View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11135_low_2 (Length: 802)
Name: NF11135_low_2
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11135_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 631; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Complemental strand, 490174 - 489469
Alignment:
| Q |
1 |
ttgccatcaattccacaagcccttggtttctctgaagcatagaccctcatctcaccagcacctctaattccaacttgcaccaaatcttgagcctcaagat |
100 |
Q |
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| T |
490174 |
ttgccatcaattccacaagcccttggtttctctgaagcatagaccctcatctcaccagcacctctaattccaacttgcaccaaatcttgagcctcaagat |
490075 |
T |
|
| Q |
101 |
attcaaatgactgaattgccccaccattgtttagcatgttaaccaaaccaataggagcaaacttcaaggactttttaggaaataaagtgactggagaaac |
200 |
Q |
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| T |
490074 |
attcaaatgactgaattgccccaccattgtttagcatgttaaccaaaccaataggagcaaacttcaaggactttttaggaaataaagtgactggagaaac |
489975 |
T |
|
| Q |
201 |
agttataagctcaaagttgaatggctccaaagagatttcttcaatttcagacggggagaaaagtttgagcttcttggcttggctgaaatacaaagcaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
489974 |
agttataagctcaaagttgaatggctccaaagagatttcttcaatttcagatggagagaaaagtttcagcttcttggcttggctgaaatacaaagcaaaa |
489875 |
T |
|
| Q |
301 |
acttgaactccttcaatgggaattggattctttccactgttccattcaatgtctttgatgttgatcttagttgataccgaatgtgaaaactcagaagcac |
400 |
Q |
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| T |
489874 |
acttgaactccttcaatgggaattggattctttccactgttccattcaatgtctttgatgttgatcttagttgataccgaatgtgaaaactcagaagcac |
489775 |
T |
|
| Q |
401 |
atttgtttgatcttatctcgcgaaaccatcctcctccttggcagttaaacacaccaagaactccggtgtactgttat-------nnnnnnngtgttaatt |
493 |
Q |
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| T |
489774 |
atttgtttgatcttatctcgcgaaaccatcctcctccttggcagttaaacacaccaagaactccagtgtactgttataaaaaaaaaaaaaagtgttaatt |
489675 |
T |
|
| Q |
494 |
gtgaatcgcagaaaataatggtttattcaaacttcgttatgctacagtgttatagtgcttatatagctgctatatatttgacaacactttatactaacaa |
593 |
Q |
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| T |
489674 |
gtgaatcgcagaaaataatggtttattcaaacttcgttatgctatagtgttatagtgctgatatagctgctatatatttgacaacactttatactaacaa |
489575 |
T |
|
| Q |
594 |
gtatattgcggaacaataatgatttgatcaaattatgtgtcgtagcaactattctaccgactttgaacatctctagtccctccagctagatcaagtcatt |
693 |
Q |
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| T |
489574 |
gtatattgcggaacaataatgatttgatcaaattatgtgtcgtagcaactattctaccgactttgaacatctctagtctctccagctagatcaagtcatt |
489475 |
T |
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| Q |
694 |
ggatta |
699 |
Q |
| |
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|||||| |
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| T |
489474 |
ggatta |
489469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 697 - 802
Target Start/End: Complemental strand, 489214 - 489109
Alignment:
| Q |
697 |
ttaccttattgaggttccaaattttgagcatagttttgccatcatgtaaaggatcagaaaagagacagtccttagttgggagagcataggtttcacatct |
796 |
Q |
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| T |
489214 |
ttaccttattgaggttccaaattttgagcatagttttgccatcatgtaaaggatcagaaaagagacagtccttagttgggagagcataggtttcacatct |
489115 |
T |
|
| Q |
797 |
aaggat |
802 |
Q |
| |
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|||||| |
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| T |
489114 |
aaggat |
489109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 24769368 - 24769309
Alignment:
| Q |
568 |
tatttgacaacactttatactaacaagtatattgcggaacaataatgatttgatcaaatt |
627 |
Q |
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| T |
24769368 |
tatttgacaatactttgtactaaatagtgtattgcagaacaataatgatttgttcaaatt |
24769309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 705 - 748
Target Start/End: Original strand, 43637628 - 43637671
Alignment:
| Q |
705 |
ttgaggttccaaattttgagcatagttttgccatcatgtaaagg |
748 |
Q |
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| T |
43637628 |
ttgaggttccaaattttgagcattgttttgccatcatgtaaagg |
43637671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 568 - 619
Target Start/End: Original strand, 50402655 - 50402706
Alignment:
| Q |
568 |
tatttgacaacactttatactaacaagtatattgcggaacaataatgatttg |
619 |
Q |
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| T |
50402655 |
tatttgacaacactttatactaaatagcatattgcggaacaatagtgatttg |
50402706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 748
Target Start/End: Original strand, 34696874 - 34696917
Alignment:
| Q |
705 |
ttgaggttccaaattttgagcatagttttgccatcatgtaaagg |
748 |
Q |
| |
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||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
34696874 |
ttgagattccaaattttgagcattgtttggccatcatgtaaagg |
34696917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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