169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 25919014 - 25918910
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctat 197  Q
    |||| ||||| ||||||||||||||| || |||||  ||| || ||||||||||| |  ||| || ||||||||||| |||||||||||||| |||||||    
T  25919014 tcaagtagcacataaatacatttttgaaacaaaaaacaaagaaaaaacttaacaagataaaa-atttgtcattttattaaagtttccattgagtttctat 25918916  T
Q  198 gagtat 203  Q
     |||||    
T  25918915 aagtat 25918910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 42362973 - 42362876
Alignment:
Q  104 agcatataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||| |||||||| |||||| ||||||||| ||| ||| |||| ||||| || ||| ||  ||||||||||||||||||||||||| ||| || ||||||    
T  42362973 agcacataaatacgtttttgaaataaaaagtaaagaaggaactaaacaagagaaaaaat--gtcattttataaaagtttccattgagtttataagagtat 42362876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 52632459 - 52632556
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaa---aaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||  ||||||||| ||| ||||||||  ||||   ||  ||| |||||||||||||||||||||||| |||| ||| |||||||||    
T  52632459 ataaatacattttttaaataaaaagcaaagaagaaactccacaagataaaaaaaaatatgtcattttataaaagtttccgttgagtttgtatgagtat 52632556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 8355649 - 8355755
Alignment:
Q  98 tcaaatagcatataaatacatttttggaataaaaagaaaataagaaacttaacaaa-aggaaatatatgtcattttataaaagtttccattgaatttcta 196  Q
    |||| ||||| ||||||||||||||   | |||||  ||| |||||||||||| || || ||| | |||||||||||| ||||||| |||| ||||||||    
T  8355649 tcaagtagcacataaatacattttttatagaaaaaacaaagaagaaacttaactaagagaaaaaaaatgtcattttattaaagttttcattaaatttcta 8355748  T
Q  197 tgagtat 203  Q
    |||||||    
T  8355749 tgagtat 8355755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 20846806 - 20846879
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagttt 182  Q
    |||| |||||||||  ||||||||  ||| ||||||||| |||| || ||| ||||||||||||||||||||||    
T  20846806 ataattacattttttaaataaaaaataaagaagaaactttacaagagaaaaaatatgtcattttataaaagttt 20846879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 38681600 - 38681657
Alignment:
Q  162 tatgtcattttataaaagtttccattgaatttctatgagtatattagtctagatgacata 221  Q
    ||||||||||||||||||||| |||||||||| || |||  |||||||||||||| ||||    
T  38681600 tatgtcattttataaaagttttcattgaatttttacgag--tattagtctagatggcata 38681657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 50578697 - 50578655
Alignment:
Q  161 atatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||||||  ||||||||| |||||||||||||    
T  50578697 atatgtcattttataaaaacttccattgagtttctatgagtat 50578655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 46253148 - 46253108
Alignment:
Q  163 atgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    |||||||||||| ||||||| |||||| |||||||||||||    
T  46253148 atgtcattttattaaagttttcattgagtttctatgagtat 46253108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 427977 - 428071
Alignment:
Q  109 ataaatacatttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||| ||||||| |||||||||  || |||||||||||||| || ||| |||||||||||||||||||||| |||||| |||  ||||||||    
T  427977 ataaatatatttttgaaataaaaaggcaagaagaaacttaacaagagaaaaaatatgtcattttataaaagttttcattgagttttaatgagtat 428071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 405859 - 405822
Alignment:
Q  166 tcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||||||||||||||||||||||||||||||||    
T  405859 tcattttataaaagtttccattgaatttctatgagtat 405822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 6329 - 6407
Alignment:
Q  125 aataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgagtat 203  Q
    ||||||||| ||| |||||||||||||| || ||| ||||||||| ||||| |||||| |||| | |||||||||||||    
T  6329 aataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatgttatagaagttttcattaagtttctatgagtat 6407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 1515 - 1585
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||| ||||||||  ||| | |||||||||||| || ||| |||||||||||||||||||||| ||||||    
T  1515 ttttgcaataaaaattaaagaggaaacttaacaagagaaaaaatatgtcattttataaaagttttcattga 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 3109 - 3178
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||| ||||||||  ||| |||||||||||||| || ||| |||||||||||||||||||||| ||||||    
T  3109 ttttgcaataaaaattaaagaagaaacttaacaagagaaaa-atatgtcattttataaaagttttcattga 3178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 4776 - 4845
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||| ||||||||  ||| |||||||||||||| || ||| |||||||||||||||||||||| ||||||    
T  4776 ttttgcaataaaaattaaagaagaaacttaacaagagaaaa-atatgtcattttataaaagttttcattga 4845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 8084 - 8154
Alignment:
Q  119 ttttggaataaaaagaaaataagaaacttaacaaaaggaaatatatgtcattttataaaagtttccattga 189  Q
    ||||| ||||||||  ||| | |||||||||||| || ||| |||||||||||||||||||||| ||||||    
T  8084 ttttgcaataaaaattaaagaggaaacttaacaagagaaaaaatatgtcattttataaaagttttcattga 8154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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