View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11135_low_4 (Length: 387)
Name: NF11135_low_4
Description: NF11135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11135_low_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 32813909 - 32813532
Alignment:
| Q |
10 |
atgaacaatgtgctacagcctacagatatatgtgaatgccatgacatgctttgacttttcctccctttgaattctgtcacagggagagaaggatgacaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813909 |
atgaacaatgtgctacagcctacagatatatgtgaatgccatgacatgctttgacttttcctccctttgaattctgtcacagggagagaaggatgacaag |
32813810 |
T |
|
| Q |
110 |
atcatagcagtttgtgctgatgaccctgagtaccgccattacaaggacatcaaggagctccctccacataggcttgctgaaattagaagattctttgagg |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813809 |
atcatagcagtttgtgctgatgatcctgagtaccgccattacaaggacatcaaggagctccctccacataggcttgctgaaattagaagattctttgagg |
32813710 |
T |
|
| Q |
210 |
actgtatcctgttatttgcaatgaagaactgataatttttgacaatatgttcttagatgatttatttcaccttgaccctttaaatgctttcaccaatgct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32813709 |
actgtatcctgttatttgcaatgaagaactgataatttttgacaatatgttcttagatgatttatttcaccatgaccctttaaatgctttcaccaatgct |
32813610 |
T |
|
| Q |
310 |
tctgttggtgttattcccatatatgttgtgtgtccttaactttccacactagacaagaagaatgagaacaaaatagtc |
387 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813609 |
tctgttggtgtaattcccatatatgttgtgtgtccttaactttccacactagacaagaagaatgagaacaaaatagtc |
32813532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 7987214 - 7987354
Alignment:
| Q |
89 |
cagggagagaaggatgacaagatcatagcagtttgtgctgatgaccctgagtaccgccattacaaggacatcaaggagctccctccacataggcttgctg |
188 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||| || | |||| |
|
|
| T |
7987214 |
cagggtgagagggatgacaagatcatagcagtttgtgctgatgaccctgaattccgccattacacagacatcaaagagcttcctccacatcggttggctg |
7987313 |
T |
|
| Q |
189 |
aaattagaagattctttgaggactgtatcctgttatttgca |
229 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7987314 |
aaataagaagattctttgaggattgtatcctgttatttgca |
7987354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 7987731 - 7987775
Alignment:
| Q |
338 |
tgtgtccttaactttccacactagacaagaagaatgagaacaaaa |
382 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
7987731 |
tgtgtccttagctagccacactagacaagaagaatgagaacaaaa |
7987775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 29369080 - 29369169
Alignment:
| Q |
89 |
cagggagagaaggatgacaagatcatagcagtttgtgctgatgaccctgagtaccgccattacaaggacatcaaggagctccctccacat |
178 |
Q |
| |
|
||||| ||||| |||||||||||||| || || ||||||||||| |||||||| | |||||||| || ||||||||||||||||||||| |
|
|
| T |
29369080 |
cagggtgagaaagatgacaagatcattgctgtctgtgctgatgatcctgagtataggcattacaatgatatcaaggagctccctccacat |
29369169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 43548856 - 43548944
Alignment:
| Q |
89 |
cagggagagaaggatgacaagatcatagcagtttgtgctgatgaccctgagtaccgccattacaaggacatcaaggagctccctccaca |
177 |
Q |
| |
|
||||| ||||| ||||||||||| || || || ||||||||||| |||||||| | |||||||| || |||||||||||||||||||| |
|
|
| T |
43548856 |
cagggcgagaaagatgacaagataattgctgtctgtgctgatgatcctgagtataggcattacaatgatatcaaggagctccctccaca |
43548944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University