View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11135_low_1 (Length: 886)
Name: NF11135_low_1
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11135_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 625; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 662
Target Start/End: Original strand, 34319850 - 34320504
Alignment:
| Q |
11 |
cacagacaaacgtgtattcaaagaccacttaatacatttgtacatgacacacacacaaacaaaggggtatttaaagatgaacaattttctaacttcattg |
110 |
Q |
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| T |
34319850 |
cacagacaaacgtgtattcaaagaccacttaatacatttgtacatgacacacacacaaacaaaggggtatttaaagatgaacaattttctaacttcattg |
34319949 |
T |
|
| Q |
111 |
gggcagacccatttgtacataaccctttggtcttgaagcaggctagtctaaacctattttgtcccctttacttttcttctac---ataactagatcatct |
207 |
Q |
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| T |
34319950 |
gggcagacccatttgtacataaccctttggtcttgaagcaggctagtctaaacctattttgtcccctttacttttcttctactccataactagatcatct |
34320049 |
T |
|
| Q |
208 |
gcaatagtgtaaaacgtgcatgttatggtaacagataaagtgtgcaaataattgattaatcaccaccgtcacactcaagtagtcaagtttaatcccacta |
307 |
Q |
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| T |
34320050 |
gcaatagtgtaaaacgtgcatgttatggtaacagataaagtgtgcaaataattgattaatcaccaccgtcacactcaagtagtcaagtttaatcccacta |
34320149 |
T |
|
| Q |
308 |
tacttataactatccattgaaaatcaaagataagattagacattgataacttttttaaattaaatttatctccatatcatgcatattataaaagctagga |
407 |
Q |
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| T |
34320150 |
tacttataactatccattgaaaatcaaagataagattagacattgataacttttttaaattaaatttatctccatatcatgcatattataaaagctagga |
34320249 |
T |
|
| Q |
408 |
attgtaagaataatcatgtctgagggcatccagccctgatattgcctaggccagaaaatttgaggccacattttgctttttatctgttccttgtgtaaga |
507 |
Q |
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| T |
34320250 |
attgtaataataatcatgtctgaaggcatccagccctgatattgccaaggccagaaaatttgaggccacattttgctttttatctgttccttgtgtaaga |
34320349 |
T |
|
| Q |
508 |
catgatttccaaagccaaacgattctgtttgctttttagtgtacatttgaatggacccttttagcttcaaataggaaactctgtctctgatgtagatagt |
607 |
Q |
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| T |
34320350 |
catgatttccaaagccaaacgattctgtttgctttttagtgtacatttgaatggacccttttagcttcaaataggaaactctgtctctgatgtagatagt |
34320449 |
T |
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| Q |
608 |
tttgattagtctttcaaaatgagtaactcattaacatgtgactatagcatgaccc |
662 |
Q |
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| T |
34320450 |
tttgattagtctttcaaaatgagtaactcattaacatgtgattatagcatgaccc |
34320504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 723 - 869
Target Start/End: Original strand, 34320565 - 34320709
Alignment:
| Q |
723 |
gagactggaatattagctattattttcttactttactaacatgttattttagaggagttaaatctgtttagtagaggtgactgatatctctcgacatgat |
822 |
Q |
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| T |
34320565 |
gagactggaatattagctattattttcttactttactaacatgttattttagaggagttaaatctgtttagtagaggtgactgata--tctcgacatgat |
34320662 |
T |
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| Q |
823 |
gaattaatgttcaaattttgacggaaagatgtttctagatttagttg |
869 |
Q |
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| T |
34320663 |
gaattaatgttctaattttgacggaaagatgtttctagatttagttg |
34320709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 34319695 - 34319666
Alignment:
| Q |
92 |
caattttctaacttcattggggcagaccca |
121 |
Q |
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| T |
34319695 |
caattttctaacttcattggggcagaccca |
34319666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 41730666 - 41730703
Alignment:
| Q |
24 |
gtattcaaagaccacttaatacatttgtacatgacaca |
61 |
Q |
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| T |
41730666 |
gtattcaaagaccacttaatgcatttgtacataacaca |
41730703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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