View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11136_high_1 (Length: 820)
Name: NF11136_high_1
Description: NF11136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11136_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 438 - 673
Target Start/End: Complemental strand, 46872677 - 46872442
Alignment:
| Q |
438 |
ttcaacttccaaatagtgacatgcaatttgatgcaaatttgatatgaaatttctgactgatttaagatctgaaatttttagtcttctttatttaattata |
537 |
Q |
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| T |
46872677 |
ttcaacttccaaatagtgacatgcaatttgatgcaaatttgatatgaaatttctgactgatttaagatctgaaatttttagtcttctttatttaattatt |
46872578 |
T |
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| Q |
538 |
tttgatcaatcagatgaactgaactcaaatattgaaacaaaactccgtaaaatattagagctaactatcaaaaagttgtatcaaagttgaaaagagtgac |
637 |
Q |
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| T |
46872577 |
gttgatcaatcagatgaactgaactcaaatattgaaacaaaactcagtaaaatattagagctaattatcaaaaagttgtatcaaagttgaaaagagtgac |
46872478 |
T |
|
| Q |
638 |
atgcaattagttgaaatgttaatcaaataatcaata |
673 |
Q |
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| T |
46872477 |
atgcaattagttgaaatgttaatcaaataatcaata |
46872442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 46873114 - 46872869
Alignment:
| Q |
21 |
tgcaatacttcttgcacagtttcatcttgtttatgannnnnnnatcttcgttgcacgaaccaactagcttctgcgaatttggaggtggttgccttatctc |
120 |
Q |
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| T |
46873114 |
tgcaatacttcttgcacagtttcatcttgtttatgatttttttatcttcgttgcacggaccaactagcttctgcgaatttggaggtggttgccttatctc |
46873015 |
T |
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| Q |
121 |
ttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctgatctg |
220 |
Q |
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| T |
46873014 |
ttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatatgaacttagtacaaatccgtgttttgtagaaaatgtggtctgatctg |
46872915 |
T |
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| Q |
221 |
tttgattgaggaagggtcatccttggaggagggcatatcaatgcat |
266 |
Q |
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| T |
46872914 |
tttgattgaggaagggtcatccttggaggagggcatatcaatgcat |
46872869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 79 - 370
Target Start/End: Complemental strand, 46890348 - 46890057
Alignment:
| Q |
79 |
accaactagcttctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaac |
178 |
Q |
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| T |
46890348 |
accaactaacttctgccaatgtggtggtggttgccttaactcttcagctccatgagcaaagttgcaattttgtccgtttctacaagtaccaaatctgaac |
46890249 |
T |
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| Q |
179 |
ttagtacaaatctgtgttttgtagaaaatgtggtctgatctgtttgattgaggaagggtcatccttggaggagggcatatcaatgcattggaatgagaag |
278 |
Q |
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| T |
46890248 |
ttagtacaaattcgtgttttgtagaaaatgtggtctgatttgtttgattgaggcagggtcatccttggaggaggacatatcaatgcattggaaggagaag |
46890149 |
T |
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| Q |
279 |
ttccttctcttttgaagtcattgttgttcaatgaagcgaactgcggtggtgttatcttagaggttggaatatcatccggaaaagccatggtt |
370 |
Q |
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| T |
46890148 |
ttccttctcttttgaagtcattgttgctcaatgaagcgaattgcggtggggacatcttagaggttggaatatcatctggaaaagccatggtt |
46890057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 247 - 382
Target Start/End: Complemental strand, 46872864 - 46872729
Alignment:
| Q |
247 |
aggagggcatatcaatgcattggaatgagaagttccttctcttttgaagtcattgttgttcaatgaagcgaactgcggtggtgttatcttagaggttgga |
346 |
Q |
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| T |
46872864 |
aggagggcatatcaatgcattggaatgagaagttccttctcttttgaagtcatcgttgttcaatgaagcgaactgcggtggtgttatcttagaggttgga |
46872765 |
T |
|
| Q |
347 |
atatcatccggaaaagccatggttgttgtcaaagaa |
382 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
46872764 |
atatcatctggaaaagccatggttgttgtcaaagaa |
46872729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 438 - 673
Target Start/End: Complemental strand, 46889987 - 46889765
Alignment:
| Q |
438 |
ttcaacttccaaatagtgacatgcaatttgatgcaaatttgatatgaaatttctgactgatttaagatctgaaatttttagtcttctttatttaattata |
537 |
Q |
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||||| |||||| |||||||||||| || |||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| || ||||||| |
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| T |
46889987 |
ttcaagttccaagtagtgacatgcagttggatgcaaatttgatctgaaatttctgacagatataagatctgaattttttagtcttcttgatctaattatt |
46889888 |
T |
|
| Q |
538 |
tttgatcaatcagatgaactgaactcaaatattgaaacaaaactccgtaaaatattagagctaactatcaaaaagttgtatcaaagttgaaaagagtgac |
637 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||| | |||||||||||| || | ||||| | |
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| T |
46889887 |
gttgatcaatcagatgaactgaactaaaaaattgaaacaaaacatagtaaaattttagagctga--atcaaaaagttg-ataatagttg----------c |
46889801 |
T |
|
| Q |
638 |
atgcaattagttgaaatgttaatcaaataatcaata |
673 |
Q |
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| T |
46889800 |
atgcaattagttgaaatgttaatcaaataatcaata |
46889765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 46863763 - 46863611
Alignment:
| Q |
119 |
tcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctgatc |
218 |
Q |
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|||||| ||||||||||||||||||||| | | ||||||||||||| |||||| |||||||||||||| || | || ||||||||||||||| || || |
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| T |
46863763 |
tcttcaaccccatgagcaaagttgcaatctttaccgtttctacaagtaccaaacctgaacttagtacagattcgagtcttgtagaaaatgtgggttgctc |
46863664 |
T |
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| Q |
219 |
tgtttgattgaggaagggtcatccttggaggagggcatatcaatgcattggaa |
271 |
Q |
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|||||||| |||| || |||| |||||||| |||||||||||||||||||| |
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| T |
46863663 |
tgtttgatggaggcagaaccatctttggaggaaggcatatcaatgcattggaa |
46863611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 739 - 803
Target Start/End: Complemental strand, 46872376 - 46872312
Alignment:
| Q |
739 |
cacgatggatgagatgatcaaaggtttggttattgttttcagggtttggtcaagaaaatgtgatg |
803 |
Q |
| |
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| T |
46872376 |
cacgatggatgagatgatcaaaggtttggttattgttttcagggtttggtcaagaaaatatgatg |
46872312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 739 - 789
Target Start/End: Complemental strand, 46889703 - 46889653
Alignment:
| Q |
739 |
cacgatggatgagatgatcaaaggtttggttattgttttcagggtttggtc |
789 |
Q |
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| T |
46889703 |
cacgatggatgggatgatcaaaggtttggttattgttttcagggtttggtc |
46889653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 46898876 - 46898797
Alignment:
| Q |
104 |
ggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagt |
183 |
Q |
| |
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| T |
46898876 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttctacaagtaccaaacctgaacttagt |
46898797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 46863466 - 46863418
Alignment:
| Q |
332 |
atcttagaggttggaatatcatccggaaaagccatggttgttgtcaaag |
380 |
Q |
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||||||||||||||||||| || |||||| |||||||||||||||||| |
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| T |
46863466 |
atcttagaggttggaatattgtcaggaaaaaccatggttgttgtcaaag |
46863418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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