View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11136_low_2 (Length: 563)
Name: NF11136_low_2
Description: NF11136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11136_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 1457853 - 1458330
Alignment:
| Q |
18 |
accttaaattccatgaatcaaattaaccataaaaactgcacataccattcacattattgtataaggagcacttgaccaagaaagaaacaagtttctaagg |
117 |
Q |
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| T |
1457853 |
accttaaattccgtgaatcaaattaaccataaaaagtgcacataccattcacattattgtataaggagcacttgaccaagaaagaaacaagtttctaagg |
1457952 |
T |
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| Q |
118 |
ttt------------gtgtttggaatatttaagagagaaatgcttttagtgaatccaggttcagaaggatgattacacattagtattttgtctttcaacc |
205 |
Q |
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| T |
1457953 |
ttttagtgatgtgatgtgtttggaatatttaagagagaaattcttttagtgaatccaggttcagaaggatgattacacattagtattttgtctttcaacc |
1458052 |
T |
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| Q |
206 |
aaggctagttggtcaatcaccaacagaagacgccttaaaatttctaaagctgaaataatgcaatgaatcttacttgcatataagacaaaagccgcatcaa |
305 |
Q |
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| T |
1458053 |
gaggctagttggtcaatcaccaacagaagacgccttaaaatttctaaagctgaaataatgcaatgaatcttacttgcata--agacaaaagccgcatcaa |
1458150 |
T |
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| Q |
306 |
gagtaaaaaagattaaggttctgaaattgattcattagataataactctaacataatagttacaaatgatttgaaaaggtgaatgatgcgattatatacg |
405 |
Q |
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| T |
1458151 |
gagtaaaaaagattaaggctctgaaattgattcattagataataactgtaacataatagttacaaatgatttgaaaaggtgaatgatgcgattatatacg |
1458250 |
T |
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| Q |
406 |
gaaaccaatagatcaaaggttaatgaatcacaatgtgccttccgagaaaaatgttttctgtgaccctcaaaggcttccac |
485 |
Q |
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| T |
1458251 |
gaaaccattagatcaaaggttaatgaatcacaatgtgccttccgagaaaaatgttttctgtgaccctcaaaggcttccac |
1458330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 1443427 - 1443391
Alignment:
| Q |
450 |
agaaaaatgttttctgtgaccctcaaaggcttccact |
486 |
Q |
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| T |
1443427 |
agaaaaatgtgttttgtgaccctcaaaggcttccact |
1443391 |
T |
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