View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11135_low_3 (Length: 484)

Name: NF11135_low_3
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11135_low_3
NF11135_low_3
[»] chr7 (26 HSPs)
chr7 (10-443)||(21237765-21238209)
chr7 (311-416)||(32942095-32942200)
chr7 (350-446)||(524852-524948)
chr7 (307-443)||(29628065-29628201)
chr7 (309-443)||(8118269-8118403)
chr7 (307-403)||(8568583-8568679)
chr7 (307-403)||(26215153-26215249)
chr7 (309-416)||(23729347-23729454)
chr7 (349-416)||(46147215-46147282)
chr7 (299-416)||(30855044-30855154)
chr7 (307-412)||(11834519-11834624)
chr7 (350-443)||(20334584-20334677)
chr7 (307-412)||(40848808-40848913)
chr7 (299-443)||(27054721-27054865)
chr7 (384-442)||(7685908-7685966)
chr7 (307-396)||(2409002-2409091)
chr7 (311-416)||(10338827-10338931)
chr7 (367-424)||(25007348-25007405)
chr7 (363-416)||(34751001-34751054)
chr7 (368-416)||(43202447-43202495)
chr7 (384-443)||(31013042-31013101)
chr7 (310-396)||(13852269-13852355)
chr7 (350-416)||(23032674-23032740)
chr7 (302-396)||(47903200-47903294)
chr7 (323-416)||(6880122-6880215)
chr7 (363-416)||(35820103-35820156)
[»] chr4 (27 HSPs)
chr4 (311-438)||(48293399-48293526)
chr4 (307-416)||(36106435-36106545)
chr4 (299-416)||(5122400-5122517)
chr4 (299-416)||(20986371-20986488)
chr4 (350-438)||(45983384-45983472)
chr4 (299-424)||(23449992-23450117)
chr4 (311-416)||(23625917-23626022)
chr4 (300-416)||(48338292-48338407)
chr4 (363-422)||(49640861-49640920)
chr4 (307-445)||(43630535-43630673)
chr4 (311-443)||(29232714-29232846)
chr4 (348-415)||(14866775-14866842)
chr4 (364-443)||(48602508-48602587)
chr4 (311-416)||(28147741-28147846)
chr4 (368-424)||(7784488-7784544)
chr4 (307-377)||(40900138-40900208)
chr4 (348-402)||(46471438-46471492)
chr4 (323-401)||(52096064-52096142)
chr4 (309-398)||(4642381-4642470)
chr4 (303-376)||(5262020-5262093)
chr4 (299-380)||(10218628-10218709)
chr4 (299-416)||(21068995-21069112)
chr4 (307-396)||(23937554-23937643)
chr4 (367-424)||(26674128-26674185)
chr4 (307-416)||(32223335-32223444)
chr4 (320-400)||(40494394-40494473)
chr4 (384-416)||(42198818-42198850)
[»] chr5 (20 HSPs)
chr5 (311-445)||(36567683-36567817)
chr5 (299-416)||(27572061-27572178)
chr5 (349-443)||(2588974-2589068)
chr5 (310-416)||(1048729-1048834)
chr5 (299-416)||(26007393-26007508)
chr5 (367-443)||(2422824-2422900)
chr5 (384-443)||(2797125-2797184)
chr5 (372-443)||(36760136-36760207)
chr5 (371-416)||(6633341-6633386)
chr5 (307-396)||(30265827-30265916)
chr5 (307-416)||(35240840-35240949)
chr5 (299-416)||(40692445-40692560)
chr5 (384-443)||(2803287-2803346)
chr5 (320-403)||(18432049-18432134)
chr5 (331-416)||(14652434-14652519)
chr5 (363-416)||(17132106-17132159)
chr5 (363-416)||(22747589-22747642)
chr5 (367-416)||(41454881-41454930)
chr5 (313-377)||(1681086-1681150)
chr5 (365-425)||(35726981-35727041)
[»] chr2 (16 HSPs)
chr2 (299-423)||(12041598-12041722)
chr2 (363-443)||(44085503-44085583)
chr2 (350-416)||(27301500-27301566)
chr2 (299-432)||(1330959-1331092)
chr2 (307-416)||(5862647-5862756)
chr2 (310-412)||(17762702-17762804)
chr2 (354-424)||(33426539-33426609)
chr2 (307-396)||(17916887-17916976)
chr2 (307-416)||(28790463-28790572)
chr2 (299-402)||(12884480-12884578)
chr2 (353-416)||(30759664-30759727)
chr2 (349-438)||(13193898-13193992)
chr2 (354-416)||(41461086-41461148)
chr2 (357-445)||(36500619-36500712)
chr2 (307-396)||(44979805-44979894)
chr2 (350-402)||(30761786-30761838)
[»] chr3 (18 HSPs)
chr3 (299-424)||(55467645-55467775)
chr3 (299-416)||(54121970-54122087)
chr3 (308-416)||(8557974-8558082)
chr3 (310-416)||(2832410-2832521)
chr3 (307-438)||(38651983-38652113)
chr3 (307-416)||(17144746-17144854)
chr3 (309-432)||(52631997-52632121)
chr3 (307-416)||(26291972-26292081)
chr3 (307-416)||(42363241-42363350)
chr3 (353-417)||(44650967-44651031)
chr3 (299-396)||(6004423-6004520)
chr3 (311-416)||(10481661-10481766)
chr3 (371-416)||(25465821-25465866)
chr3 (312-416)||(26758186-26758290)
chr3 (350-424)||(21238043-21238116)
chr3 (310-400)||(45629153-45629243)
chr3 (353-401)||(28792068-28792116)
chr3 (369-413)||(45699636-45699680)
[»] chr6 (16 HSPs)
chr6 (311-407)||(22413799-22413895)
chr6 (307-437)||(24644948-24645077)
chr6 (307-420)||(29048084-29048197)
chr6 (309-432)||(14940572-14940695)
chr6 (367-443)||(8064513-8064588)
chr6 (299-342)||(13859473-13859516)
chr6 (350-424)||(9686058-9686132)
chr6 (307-396)||(10590808-10590897)
chr6 (300-416)||(11417005-11417122)
chr6 (363-416)||(19135128-19135181)
chr6 (307-396)||(35040246-35040335)
chr6 (310-377)||(26645439-26645506)
chr6 (310-377)||(26751405-26751472)
chr6 (352-403)||(32190699-32190750)
chr6 (307-397)||(6266861-6266951)
chr6 (299-396)||(10494417-10494514)
[»] chr1 (32 HSPs)
chr1 (367-424)||(6248099-6248156)
chr1 (311-438)||(34914095-34914222)
chr1 (350-432)||(16537837-16537919)
chr1 (299-424)||(35980400-35980520)
chr1 (307-416)||(36203459-36203568)
chr1 (313-412)||(32910389-32910488)
chr1 (309-416)||(47984516-47984623)
chr1 (307-413)||(26345077-26345183)
chr1 (307-416)||(12973517-12973626)
chr1 (299-403)||(17651701-17651805)
chr1 (320-416)||(50153379-50153475)
chr1 (299-418)||(2490042-2490161)
chr1 (351-429)||(9330388-9330466)
chr1 (307-401)||(40095452-40095546)
chr1 (367-424)||(6694376-6694433)
chr1 (299-416)||(8165567-8165684)
chr1 (367-424)||(50952038-50952095)
chr1 (300-396)||(29388983-29389079)
chr1 (349-416)||(11074415-11074482)
chr1 (307-418)||(27507505-27507616)
chr1 (311-413)||(15882177-15882278)
chr1 (384-438)||(52828856-52828910)
chr1 (371-432)||(10847527-10847588)
chr1 (367-416)||(16062880-16062929)
chr1 (307-396)||(16529536-16529625)
chr1 (363-416)||(21685558-21685611)
chr1 (371-416)||(24629964-24630009)
chr1 (309-431)||(27770193-27770320)
chr1 (328-413)||(35375154-35375239)
chr1 (384-432)||(9250099-9250147)
chr1 (350-402)||(9962177-9962229)
chr1 (388-416)||(39158339-39158367)
[»] chr8 (17 HSPs)
chr8 (307-443)||(40436393-40436535)
chr8 (307-416)||(44336729-44336839)
chr8 (307-416)||(24682107-24682215)
chr8 (307-412)||(11218907-11219012)
chr8 (311-424)||(29914598-29914709)
chr8 (382-438)||(12193452-12193508)
chr8 (382-438)||(12437880-12437936)
chr8 (310-424)||(7428441-7428555)
chr8 (307-407)||(22811198-22811298)
chr8 (310-396)||(14549184-14549270)
chr8 (307-377)||(33068223-33068293)
chr8 (307-396)||(10661111-10661200)
chr8 (363-416)||(36340776-36340829)
chr8 (299-396)||(44672738-44672835)
chr8 (372-416)||(9012853-9012897)
chr8 (307-375)||(30254188-30254256)
chr8 (307-347)||(37162724-37162764)
[»] scaffold0204 (1 HSPs)
scaffold0204 (300-416)||(25814-25929)
[»] scaffold0015 (1 HSPs)
scaffold0015 (349-416)||(62399-62466)
[»] scaffold0664 (1 HSPs)
scaffold0664 (409-445)||(6065-6101)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 21238209 - 21237765
Alignment:
Q  10 gcagagaatgacaatgccggttgtagagagaga--aagcgatgaagaagaagaatgaatgagtagggtttgttattttgtagcagaagaaagtgttgaac 107  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21238209 gcagagaatgacaatgccggttgtagagagagagaaagcgatgaagaagaagaatgaatgagtagggtttgttattttgtagcagaagaaagtgttgaac 21238110  T
Q  108 aaaaagagaaaggaaataaatgtgaagtgtgttt-gtatttgctagcttagatgctaagtaaacgtgaaatagaagaaaaggtgatgttgttgttaattt 206  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  21238109 aaaaagagaaaggaaataaatgtgaagtgtgttttgtatttgctagcttagatggtaagtaaacgtgaaatagaagaaaaggtgaagttgttgttaattt 21238010  T
Q  207 gccattgtgtt---tattggttattacgtgaacgccctggcgtacgatggtgtatttcgaatttgaaatttaactagtgcgacgtctagttaggggtttg 303  Q
    ||| |||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21238009 gcccttgtgttgtttattggttattacgtgaatgccctggcgtacgatggtgtatttcgaatttgaaatttaactagtgcgacgtctagttaggggtttg 21237910  T
Q  304 cgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttgg-----tttgatttgattgacttttaaaata 398  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  21237909 tgatgcagtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttggtttgatttgattgacttttaaaata 21237810  T
Q  399 aaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21237809 aaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 21237765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 32942200 - 32942095
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| |||||||||||||||| | |||| ||||  |||||||||||  |||||||||||||||||| | ||||||||||||||| |||| ||| ||    
T  32942200 gtttggttcggttttgaggttaaaagtcatccgaactgcaagataaaaaaacatgcggtttggtttgattcggttgacttttaaaatacaatccgaacca 32942101  T
Q  411 aaccaa 416  Q
    ||||||    
T  32942100 aaccaa 32942095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 446
Target Start/End: Complemental strand, 524948 - 524852
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgcagc 446  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||  || ||||||||| || ||| |||||||  |||| |||||||    
T  524948 aagataaaaaaatatgcggtttggtttgattcgattgacttttaaaataaaatccaaaccaaaccaattcgatttgggttggataggttggtgcagc 524852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 29628065 - 29628201
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| ||||||||||| ||||  ||||| |||   ||| |||||||  |||||||||| |||| || |  ||| |||||||||||||| |||    
T  29628065 tgcggtttggttcggttttgaggtgaaaaggtatccgaaccgcaaggtaaaaaaacatgcggtttgatttggttcggctgaattttaaaataaaatttga 29628164  T
Q  407 atcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||||||| ||||| ||||||| ||||| ||||    
T  29628165 atcaaaccaatgtggtttgggttggatcggttggtgc 29628201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 443
Target Start/End: Complemental strand, 8118403 - 8118269
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaat 408  Q
    ||||||||||  ||||||||| ||||| |||||| |||   |||||||||||  ||| ||||||||||| || | |||| ||| |||||||||||||||     
T  8118403 cggtttggttctgttttgagggtaaaatttatccgaaccgcaagataaaaaagcatgtggtttggtttggttcggttgattttaaaaataaaatctgaac 8118304  T
Q  409 caaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||  |||| ||||||| ||||| ||||    
T  8118303 caaaccaatgttgtttgggttggatcggttagtgc 8118269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 8568679 - 8568583
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatc 403  Q
    |||||||||||| |||||||||||||||| | |||| |||   |||||||| ||  ||||||||||||| | || | ||||||||||||||||||||    
T  8568679 tgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggttcggttcggttgacttttaaaataaaatc 8568583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 26215249 - 26215153
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatc 403  Q
    ||||||||||||||||||||||||||||| | ||||||||   ||||||| |||  || ||| || ||||| || | ||||||||||||||||||||    
T  26215249 tgcggtttggtttggttttgaggttaaaagtcatccaaaccgcaagataataaagcatacgggtttgtttggttcggttgacttttaaaataaaatc 26215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 416
Target Start/End: Original strand, 23729347 - 23729454
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaat 408  Q
    ||||||||||   |||||| | ||||||| |||| |||   |||||||||||  |||||||||||||| | | | ||||||||||||||||||||||||     
T  23729347 cggtttggttcaattttgatgctaaaaatcatccgaaccgcaagataaaaaagcatgcggtttggtttaactcggttgacttttaaaataaaatctgaac 23729446  T
Q  409 caaaccaa 416  Q
    ||||||||    
T  23729447 caaaccaa 23729454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 46147215 - 46147282
Alignment:
Q  349 taagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||| |||||||  |||||| |||||||| |||| |||||||||||||||||||||||| ||||||||    
T  46147215 taaggtaaaaaagcatgcggattggtttggtttggttgacttttaaaataaaatctgaaccaaaccaa 46147282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 30855044 - 30855154
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    |||||||||||||||||||| |||||| | | ||||| | |||||||||| ||||||||||  ||||     |  |||| ||||||||| ||| ||||||    
T  30855044 gtttgcgatgcggtttggttcggttttaaaggtaaaagtcatccaaactacaagataaaaa--aatg-----taatttggtttgattgattttaaaaata 30855136  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||||||||||||||||    
T  30855137 aaatctgaatcaaaccaa 30855154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 11834624 - 11834519
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||| || |  ||||| |||||| ||||| |||||||| ||  ||||||||||||||| ||  ||||| |||||||||| | |||||    
T  11834624 tgcggtttggttcggttgtgtgcctaaaagttatccgaactacaagataaataagtatgcggtttggtttggttcaattgatttttaaaatacagtctga 11834525  T
Q  407 atcaaa 412  Q
    ||||||    
T  11834524 atcaaa 11834519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 443
Target Start/End: Original strand, 20334584 - 20334677
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||| ||  ||||||||||||||| || | |||||||| ||||||||||||||| ||||||| ||| |||| | ||||| ||||| ||||    
T  20334584 aagataaataaatatgcggtttggtttggttcggttgactttaaaaataaaatctgaaccaaaccattgctgtttggattggatcggttagtgc 20334677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 40848808 - 40848913
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||||||| ||||| | || | || | |||| |||||||  || |||||||||||| || | |||||||||||||||||||| ||    
T  40848808 tgcggtttggttcggttttgagggtaaaagtcattcgaattgtaaggtaaaaaaacatacggtttggtttggttcggttgacttttaaaataaaatccga 40848907  T
Q  407 atcaaa 412  Q
    | ||||    
T  40848908 accaaa 40848913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 443
Target Start/End: Complemental strand, 27054865 - 27054721
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| ||||||||||||||||||||||   |||| | ||||||||    ||||||||||  ||||||||||||||| || | |||| ||||||||      
T  27054865 gtttgcggtgcggtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaag 27054766  T
Q  399 aaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
      |||  || |||||||||||||||| | ||||  ||||||||||    
T  27054765 ccatccaaaccaaaccaatgcggtttggattggttcggtttgtgc 27054721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 7685966 - 7685908
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtg 442  Q
    |||| |||||||||||||| |||| |||||||||||||||| ||||||| ||| |||||    
T  7685966 ttgatttttaaaataaaatttgaaccaaaccaatgcggtttgggttggatcggattgtg 7685908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 2409091 - 2409002
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||||  |||||||  ||||| | ||||||||  | ||||||||||  ||||||||||||||||||  ||||| ||||||||    
T  2409091 tgcggtttggtttaattttgagcataaaagtcatccaaaccgtgagataaaaaaccatgcggtttggtttgattcaattgatttttaaaa 2409002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 10338931 - 10338827
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    ||||||||||||||||||| ||||  | |||||||||  || ||||| ||  ||  |||||  |||| || |||||||||||||||||||||||||| ||    
T  10338931 gtttggtttggttttgagggtaaag-tcatccaaactgcaaaataaataagtatttggttttatttggttcgattgacttttaaaataaaatctgaacca 10338833  T
Q  411 aaccaa 416  Q
    ||||||    
T  10338832 aaccaa 10338827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 25007348 - 25007405
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    |||||||||||||| |||| ||||||||| |||||||  || ||||||||||||||||    
T  25007348 ggtttggtttgattcgattaacttttaaactaaaatccaaaccaaaccaatgcggttt 25007405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 34751001 - 34751054
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||| |||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  34751001 atgcgggttggtttggtttggttgatttttaaaataaaatccgaatcaaaccaa 34751054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 43202447 - 43202495
Alignment:
Q  368 gtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||| || | ||||||||||||||| |||||||||||||||||    
T  43202447 gtttggtttggttcggttgacttttaaaatacaatctgaatcaaaccaa 43202495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 31013101 - 31013042
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||||||||||||  || |||| ||||||||||  ||||||| ||||||||||    
T  31013101 ttgacttttaaaataaaatcaaaaccaaatcaatgcggttatggttggatcggtttgtgc 31013042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 13852269 - 13852355
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    ||||||||| |||||||||  ||||| | |||||||||   ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  13852269 ggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 13852355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 23032674 - 23032740
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||  ||| ||||| ||||| || | ||||||||||||||||||| |||| ||||||||    
T  23032674 aagataaaaaagtatgtggtttagtttggttcggttgacttttaaaataaaatttgaaccaaaccaa 23032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 47903200 - 47903294
Alignment:
Q  302 tgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||| |||||||||||| |||||| ||  ||||||| ||||||||    ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  47903200 tgcggtgcggtttggttcggttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 47903294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 416
Target Start/End: Complemental strand, 6880215 - 6880122
Alignment:
Q  323 tttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||||||||||| |||   |||||||  ||  ||| |||||||| || |  ||||||||||||||||||||||  || ||||||||    
T  6880215 tttgaggttaaaaattatccgaacggcaagataagcaaacatggggtttggtatggtacgattgacttttaaaataaaatccaaaccaaaccaa 6880122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 35820156 - 35820103
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||| |||| || | |||||||||||||||||||| ||| ||||||||    
T  35820156 atgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaaccaa 35820103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 48293526 - 48293399
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| |||||||||||||||| | |||| |||   ||| |||||||  ||||||||||||||| || | ||| |||||||||||||||| ||| ||    
T  48293526 gtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaataaaatccgaacca 48293427  T
Q  411 aaccaatgcggtttcggttggaacggtt 438  Q
    |||||||||||||| ||||||| |||||    
T  48293426 aaccaatgcggtttgggttggatcggtt 48293399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 36106545 - 36106435
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcgg-tttggtttgatttgattgacttttaaaataaaatctg 405  Q
    |||||||||||| |||||||||||||||| | |||| |||   |||||||||||  |||||| ||||||||| || | |||||||||||||||||||| |    
T  36106545 tgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaaaaaacatgcggttttggtttggttcggttgacttttaaaataaaatccg 36106446  T
Q  406 aatcaaaccaa 416  Q
    || ||||||||    
T  36106445 aaccaaaccaa 36106435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 5122517 - 5122400
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||||||| |||||||||| ||||| | ||  |||| | |||||||||||  |||||||||| |||| || | |||||||| ||||||    
T  5122517 gtttgcggtgcggtttggttcggttttgagggtaaaagtcatataaaccacaagataaaaaagcatgcggtttgatttggttcggttgactttaaaaata 5122418  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||| ||| ||||||||    
T  5122417 aaatccgaaccaaaccaa 5122400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 20986371 - 20986488
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||||||||||||| || |||||||| | ||||| | ||||||||   |||||||| ||  ||||||||||||||| || | ||||||| |||||||    
T  20986371 gtttgcgatgcggtttgtttcggttttgaagctaaaagtcatccaaaccgcaagataaacaagtatgcggtttggtttggttcggttgacttataaaata 20986470  T
Q  399 aaatctgaatcaaaccaa 416  Q
    |||| |||| ||||||||    
T  20986471 aaatatgaaccaaaccaa 20986488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 438
Target Start/End: Original strand, 45983384 - 45983472
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtt 438  Q
    |||||||||||| |||||||||||||||||| | |||||||| ||||||| |||  || ||||| |||||||||| ||||||| |||||    
T  45983384 aagataaaaaatcatgcggtttggtttgattcggttgactttaaaaataacatccaaaccaaactaatgcggtttgggttggatcggtt 45983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 23450117 - 23449992
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| ||| |||| ||| |||||||||||||||| | |||| ||||  |||||||| ||  ||||||||||||||| || | || ||||||||||||    
T  23450117 gtttgcggtgcagtttagttcggttttgaggttaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaata 23450018  T
Q  399 aaatctgaatcaaaccaatgcggttt 424  Q
     ||||   | ||||||||||||||||    
T  23450017 taatccacaccaaaccaatgcggttt 23449992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 23626022 - 23625917
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||| | |||||| ||||||||| | |||||||  | || ||||||||  ||||||||| ||||| || | |||||||||||||||||||||||||||    
T  23626022 gtttggctcggttttaaggttaaaagtcatccaaatcacaaaataaaaaagtatgcggttttgtttggttcgcttgacttttaaaataaaatctgaatca 23625923  T
Q  411 aaccaa 416  Q
    | ||||    
T  23625922 acccaa 23625917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 48338292 - 48338407
Alignment:
Q  300 tttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataa 399  Q
    |||||| ||| |||||||| |||||| ||||||||| | |||| |||  |||||||||||| | ||| |||||||||| || | ||||||||||||||||    
T  48338292 tttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaaca-tgcagtttggtttggttcggttgacttttaaaataa 48338390  T
Q  400 aatctgaatcaaaccaa 416  Q
    ||||  || ||||||||    
T  48338391 aatccaaaccaaaccaa 48338407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 49640861 - 49640920
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggt 422  Q
    |||||||||| ||||||||| |||||||||||||||||||  ||| ||||||||||||||    
T  49640861 atgcggtttgatttgatttggttgacttttaaaataaaattcgaaccaaaccaatgcggt 49640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 445
Target Start/End: Original strand, 43630535 - 43630673
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| | |||||||  ||||| | ||||||||  | ||||||||||  ||||||||||||||| |||| |||| ||||||||    |||  |    
T  43630535 tgcggtttggttcgattttgagtataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttggtttggttgatttttaaaaagtcatccaa 43630634  T
Q  407 atcaaaccaatgcggtttcggttggaacggtttgtgcag 445  Q
    ||||||||||||||| || | ||||  ||||||||||||    
T  43630635 atcaaaccaatgcggcttggattggttcggtttgtgcag 43630673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 443
Target Start/End: Original strand, 29232714 - 29232846
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| | |||| ||||||||| ||||  ||||||||| ||| | ||   |||||||||||||  || | |||||||||||||||||||| |||  |    
T  29232714 gtttggttcgattttaaggttaaaagttatataaactataatatatataagtttgcggtttggtttagttcggttgacttttaaaataaaatccgaacta 29232813  T
Q  411 aaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||||| ||| | ||||| ||||| ||||    
T  29232814 aaccaatgcgatttggattggatcggttggtgc 29232846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 14866775 - 14866842
Alignment:
Q  348 ataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaacca 415  Q
    |||| ||||||||  ||||||||||||||| ||   ||||||||||||||||||||| ||||||||||    
T  14866775 ataaaataaaaaaacatgcggtttggtttggttcagttgacttttaaaataaaatctaaatcaaacca 14866842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 48602587 - 48602508
Alignment:
Q  364 tgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||||||||| || | |||||||| |||||| ||||  || |||||||||||||||| ||||||| ||||| ||||    
T  48602587 tgcggtttggtttggttcggttgactttgaaaatacaatcctaaccaaaccaatgcggtttgggttggatcggttggtgc 48602508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 416
Target Start/End: Original strand, 28147741 - 28147846
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    ||||| |||||||||||||||||| || |||  |||  ||||||||| ||  | ||||||||||||  |||  ||||||||||||||| |||||||  ||    
T  28147741 gtttgatttggttttgaggttaaacatcatctgaaccgtaagataaataagtaggcggtttggtttagttttgttgacttttaaaatataatctgatcca 28147840  T
Q  411 aaccaa 416  Q
    ||||||    
T  28147841 aaccaa 28147846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 7784544 - 7784488
Alignment:
Q  368 gtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    |||||||||| ||  ||| | |||||||||||||| |||||||||||||||||||||    
T  7784544 gtttggtttggttccattcagttttaaaataaaatatgaatcaaaccaatgcggttt 7784488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 40900208 - 40900138
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttg 377  Q
    |||||||||||| |||||||||  ||||| | |||||||||   ||||||||||  |||||||||||||||    
T  40900208 tgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttg 40900138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 46471438 - 46471492
Alignment:
Q  348 ataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaat 402  Q
    |||||||||||||  || |||||| |||||||| | |||||||||||||||||||    
T  46471438 ataagataaaaaaatatacggtttagtttgattcggttgacttttaaaataaaat 46471492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 52096142 - 52096064
Alignment:
Q  323 tttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaa 401  Q
    ||||||| ||||| |||||||| | |||||||||||||| || || ||| ||||| |||| ||| || |||||||||||    
T  52096142 tttgaggctaaaagttatccaatccataagataaaaaattatacgatttagtttggtttggttgcctattaaaataaaa 52096064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 4642381 - 4642470
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    |||||||||| |||||||||| ||||| |||||| |||   |||||||| ||  |||  ||||| |||| || |||||||||||||||||    
T  4642381 cggtttggttcggttttgaggctaaaagttatccgaaccgcaagataaataagtatgtagtttgatttggttcgattgacttttaaaata 4642470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 5262093 - 5262020
Alignment:
Q  303 gcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggttt 376  Q
    ||||||||||||| || |||||||||  ||||| | ||||||||   |||||||||||  ||||||||||||||    
T  5262093 gcgatgcggtttgattcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggttt 5262020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 10218628 - 10218709
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatt 380  Q
    ||||||| |||| ||||||| |||||||||  ||||| | ||| ||||   |||||||||||  ||||||||||||||||||    
T  10218628 gtttgcggtgcgttttggttcggttttgagcataaaagtcatctaaacctcaagataaaaaagcatgcggtttggtttgatt 10218709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 21068995 - 21069112
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||| ||| | |||||||||||||| | || | ||||  || ||||| ||  |||| |||||||| | |||| ||||||||||||||     
T  21068995 gtttgcggtgcggtttagttcgattttgaggttaaaagtcattcgaactgcaaaataaataaatatgcagtttggttcggtttggttgacttttaaaatt 21069094  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||  ||| ||||||||    
T  21069095 aaattcgaaccaaaccaa 21069112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 23937643 - 23937554
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    ||||||||| ||| ||||||||  ||||| | ||| ||||||  ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  23937643 tgcggtttgatttagttttgagcataaaagtcatctaaactacgagataaaaaaatatgcggtttggtttggttcggttgatttttaaaa 23937554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 26674128 - 26674185
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    ||||| |||||||| | |||| |||||||||||||  || ||||||||||||||||||    
T  26674128 ggtttagtttgattcggttgatttttaaaataaaacatgcatcaaaccaatgcggttt 26674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 32223444 - 32223335
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    ||||||||| || |||||||||||||||| | |||||||    |||||||||||  ||||||||||| ||  ||   || |||||||||| | |||||||    
T  32223444 tgcggtttgattcggttttgaggttaaaagtcatccaaatcgaaagataaaaaagcatgcggtttggatttgttccgtttacttttaaaacacaatctga 32223345  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  32223344 accaaaccaa 32223335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 40494394 - 40494473
Alignment:
Q  320 ggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaa 400  Q
    |||||||||||||||| ||||   |||| ||||||||||||||| | ||||||||||| ||   | |||||||||||||||    
T  40494394 ggttttgaggttaaaagttatatgaactgtaagataaaaaataa-gtggtttggtttggttcagtagacttttaaaataaa 40494473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 416
Target Start/End: Original strand, 42198818 - 42198850
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||||||||||||||| ||||||||    
T  42198818 ttgacttttaaaataaaatctgaaccaaaccaa 42198850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 445
Target Start/End: Original strand, 36567683 - 36567817
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    ||||| ||||||||||||||||||| |||||| |||  |||||| || ||  ||||||||||||| | |||| |||||||||||||||||||   || ||    
T  36567683 gtttgatttggttttgaggttaaaagttatccgaaccgtaagatgaataagtatgcggtttggttcggtttggttgacttttaaaataaaattcaaacca 36567782  T
Q  411 aaccaatgcggtttcggttggaacggtttgtgcag 445  Q
    |||||||||||||| | ||||| ||||| ||||||    
T  36567783 aaccaatgcggtttggattggatcggttggtgcag 36567817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 27572178 - 27572061
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||||||| |||||||||||||||| | |||| |||   ||| |||||||  ||||||||||||||| || | ||| |||||||||||    
T  27572178 gtttgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaata 27572079  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||| ||| ||||||||    
T  27572078 aaatccgaaccaaaccaa 27572061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 2588974 - 2589068
Alignment:
Q  349 taagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||||  ||||||||||||||| |||| ||||||||||||||||| || ||| |||| | ||||||||| ||||||| ||||| ||||    
T  2588974 taagataaaaaaacatgcggtttggtttggtttggttgacttttaaaataaattcagaaccaaatcgatgcggtttgggttggatcggttggtgc 2589068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 1048834 - 1048729
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatc 409  Q
    ||||||||| || ||||||  ||||||| |||||||| |||||||||||||  ||||||||||||||| |  ||||||||||| ||||||||||  || |    
T  1048834 ggtttggttcggctttgagaataaaaatcatccaaac-ataagataaaaaaacatgcggtttggtttggtccgattgacttttgaaataaaatccaaacc 1048736  T
Q  410 aaaccaa 416  Q
    |||||||    
T  1048735 aaaccaa 1048729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 26007508 - 26007393
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||||  ||||  |||||||||||  ||  |||| | |||| |||| || ||||||||||||    
T  26007508 gtttgcggtgcagtttggtttagttttgaggttaaaa-ttatctgaactgcaagataaaaaaacatatggtt-gatttggtttggtttacttttaaaata 26007411  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||||||| ||||||||    
T  26007410 aaatctgaaccaaaccaa 26007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 2422824 - 2422900
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||| |||| ||||||||||||||| |||||| | ||||||||||| |||| | ||||| ||||| ||||    
T  2422824 ggtttggtttggtttggttgacttttaaaatataatctggaccaaaccaatgcagtttagattggatcggttagtgc 2422900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 2797184 - 2797125
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||| |||||||||||||||||||||||| ||||||| | ||||| ||||| ||||    
T  2797184 ttgactttgaaaataaaatctgaatcaaaccaacgcggtttggattggatcggttggtgc 2797125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 443
Target Start/End: Original strand, 36760136 - 36760207
Alignment:
Q  372 ggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||| |||||  |||||| ||||| ||||    
T  36760136 ggtttggttcgattgacttttaaaataaaatccgaaccaaaccaatgtggtttgagttggatcggttggtgc 36760207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 6633341 - 6633386
Alignment:
Q  371 tggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||    
T  6633341 tggtttggtttggttgacttttaaaataaaatctgaaccaaaccaa 6633386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 30265916 - 30265827
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    ||||||||||||||||||||||  ||||||| ||| ||||   |||||||||||  |||| |||||||||| || | |||| ||||||||    
T  30265916 tgcggtttggtttggttttgagcataaaaatcatctaaaccgcaagataaaaaaacatgcagtttggtttggttcggttgatttttaaaa 30265827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 35240949 - 35240840
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| | |||||||| ||||| | |||| |||  |||| | |||||  |||||||||| |||| || | |||||||| ||||||||||| ||    
T  35240949 tgcggtttggttcgattttgaggctaaaattcatccgaaccgtaagctgaaaaagtatgcggtttgatttggttcggttgactttaaaaataaaatccga 35240850  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  35240849 accaaaccaa 35240840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 40692445 - 40692560
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||| |||| || |||||||||| || || | || ||||||  ||||||||||  | |||| ||||||||| || | |||||||||||||||    
T  40692445 gtttgcggtgcgatttgattcggttttgaggctagaagtcattcaaactgcaagataaaaagca-tgcgatttggtttggttcggttgacttttaaaata 40692543  T
Q  399 aaatctgaatcaaaccaa 416  Q
    |||| |||||||||||||    
T  40692544 aaat-tgaatcaaaccaa 40692560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 2803346 - 2803287
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    |||||||| |||||||||| ||||||||||||| ||||||| | ||||| ||||| ||||    
T  2803346 ttgactttgaaaataaaatatgaatcaaaccaacgcggtttggattggatcggttggtgc 2803287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 18432049 - 18432134
Alignment:
Q  320 ggttttgaggttaaaaattatccaaactataagataaaaaata--atgcggtttggtttgatttgattgacttttaaaataaaatc 403  Q
    |||||| ||||||||| | |||| |||| |||||||||||| |  ||| ||||| |||| ||| | ||||||||||||||||||||    
T  18432049 ggtttttaggttaaaagtcatccgaactgtaagataaaaaaaaacatggggttttgtttaattcggttgacttttaaaataaaatc 18432134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 14652434 - 14652519
Alignment:
Q  331 taaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||| || | ||| |||||||||||||  ||||| |||| |||| ||   |||||||| ||||||||||||||| ||||||||    
T  14652434 taaaaatcattcgaaccataagataaaaaaacatgcgatttgatttggttcagttgactttaaaaataaaatctgaaccaaaccaa 14652519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 17132159 - 17132106
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||| |||| || | |||||||||||||||||||| ||| ||||||||    
T  17132159 atgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaaccaa 17132106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 22747642 - 22747589
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||| |||| || ||||||||||||||||||||| ||||  |||||||    
T  22747642 atgcggtttgatttggttcgattgacttttaaaataaaatttgaacaaaaccaa 22747589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 41454881 - 41454930
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||| | || | |||||||||||||||||||||||| ||||||||    
T  41454881 ggtttggttcggttcggttgacttttaaaataaaatctgaaccaaaccaa 41454930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 1681086 - 1681150
Alignment:
Q  313 ttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttg 377  Q
    |||||| |||||||||||||||||| |||| || || ||||||| |||| ||| ||||| |||||    
T  1681086 ttggttcggttttgaggttaaaaatcatccgaattacaagataagaaattatgtggtttagtttg 1681150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 35726981 - 35727041
Alignment:
Q  365 gcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttc 425  Q
    ||||||||||||  |||| ||||| | ||||||| |||||||| |||||||||| ||||||    
T  35726981 gcggtttggttttgtttggttgacctctaaaatacaatctgaaccaaaccaatgtggtttc 35727041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 423
Target Start/End: Complemental strand, 12041722 - 12041598
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| || ||||||||| |||||||||| ||||| | |||  |||  ||||||||||||  |||||||||| |||| || | |||||||||||||||    
T  12041722 gtttgcggtgtggtttggttcggttttgaggctaaaagtcatctgaaccgtaagataaaaaaacatgcggtttgatttggttcggttgacttttaaaata 12041623  T
Q  399 aaatctgaatcaaaccaatgcggtt 423  Q
    ||||| ||| |||||||||||||||    
T  12041622 aaatccgaaccaaaccaatgcggtt 12041598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 44085503 - 44085583
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  44085503 atgcggtttggtttggttcggttgactttaaaaataaaatctgaatcaaaccaatgcggtttgggttggatcggttggtgc 44085583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 27301566 - 27301500
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||  |||||||||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  27301566 aagataaaaaagcatgcggtttggtttgattcggttgacttttaaaataaaatttgaaccaaaccaa 27301500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 432
Target Start/End: Original strand, 1330959 - 1331092
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||||||||||||| || |||||| ||   |||||| |||| ||| | ||| |||||||  |||| | |||||||| || | |||||||||||||||    
T  1330959 gtttgcgatgcggtttgattcggttttaagacgaaaaatcatccgaaccacaaggtaaaaaagcatgcagattggtttggttcggttgacttttaaaata 1331058  T
Q  399 aaatctgaatcaaaccaatgcggtttcggttgga 432  Q
    |||||  || |||||||||| ||||| |||||||    
T  1331059 aaatccaaaccaaaccaatgtggtttgggttgga 1331092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 5862756 - 5862647
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    ||||||||| |||| |||||||| ||||| | ||| |||    || ||||||||  ||||||||||||||| || | |||||||||||||||||||| ||    
T  5862756 tgcggtttgatttgattttgagggtaaaagtcatctaaatcgcaaaataaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaatccga 5862657  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  5862656 accaaaccaa 5862647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 17762702 - 17762804
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatc 409  Q
    ||||| |||||||||||||| ||||| | | || |||    ||||||||||  ||||||||||||||| || | |||||||||||||||||||| ||| |    
T  17762702 ggttttgtttggttttgaggctaaaagtcaaccgaaccgcgagataaaaaaacatgcggtttggtttggttcggttgacttttaaaataaaatccgaacc 17762801  T
Q  410 aaa 412  Q
    |||    
T  17762802 aaa 17762804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Complemental strand, 33426609 - 33426539
Alignment:
Q  354 taaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    ||||||||||||| |||||||||||||  ||||| ||||||||||||| | |||  ||||||| |||||||    
T  33426609 taaaaaataatgcagtttggtttgattcaattgatttttaaaataaaaacggaacaaaaccaacgcggttt 33426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 17916976 - 17916887
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||| |||||||  ||||||||  ||||| ||||||||||| | ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  17916976 tgcgatttggttcagttttgagcataaaagttatccaaactttgagataaaaaaacatgcggtttggtttggttcggttgatttttaaaa 17916887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 28790463 - 28790572
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    ||||||||||||  ||||||| ||||||| | |||  |||   |||||||||||  |||||||||| || |||| | ||||||||||||||||||||  |    
T  28790463 tgcggtttggttcagttttgatgttaaaagtcatctgaaccgcaagataaaaaagcatgcggtttgattagattcggttgacttttaaaataaaatccaa 28790562  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  28790563 accaaaccaa 28790572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 402
Target Start/End: Original strand, 12884480 - 12884578
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||||||| | |||| ||||||||| | |||||||||  | | |||||||  |||||||||||     |||| |||||||||||||||    
T  12884480 gtttgcggtgcggtttggttcgattttaaggttaaaagtcatccaaactgcatggtaaaaaagtatgcggtttgg-----tttggttgacttttaaaata 12884574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 30759727 - 30759664
Alignment:
Q  353 ataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||  |||| ||||||||||||| | ||| ||||||||||||||| |||| ||||||||    
T  30759727 ataaaaaagcatgcagtttggtttgattcggttggcttttaaaataaaatttgaaccaaaccaa 30759664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 13193898 - 13193992
Alignment:
Q  349 taagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctg-----aatcaaaccaatgcggtttcggttggaacggtt 438  Q
    ||||||||||||  || | |||||||||| || | |||||||||||||||||||| |     |||||||||||||| |||| ||||||| |||||    
T  13193898 taagataaaaaagcatactgtttggtttggttcggttgacttttaaaataaaatccgaaccaaatcaaaccaatgcagtttgggttggatcggtt 13193992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 41461086 - 41461148
Alignment:
Q  354 taaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||  ||||||||||||||| || | |||||||||||||||||||  ||| ||||||||    
T  41461086 taaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaattcgaaccaaaccaa 41461148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 36500712 - 36500619
Alignment:
Q  357 aaaataatgcggtttggtttgatttgattgacttttaaaataaaat-----ctgaatcaaaccaatgcggtttcggttggaacggtttgtgcag 445  Q
    ||||| || ||||||| |||| |||||||||||||||||||| |||     | ||| ||||||| |||||||| ||||||| ||||| ||||||    
T  36500712 aaaatcattcggtttgatttgctttgattgacttttaaaatacaatatgaaccgaaccaaaccattgcggtttgggttggatcggttggtgcag 36500619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 44979894 - 44979805
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||| |||||||||  ||||| | ||||||||    ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  44979894 tgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 44979805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 30761838 - 30761786
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaat 402  Q
    |||||||||||  |||||||||| |||||||   |||||||||||||||||||    
T  30761838 aagataaaaaaacatgcggtttgttttgattatgttgacttttaaaataaaat 30761786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 55467775 - 55467645
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||||||| |||||||||| ||||| | |||| ||||  |||||||| ||  ||||||||||||||| || | |||||||||||||||    
T  55467775 gtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttttaaaata 55467676  T
Q  399 aaatctg-----aatcaaaccaatgcggttt 424  Q
    ||||| |     |||||||||||||||||||    
T  55467675 aaatccgaaccaaatcaaaccaatgcggttt 55467645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 54121970 - 54122087
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| ||| ||||| || | |||||||||||||| | |||| |||  ||||||||||||  ||||||||||||||| || | |||||||||||||||    
T  54121970 gtttgcggtgcagtttgattcgattttgaggttaaaagtcatccgaaccgtaagataaaaaagtatgcggtttggtttggttcggttgacttttaaaata 54122069  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||| ||| ||||||||    
T  54122070 aaatccgaaccaaaccaa 54122087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 416
Target Start/End: Complemental strand, 8558082 - 8557974
Alignment:
Q  308 gcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaa 407  Q
    |||||||||||||||||||||| ||||| | | || ||||  |||||||||||   |||||||||||| | ||||||||||||| ||||||||||| |||    
T  8558082 gcggtttggtttggttttgagggtaaaagtcacccgaactgcaagataaaaaagcttgcggtttggttcggtttgattgactttaaaaataaaatccgaa 8557983  T
Q  408 tcaaaccaa 416  Q
     ||||||||    
T  8557982 ccaaaccaa 8557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 2832521 - 2832410
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgattt-----gattgacttttaaaataaaatct 404  Q
    |||||||||||||||||||| ||||| | |||| ||| | |||||||||||  ||||||||||||||| |||     | ||||||||||||||||||||     
T  2832521 ggtttggtttggttttgaggctaaaagtcatccgaaccacaagataaaaaagcatgcggtttggtttggtttggttcggttgacttttaaaataaaatcc 2832422  T
Q  405 gaatcaaaccaa 416  Q
    ||||||||||||    
T  2832421 gaatcaaaccaa 2832410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 307 - 438
Target Start/End: Complemental strand, 38652113 - 38651983
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    ||||||||||||||||||||| | ||||| | |||| ||    ||||||||||||| |||||||||||||| || | |||||||| ||||||| |||  |    
T  38652113 tgcggtttggtttggttttgaaggtaaaagtcatccgaatcgcaagataaaaaata-tgcggtttggtttggttcggttgactttaaaaataatatccaa 38652015  T
Q  407 atcaaaccaatgcggtttcggttggaacggtt 438  Q
    | ||||| |||||||||| ||||||| |||||    
T  38652014 accaaactaatgcggtttgggttggatcggtt 38651983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 17144854 - 17144746
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||||||| ||||| | ||||||||   |||||||||| || ||||| |||||||| || | ||||||||||||||| |||| ||    
T  17144854 tgcggtttggttcggttttgaggctaaaagtcatccaaaccgcaagataaaaagta-tgcggattggtttggttcggttgacttttaaaatagaatccga 17144756  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  17144755 agcaaaccaa 17144746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 432
Target Start/End: Original strand, 52631997 - 52632121
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaact-ataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaa 407  Q
    |||||||||| | |||| ||| ||||| | ||||||||  | |||||||||||  | |||||||||||||||| | || |||||||||||| |||| |||    
T  52631997 cggtttggttcgtttttaaggctaaaagtcatccaaacagacaagataaaaaaacacgcggtttggtttgattcggttaacttttaaaatacaatccgaa 52632096  T
Q  408 tcaaaccaatgcggtttcggttgga 432  Q
     ||||||||||| |||| |||||||    
T  52632097 ccaaaccaatgcagtttgggttgga 52632121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 26292081 - 26291972
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| | |||| |  |||||||| ||||||||   ||||||||||||  ||||||||| |||| || | |||| |||||||||| |||||||    
T  26292081 tgcggtttggttcgattttaaaattaaaaatcatccaaaccgcaagataaaaaattgtgcggtttgctttggttcggttgatttttaaaatagaatctga 26291982  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  26291981 accaaaccaa 26291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 42363350 - 42363241
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||||||| ||||| | ||   |||   |||||||||||| ||||||||||||||| || | |||||||| |||| |||||| ||    
T  42363350 tgcggtttggttcggttttgagggtaaaagtaatttgaaccgcaagataaaaaatcatgcggtttggtttggttcggttgactttaaaaacaaaatccga 42363251  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  42363250 accaaaccaa 42363241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 44650967 - 44651031
Alignment:
Q  353 ataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaat 417  Q
    ||||||||  ||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||    
T  44650967 ataaaaaaacatgcggtttggtttggtttggttgactttaaaaataaaatccgaaccaaaccaat 44651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 6004520 - 6004423
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||||||||||| |||||| ||  ||||| | ||||||||    ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  6004520 gtttgcgatgcggtttggttcggttttcagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 6004423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 10481766 - 10481661
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| |||||||||| ||||| | ||   ||| | ||||||||||   | || |||||||||| || | ||||||||||||||||||| |||||||    
T  10481766 gtttggttcggttttgaggataaaagtcattggaaccacaagataaaaagacacgcagtttggtttggttcggttgacttttaaaataaaatttgaatca 10481667  T
Q  411 aaccaa 416  Q
    ||||||    
T  10481666 aaccaa 10481661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 25465821 - 25465866
Alignment:
Q  371 tggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  25465821 tggtttggtttgattgacttttaaaataaaatccgaaccaaaccaa 25465866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 26758186 - 26758290
Alignment:
Q  312 tttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaa 411  Q
    ||||||| |||||| ||||||||| | |||| |||   |||||||| ||  || |||||||||||| || | ||||||||||||||||| |||||  |||    
T  26758186 tttggttcggttttaaggttaaaagtcatccgaaccgcaagataaataagtatacggtttggtttggttcggttgacttttaaaataaagtctgatccaa 26758285  T
Q  412 accaa 416  Q
    |||||    
T  26758286 accaa 26758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 21238043 - 21238116
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    ||||||||||| ||| |||||||||||| |||  |||||||||||||| ||| |  ||||||| |||||||||||    
T  21238043 aagataaaaaaaaat-cggtttggtttggtttatttgacttttaaaatgaaaaccaaatcaaatcaatgcggttt 21238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 45629153 - 45629243
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaa 400  Q
    |||||| || |||||| ||||||||| | |||| |||   |||||||| ||  ||||  |||||||||||||| |||||||||||||||||    
T  45629153 ggtttgattcggttttaaggttaaaagtcatccgaaccgcaagataaataagtatgcaatttggtttgatttggttgacttttaaaataaa 45629243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 28792068 - 28792116
Alignment:
Q  353 ataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaa 401  Q
    ||||||||  || ||||||| ||| ||||||||||||||||||||||||    
T  28792068 ataaaaaaacatacggtttgatttaatttgattgacttttaaaataaaa 28792116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 45699636 - 45699680
Alignment:
Q  369 tttggtttgatttgattgacttttaaaataaaatctgaatcaaac 413  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||    
T  45699636 tttggttttgttcgattgacttttaaaataaaatttgaatcaaac 45699680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 22413799 - 22413895
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaa 407  Q
    ||||| ||||||||||||||||||| | |||| ||| | |||||||| ||  ||||||||||||||| || | ||||||||||||||||||||||||    
T  22413799 gtttgatttggttttgaggttaaaagtcatccgaaccagaagataaataagtatgcggtttggtttggttcggttgacttttaaaataaaatctgaa 22413895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 437
Target Start/End: Complemental strand, 24645077 - 24644948
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| | |||||||||||||| | |||| |||   |||||||| ||  |||||||||||||||||| | ||||||||||||||||||||  |    
T  24645077 tgcggtttggttcgattttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggtttgattcg-ttgacttttaaaataaaatccaa 24644979  T
Q  407 atcaaaccaatgcggtttcggttggaacggt 437  Q
    | ||||||||||| |||| | ||||| ||||    
T  24644978 accaaaccaatgcagtttggattggatcggt 24644948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 420
Target Start/End: Original strand, 29048084 - 29048197
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||| ||||||||| | |||||||| ||||| ||||||    |||| ||||||||| || | |||||||||||||||||||| ||    
T  29048084 tgcggtttggttcggttttaaggttaaaagtcatccaaaccataaggtaaaaaggtgtgcgatttggtttggttcggttgacttttaaaataaaatccga 29048183  T
Q  407 atcaaaccaatgcg 420  Q
    |  |||||||||||    
T  29048184 actaaaccaatgcg 29048197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 14940695 - 14940572
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaat 408  Q
    ||||||| || |||||| ||||||||  |||||| |||   |||||||||||  |||| |||||||||| || | ||||||||| |||||||||| |||     
T  14940695 cggtttgattcggttttaaggttaaaggttatccgaaccgcaagataaaaaaacatgcagtttggtttggttcggttgactttttaaataaaatccgaac 14940596  T
Q  409 caaaccaatgcggtttcggttgga 432  Q
    |||||||| ||||||| |||||||    
T  14940595 caaaccaacgcggtttgggttgga 14940572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 8064513 - 8064588
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| | ||||| ||||    
T  8064513 ggtttggtttggtttgattgacttttaaaataaaatc-gaaccaaaccgatgcggtttgggttgaatcggttggtgc 8064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 13859516 - 13859473
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatcc 342  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  13859516 gtttgcgatgcggtttggtttgattttgaggttaaaaattatcc 13859473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 9686058 - 9686132
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    |||||||| ||  ||||||||||||||| || | || ||||||||||||||||| ||| ||||||||||||||||    
T  9686058 aagataaataagtatgcggtttggtttggttcggttaacttttaaaataaaatccgaaccaaaccaatgcggttt 9686132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 10590808 - 10590897
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||| |||||||||  ||||| | |||||||||   ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  10590808 tgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 10590897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 11417005 - 11417122
Alignment:
Q  300 tttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagat-aaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    |||||| |||||||||||| | |||| ||| ||||| | |||| |||  |||| | ||||||  |||| ||||| |||| ||||||||||||||||||||    
T  11417005 tttgcggtgcggtttggttcgatttttaggctaaaattcatccgaaccgtaagctgaaaaaagtatgctgtttgatttggtttgattgacttttaaaata 11417104  T
Q  399 aaatctgaatcaaaccaa 416  Q
    |||||  || ||||||||    
T  11417105 aaatccaaaccaaaccaa 11417122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 19135181 - 19135128
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||||||||| || | ||||||||||||||||||| |||| ||||||||    
T  19135181 atgcggtttggtttggttcggttgacttttaaaataaaatatgaaccaaaccaa 19135128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 35040335 - 35040246
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||| |||||||||  ||||| | ||||||||    ||||||||||  ||||||||||||||| |||| |||| ||||||||    
T  35040335 tgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtttggttgatttttaaaa 35040246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 26645506 - 26645439
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttg 377  Q
    ||||| |||||||||||||||||||| | |||| |||  |||| |||||||  |||||||||||||||    
T  26645506 ggtttagtttggttttgaggttaaaagtcatccgaaccgtaaggtaaaaaaatatgcggtttggtttg 26645439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 26751472 - 26751405
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttg 377  Q
    ||||| |||||||||||||||||||| | |||| |||  |||| |||||||  |||||||||||||||    
T  26751472 ggtttagtttggttttgaggttaaaagtcatccgaaccgtaaggtaaaaaaatatgcggtttggtttg 26751405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 32190750 - 32190699
Alignment:
Q  352 gataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatc 403  Q
    |||||||||  ||| |||||||||||||||| || |||||||||||||||||    
T  32190750 gataaaaaaacatgaggtttggtttgatttggttaacttttaaaataaaatc 32190699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 397
Target Start/End: Original strand, 6266861 - 6266951
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaat 397  Q
    |||||||||||  |||||||||||||| | | |||| |||  ||| ||||||||  ||||||||||||||| |  | ||||||||||||||    
T  6266861 tgcggtttggtacggttttgaggttaatagtcatccgaaccgtaaaataaaaaaacatgcggtttggtttggtacggttgacttttaaaat 6266951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 10494514 - 10494417
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    ||||||| ||||||||||||||||||||||  ||||| | ||||||||    ||||||||||  ||| |||||| |||| || | |||| ||||||||    
T  10494514 gtttgcggtgcggtttggtttggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatggggtttgatttggttcggttgatttttaaaa 10494417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 6248099 - 6248156
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  6248099 ggtttggtttggtttggttgacttttaaaataaaatttgaatcaaaccaatgcggttt 6248156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 34914095 - 34914222
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| | ||||||||| |||| | |||||||||   | ||||||||  |||| |||||||||| |||| |||||||||||||||||||  ||| ||    
T  34914095 gtttggttcgattttgaggtgaaaagtcatccaaactgcgaaataaaaaagtatgcagtttggtttgctttggttgacttttaaaataaaattcgaacca 34914194  T
Q  411 aaccaatgcggtttcggttggaacggtt 438  Q
    |||||||| ||||| | ||||| |||||    
T  34914195 aaccaatgtggtttggattggatcggtt 34914222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 16537919 - 16537837
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttgga 432  Q
    |||||||||||  |||||||||| |||| |||| || ||||||||||||||||| ||| ||||||||||| |||| |||||||    
T  16537919 aagataaaaaaacatgcggtttgatttggtttggttcacttttaaaataaaatccgaaccaaaccaatgcagtttgggttgga 16537837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 35980520 - 35980400
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||||||| |||||||||| ||||| | |||| |||   ||| |||||||  ||| ||||||||||  || |||||||||||||||||    
T  35980520 gtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgttcgattgacttttaaaata 35980421  T
Q  399 aaatctgaatcaaaccaatgcggttt 424  Q
    |||||     ||||||||||||||||    
T  35980420 aaatc-----caaaccaatgcggttt 35980400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 36203568 - 36203459
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||| ||||||| |||||||||||||||| | ||||||||   |||||||||||  |||||||||| |||| || | ||||||||||||||| |||| ||    
T  36203568 tgcgatttggttcggttttgaggttaaaagtcatccaaaccgcaagataaaaaagcatgcggtttgatttggttcggttgacttttaaaatacaatccga 36203469  T
Q  407 atcaaaccaa 416  Q
    | | ||||||    
T  36203468 accgaaccaa 36203459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 412
Target Start/End: Complemental strand, 32910488 - 32910389
Alignment:
Q  313 ttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaa 412  Q
    |||||| |||||||||| ||||| | |||||||||  |||||||||||  |||| |||||||||| || | |||||||| |||||| |||||||| ||||    
T  32910488 ttggttcggttttgaggataaaagtcatccaaactgcaagataaaaaaacatgcagtttggtttggttcggttgactttaaaaatagaatctgaaccaaa 32910389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 416
Target Start/End: Complemental strand, 47984623 - 47984516
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaat 408  Q
    |||||||||| |||||||||  ||||| | || |||| |  |||||||||||  |||| ||||| |||| ||||| |||||||||||||||||| ||||     
T  47984623 cggtttggttcggttttgagactaaaagtcattcaaattgcaagataaaaaaacatgcagtttgatttggtttgactgacttttaaaataaaatatgaac 47984524  T
Q  409 caaaccaa 416  Q
    ||||||||    
T  47984523 caaaccaa 47984516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 26345183 - 26345077
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||| |||  |||||||||||| || | |||| ||| | || ||||||||  ||||||||| |||||||| | |||||||||||||||||||| ||    
T  26345183 tgcggtttagttccgttttgaggttagaagtcatccgaaccaaaaaataaaaaagtatgcggtttagtttgattcggttgacttttaaaataaaatccga 26345084  T
Q  407 atcaaac 413  Q
    | |||||    
T  26345083 accaaac 26345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 12973517 - 12973626
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||||| | | ||| | |||| |||   |||||||| ||  ||||||||||||||| |||| |||| ||| ||||||||||| ||    
T  12973517 tgcggtttggttcggttttgaagctgaaagtcatccgaaccgcaagataaataaatatgcggtttggtttggtttggttgattttgaaaataaaatccga 12973616  T
Q  407 atcaaaccaa 416  Q
    ||||||||||    
T  12973617 atcaaaccaa 12973626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 17651701 - 17651805
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||||||||||||| || |||||||||| ||||| | || | || | |||| |||||||  |||||||||| |||  || | |||||||||||||||    
T  17651701 gtttgcgatgcggtttgattcggttttgaggctaaaagtcattcgaattgtaaggtaaaaaagcatgcggtttgattttgttcggttgacttttaaaata 17651800  T
Q  399 aaatc 403  Q
    |||||    
T  17651801 aaatc 17651805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 416
Target Start/End: Original strand, 50153379 - 50153475
Alignment:
Q  320 ggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||||||| |||||  ||||  |||||||||||  ||| |||||| |||  || | |||||||||||||||||||| ||| ||||||||    
T  50153379 ggttttgaggttaaaagttatctgaactgcaagataaaaaaatatgtggtttgattttgttcggttgacttttaaaataaaatccgaaccaaaccaa 50153475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 2490161 - 2490042
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| ||| |||||||| | |||||||| ||||| |||||| |||   |||||||| ||  ||||| ||||||||| ||   |||||||||||||||    
T  2490161 gtttgcggtgcagtttggttcgattttgaggctaaaagttatccgaaccgcaagataaataagtatgcgatttggtttggttcagttgacttttaaaata 2490062  T
Q  399 aaatctgaatcaaaccaatg 418  Q
    ||||  ||| ||||||||||    
T  2490061 aaattcgaaccaaaccaatg 2490042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 9330388 - 9330466
Alignment:
Q  351 agataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggtt 429  Q
    ||||||||||  ||| ||||||||||  || | ||||||||||||||| | |||||||||||||||||| |||| ||||    
T  9330388 agataaaaaagtatgtggtttggtttagttcggttgacttttaaaatacattctgaatcaaaccaatgcagtttgggtt 9330466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 401
Target Start/End: Complemental strand, 40095546 - 40095452
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaa 401  Q
    |||||||||||| |||||||||||||||| |||||| |||   |||||||| ||  ||||||||||| ||| || | || | |||||||||||||    
T  40095546 tgcggtttggttcggttttgaggttaaaagttatccgaaccgcaagataaataaatatgcggtttggcttgtttcggtttatttttaaaataaaa 40095452  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 6694433 - 6694376
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    |||||| |||| || | ||||||||||||||||||| |||| ||||||||||||||||    
T  6694433 ggtttgttttgtttaggttgacttttaaaataaaatttgaaccaaaccaatgcggttt 6694376  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 416
Target Start/End: Complemental strand, 8165684 - 8165567
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaata 398  Q
    ||||||| |||||||| |||  ||||||| | ||||||| |||| |||   | |||||| ||  ||||||||||||| | || | |||||||| ||||||    
T  8165684 gtttgcggtgcggtttagttcagttttgaaggtaaaaatcatccgaaccgcaggataaagaagcatgcggtttggttcggttcggttgactttaaaaata 8165585  T
Q  399 aaatctgaatcaaaccaa 416  Q
    ||||||||| ||||||||    
T  8165584 aaatctgaaccaaaccaa 8165567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 50952095 - 50952038
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggttt 424  Q
    ||||||||||| || | |||||||||||||||||| | ||||||||||| ||||||||    
T  50952095 ggtttggtttggttcggttgacttttaaaataaaacccgaatcaaaccattgcggttt 50952038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 29388983 - 29389079
Alignment:
Q  300 tttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||| |||||||||||| | |||||||   |||| | ||||||||  | ||||||||||  |||||||||| |||| ||||||||| ||||||||    
T  29388983 tttgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgtgagataaaaaagcatgcggtttgatttggtttgattgatttttaaaa 29389079  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 11074482 - 11074415
Alignment:
Q  349 taagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||||||  || |||||||||||| || | |||||||| ||||||||||||||| | ||||||    
T  11074482 taagataaaaaaacatacggtttggtttggttcggttgactttaaaaataaaatctgaacctaaccaa 11074415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 27507616 - 27507505
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| |||||||||  ||||| | |||| |||   |||||||| ||  ||||  ||||||||  || | ||||||||||||||||||||  |    
T  27507616 tgcggtttggttcggttttgagaataaaagtcatccgaaccgcaagataaataagtatgcaatttggtttagttcggttgacttttaaaataaaatccaa 27507517  T
Q  407 atcaaaccaatg 418  Q
    ||||||||||||    
T  27507516 atcaaaccaatg 27507505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 15882278 - 15882177
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    ||||||||| || |||| ||||||| | || ||||||  |||||||||||  |||  |||| ||||| ||||||||| ||||||||| ||||| ||||||    
T  15882278 gtttggtttagtgttgatgttaaaagtaattcaaactgcaagataaaaaaatatgtagtttagtttggtttgattgatttttaaaat-aaatccgaatca 15882180  T
Q  411 aac 413  Q
    |||    
T  15882179 aac 15882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 52828856 - 52828910
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtt 438  Q
    |||||||||||||||||||||||| |||||||| ||| |||  |||||| |||||    
T  52828856 ttgacttttaaaataaaatctgaaccaaaccaacgcgatttgagttggatcggtt 52828910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 10847588 - 10847527
Alignment:
Q  371 tggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttgga 432  Q
    ||||||| || | |||||||| ||||||||||| ||| |||||||||| ||||| |||||||    
T  10847588 tggtttggttcggttgactttgaaaataaaatcagaaccaaaccaatgtggtttgggttgga 10847527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 16062880 - 16062929
Alignment:
Q  367 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||||||||   |||||||||||||||||||  ||||||||||||    
T  16062880 ggtttggtttgattcagttgacttttaaaataaaattcgaatcaaaccaa 16062929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 16529625 - 16529536
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||| |||||||||  ||||| | |||||||||   ||||||||||  |||| |||||||||| || | |||| ||||||||    
T  16529625 tgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgccgtttggtttggttcggttgatttttaaaa 16529536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 21685611 - 21685558
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||||||||||| ||   |||||||||||||||||||| ||| ||||||||    
T  21685611 atgcggtttggtttggttcagttgacttttaaaataaaatcagaaccaaaccaa 21685558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 24629964 - 24630009
Alignment:
Q  371 tggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    ||||||| |||| ||||||||||||||||||||| || ||||||||    
T  24629964 tggtttggtttggttgacttttaaaataaaatcttaaccaaaccaa 24630009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 431
Target Start/End: Complemental strand, 27770320 - 27770193
Alignment:
Q  309 cggtttggtttggttttgaggttaaaaattatccaaactataa------gataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaat 402  Q
    |||||| |||||||||| |||||||||||||||  ||  ||||      |||||||||  |||||||||| |||| || |||| |||||||||||||||     
T  27770320 cggtttagtttggttttaaggttaaaaattatcataatcataatcatgagataaaaaaatatgcggtttg-tttggttcgattaacttttaaaataaaaa 27770222  T
Q  403 ctgaatcaaaccaatgcggtttcggttgg 431  Q
      ||| |||||||||| ||||| ||||||    
T  27770221 tcgaaccaaaccaatgtggtttaggttgg 27770193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 35375154 - 35375239
Alignment:
Q  328 ggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaac 413  Q
    |||||||| |||| | |||  |||||| |||||  ||||||| | ||||| |||| |||||||||||||||||||| ||| |||||    
T  35375154 ggttaaaagttattcgaaccgtaagattaaaaagcatgcggtatagtttggtttgtttgacttttaaaataaaatccgaaccaaac 35375239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 9250147 - 9250099
Alignment:
Q  384 ttgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttgga 432  Q
    ||||||||||||||| ||| |||||||||| ||||| |||| |||||||    
T  9250147 ttgacttttaaaatacaatttgaatcaaactaatgcagtttgggttgga 9250099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 9962229 - 9962177
Alignment:
Q  350 aagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaat 402  Q
    |||||||||||  | ||||||| |||||||||| ||||||||| |||||||||    
T  9962229 aagataaaaaaacaggcggttttgtttgatttggttgacttttcaaataaaat 9962177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 416
Target Start/End: Complemental strand, 39158367 - 39158339
Alignment:
Q  388 cttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||||||||||||||||||||||    
T  39158367 cttttaaaataaaatctgaatcaaaccaa 39158339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 40436393 - 40436535
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaata-atgcggtttggtttgatttgattgacttttaaaataaaat--- 402  Q
    |||||||||||| |||||||||| ||||| | ||||||| |  ||||||||||| | |||| |||||||||| || | |||||||| ||||||||||       
T  40436393 tgcggtttggttcggttttgagggtaaaagtgatccaaattgcaagataaaaaaaacatgccgtttggtttggttcggttgactttaaaaataaaatttg 40436492  T
Q  403 --ctgaatcaaaccaatgcggtttcggttggaacggtttgtgc 443  Q
      | ||| |||||||||||||||| ||||||| ||||| ||||    
T  40436493 aaccgaaccaaaccaatgcggtttgggttggatcggttggtgc 40436535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 44336729 - 44336839
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaata-atgcggtttggtttgatttgattgacttttaaaataaaatctg 405  Q
    |||||||||||| ||||||||| |||||| | |||| |||   ||||||||||| | ||||||||||||||| || | ||||||||||||||| |||| |    
T  44336729 tgcggtttggttcggttttgagtttaaaagtcatccgaaccgcaagataaaaaaaacatgcggtttggtttggttcggttgacttttaaaatacaatccg 44336828  T
Q  406 aatcaaaccaa 416  Q
    || ||||||||    
T  44336829 aaccaaaccaa 44336839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 24682215 - 24682107
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    ||||| |||||| |||||||||| ||||| | |||| |||   |||||||| ||  |||| ||||||||||||| |||||||||||||||||||||| ||    
T  24682215 tgcggcttggttcggttttgaggctaaaattcatccgaaccgcaagataaataagtatgcagtttggtttgattcgattgacttttaaaataaaatc-ga 24682117  T
Q  407 atcaaaccaa 416  Q
    | ||||||||    
T  24682116 accaaaccaa 24682107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 11218907 - 11219012
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||| | |||||||| ||||| | |||| ||    |||||||| ||  ||||| ||||||||| |||| ||||||||||||||||| |||||    
T  11218907 tgcggtttggttcgattttgaggctaaaagtcatccgaaacgcaagataaataagtatgcgatttggtttggtttggttgacttttaaaataaagtctga 11219006  T
Q  407 atcaaa 412  Q
    ||||||    
T  11219007 atcaaa 11219012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 424
Target Start/End: Complemental strand, 29914709 - 29914598
Alignment:
Q  311 gtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatca 410  Q
    |||||||| |||||||| ||||||||| |||||||| | ||||||||||| ||| |||||||| ||| |||  |||||||||||||| ||| |  |||||    
T  29914709 gtttggttcggttttgatgttaaaaatcatccaaaccacaagataaaaaa-aattcggtttgg-ttggtttatttgacttttaaaatgaaaaccaaatca 29914612  T
Q  411 aaccaatgcggttt 424  Q
    || |||||| ||||    
T  29914611 aatcaatgcagttt 29914598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 12193508 - 12193452
Alignment:
Q  382 gattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtt 438  Q
    |||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||||    
T  12193508 gattgacttttaaaataaaatctgaaccaaatcaatgcggtttggattggatcggtt 12193452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 12437936 - 12437880
Alignment:
Q  382 gattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtt 438  Q
    |||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||||    
T  12437936 gattgacttttaaaataaaatctgaaccaaatcaatgcggtttggattggatcggtt 12437880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 424
Target Start/End: Complemental strand, 7428555 - 7428441
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatc 409  Q
    ||||||||| |||| ||||||||||| | |||  |||   | ||||||||   ||||||||||||||| || | |||||||||||||||||||  ||| |    
T  7428555 ggtttggttcggttatgaggttaaaagtcatctgaaccgcatgataaaaatgcatgcggtttggtttggttcggttgacttttaaaataaaattcgaacc 7428456  T
Q  410 aaaccaatgcggttt 424  Q
    |||| ||||||||||    
T  7428455 aaactaatgcggttt 7428441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 22811298 - 22811198
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctga 406  Q
    |||||||||||||| |||||||| ||||| | |||  ||||  |||||||| |   |||| |||||||||| || | ||||||||||||||||||| |||    
T  22811298 tgcggtttggtttgattttgaggctaaaagtcatctgaactgcaagataaatatgtatgctgtttggtttggttcggttgacttttaaaataaaatttga 22811199  T
Q  407 a 407  Q
    |    
T  22811198 a 22811198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 14549184 - 14549270
Alignment:
Q  310 ggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||| || |||||||||  ||||| | ||||||||  | ||||||||||  |||||||||||||||||| | |||| ||||||||    
T  14549184 ggtttgattcggttttgagcataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttgattcggttgatttttaaaa 14549270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 33068223 - 33068293
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttg 377  Q
    |||||||||||| |||||||||  ||||| | ||||||||   |||||||||||  |||||||||||||||    
T  33068223 tgcggtttggttcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttg 33068293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 10661111 - 10661200
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    |||||||||||| |||||||||  ||||| | ||||||||    ||||||||||  ||||||||||||||| || | |||| ||||||||    
T  10661111 tgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 10661200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 36340829 - 36340776
Alignment:
Q  363 atgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||||||| |||| || | |||||||||||||||||||| ||| ||||||||    
T  36340829 atgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaaccaa 36340776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 44672738 - 44672835
Alignment:
Q  299 gtttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaa 396  Q
    ||||||| ||| |||||||| |||||||||  ||||| | |||||||     ||||||||||  ||||||||||||||| || |||||| ||||||||    
T  44672738 gtttgcggtgcagtttggttcggttttgagcataaaagtcatccaaatcgcgagataaaaaaacatgcggtttggtttggttcgattgatttttaaaa 44672835  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 9012897 - 9012853
Alignment:
Q  372 ggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||||| |||||||||||||||||||| |||| ||| ||||||||    
T  9012897 ggtttggtttgattgacttttaaaatacaatccgaaccaaaccaa 9012853  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 30254256 - 30254188
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtt 375  Q
    |||||||||||||| |||||||| ||||||||||| ||||   |||||||| ||  ||| |||||||||    
T  30254256 tgcggtttggtttgattttgaggctaaaaattatcaaaaccgcaagataaataagcatgtggtttggtt 30254188  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 37162764 - 37162724
Alignment:
Q  307 tgcggtttggtttggttttgaggttaaaaattatccaaact 347  Q
    |||||||||||||||||||||| |||||||| || ||||||    
T  37162764 tgcggtttggtttggttttgagattaaaaatcattcaaact 37162724  T

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Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 416
Target Start/End: Original strand, 25814 - 25929
Alignment:
Q  300 tttgcgatgcggtttggtttggttttgaggttaaaaattatccaaactataagataaaaaataatgcggtttggtttgatttgattgacttttaaaataa 399  Q
    |||||| ||| |||||||| |||||| ||||||||| | |||| |||  |||||||||||| | ||| |||||||||| || | ||||||||||||||||    
T  25814 tttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaaca-tgcagtttggtttggttcggttgacttttaaaataa 25912  T
Q  400 aatctgaatcaaaccaa 416  Q
    ||||  || ||||||||    
T  25913 aatccaaaccaaaccaa 25929  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 62399 - 62466
Alignment:
Q  349 taagataaaaaataatgcggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaa 416  Q
    |||| |||||||  |||||||||| |||| || | |||||||||||||||||||| ||| ||||||||    
T  62399 taagctaaaaaagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaaccaa 62466  T

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Target: scaffold0664 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 6065 - 6101
Alignment:
Q  409 caaaccaatgcggtttcggttggaacggtttgtgcag 445  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  6065 caaaccaatgcggtttgggttggatcggtttgtgcag 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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