View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11137_high_11 (Length: 490)

Name: NF11137_high_11
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11137_high_11
NF11137_high_11
[»] chr5 (14 HSPs)
chr5 (161-321)||(30910733-30910894)
chr5 (161-316)||(33173925-33174079)
chr5 (185-315)||(30912150-30912280)
chr5 (164-322)||(22047723-22047882)
chr5 (203-322)||(22308805-22308924)
chr5 (203-315)||(22307506-22307618)
chr5 (161-322)||(325151-325310)
chr5 (117-287)||(39603879-39604059)
chr5 (161-287)||(30859135-30859262)
chr5 (121-287)||(27705231-27705406)
chr5 (161-241)||(15548310-15548390)
chr5 (184-316)||(1010351-1010483)
chr5 (184-324)||(8521244-8521384)
chr5 (254-314)||(41798004-41798064)
[»] chr2 (29 HSPs)
chr2 (161-316)||(29219382-29219538)
chr2 (161-316)||(29332681-29332837)
chr2 (161-316)||(18616969-18617125)
chr2 (201-314)||(34468957-34469070)
chr2 (203-315)||(6032320-6032432)
chr2 (203-329)||(6030589-6030715)
chr2 (401-475)||(14559527-14559601)
chr2 (186-315)||(29220865-29220994)
chr2 (186-315)||(29334164-29334293)
chr2 (164-315)||(1085355-1085504)
chr2 (186-314)||(18615515-18615643)
chr2 (185-316)||(1082985-1083116)
chr2 (204-315)||(44192453-44192564)
chr2 (203-315)||(44191134-44191246)
chr2 (345-399)||(14557215-14557269)
chr2 (184-326)||(12359665-12359808)
chr2 (186-300)||(11315946-11316060)
chr2 (161-287)||(11317332-11317458)
chr2 (185-287)||(32470563-32470665)
chr2 (121-217)||(6030385-6030490)
chr2 (163-315)||(17459251-17459404)
chr2 (203-317)||(43033078-43033192)
chr2 (410-475)||(32548902-32548967)
chr2 (203-287)||(7437767-7437851)
chr2 (444-476)||(14569368-14569400)
chr2 (246-315)||(249022-249091)
chr2 (201-242)||(36011646-36011687)
chr2 (161-300)||(11547672-11547812)
chr2 (209-297)||(36010593-36010681)
[»] chr7 (29 HSPs)
chr7 (185-315)||(22538836-22538966)
chr7 (161-313)||(11501180-11501330)
chr7 (164-315)||(22335977-22336128)
chr7 (164-318)||(13564206-13564360)
chr7 (185-316)||(13562819-13562950)
chr7 (203-312)||(24844262-24844371)
chr7 (203-317)||(22337377-22337490)
chr7 (161-320)||(11502385-11502545)
chr7 (203-315)||(3413530-3413642)
chr7 (249-315)||(40812665-40812731)
chr7 (203-315)||(3414840-3414952)
chr7 (188-319)||(47456366-47456497)
chr7 (185-287)||(43459481-43459583)
chr7 (203-316)||(22537556-22537669)
chr7 (203-315)||(40738844-40738957)
chr7 (161-315)||(32254987-32255142)
chr7 (121-236)||(40811397-40811521)
chr7 (203-317)||(24281070-24281185)
chr7 (161-316)||(41078753-41078908)
chr7 (246-304)||(24844399-24844457)
chr7 (161-278)||(43460787-43460904)
chr7 (201-321)||(32602925-32603045)
chr7 (184-299)||(45455359-45455474)
chr7 (203-297)||(30310137-30310231)
chr7 (203-300)||(30333298-30333395)
chr7 (209-296)||(534078-534165)
chr7 (209-296)||(537331-537418)
chr7 (185-287)||(47454363-47454465)
chr7 (203-316)||(4298710-4298823)
[»] chr6 (22 HSPs)
chr6 (163-315)||(17837614-17837766)
chr6 (203-315)||(6701378-6701490)
chr6 (185-316)||(17839127-17839258)
chr6 (161-317)||(23397320-23397474)
chr6 (185-315)||(29380189-29380319)
chr6 (203-316)||(2687930-2688043)
chr6 (161-316)||(5187586-5187741)
chr6 (203-316)||(23392211-23392324)
chr6 (185-315)||(6702859-6702988)
chr6 (185-316)||(5186565-5186696)
chr6 (163-316)||(29381696-29381849)
chr6 (178-320)||(29722656-29722799)
chr6 (203-316)||(32507032-32507145)
chr6 (203-301)||(2687242-2687340)
chr6 (184-322)||(18346738-18346875)
chr6 (225-316)||(12256612-12256703)
chr6 (250-307)||(12256557-12256614)
chr6 (204-326)||(15730036-15730159)
chr6 (203-317)||(6452517-6452631)
chr6 (184-277)||(12669759-12669853)
chr6 (221-317)||(233588-233684)
chr6 (203-287)||(6452310-6452394)
[»] chr4 (30 HSPs)
chr4 (164-317)||(23201842-23201995)
chr4 (203-316)||(10167422-10167535)
chr4 (203-316)||(10168789-10168902)
chr4 (204-316)||(33231386-33231498)
chr4 (185-315)||(54866619-54866748)
chr4 (203-316)||(50546903-50547016)
chr4 (203-315)||(23203959-23204071)
chr4 (203-317)||(4714015-4714130)
chr4 (161-322)||(7707579-7707741)
chr4 (185-316)||(7708776-7708909)
chr4 (203-315)||(13165494-13165605)
chr4 (185-285)||(33232685-33232785)
chr4 (185-321)||(52241143-52241279)
chr4 (203-309)||(54865109-54865214)
chr4 (203-312)||(50548229-50548334)
chr4 (117-318)||(2312392-2312603)
chr4 (184-300)||(390230-390346)
chr4 (203-287)||(1188869-1188953)
chr4 (203-287)||(27847704-27847788)
chr4 (121-221)||(52239969-52240078)
chr4 (203-311)||(53204363-53204471)
chr4 (188-287)||(1829779-1829878)
chr4 (117-156)||(15449986-15450025)
chr4 (161-287)||(52963595-52963719)
chr4 (186-287)||(393626-393728)
chr4 (203-287)||(53205489-53205573)
chr4 (203-317)||(1831269-1831383)
chr4 (249-287)||(4871416-4871454)
chr4 (203-288)||(31965860-31965945)
chr4 (203-288)||(40792776-40792861)
[»] chr8 (28 HSPs)
chr8 (185-321)||(17339537-17339673)
chr8 (185-316)||(13116327-13116458)
chr8 (161-318)||(13117597-13117754)
chr8 (184-317)||(17338037-17338170)
chr8 (185-316)||(42100094-42100225)
chr8 (161-316)||(42098560-42098715)
chr8 (117-277)||(4810505-4810670)
chr8 (203-287)||(6397809-6397893)
chr8 (203-314)||(211594-211705)
chr8 (203-314)||(240551-240662)
chr8 (203-314)||(725217-725328)
chr8 (203-314)||(793906-794017)
chr8 (185-287)||(30787588-30787690)
chr8 (189-287)||(41629734-41629832)
chr8 (164-317)||(44076329-44076483)
chr8 (185-317)||(28420161-28420294)
chr8 (185-316)||(28418803-28418935)
chr8 (161-287)||(45281153-45281278)
chr8 (203-299)||(26696546-26696642)
chr8 (249-315)||(32797136-32797202)
chr8 (203-287)||(22551033-22551116)
chr8 (184-242)||(6398484-6398542)
chr8 (195-277)||(29104363-29104445)
chr8 (202-287)||(212717-212802)
chr8 (202-287)||(239452-239537)
chr8 (202-287)||(726340-726425)
chr8 (202-287)||(792807-792892)
chr8 (202-287)||(798841-798926)
[»] chr1 (19 HSPs)
chr1 (185-317)||(16963830-16963962)
chr1 (193-315)||(15234037-15234159)
chr1 (161-322)||(15232743-15232904)
chr1 (189-316)||(49802887-49803014)
chr1 (184-316)||(49801614-49801745)
chr1 (161-298)||(16965090-16965228)
chr1 (203-287)||(16123313-16123397)
chr1 (161-288)||(15072755-15072881)
chr1 (184-324)||(52628860-52629000)
chr1 (188-299)||(46111479-46111590)
chr1 (249-318)||(42245939-42246008)
chr1 (204-300)||(51042350-51042445)
chr1 (186-300)||(24499644-24499758)
chr1 (248-326)||(52627502-52627580)
chr1 (249-319)||(14470850-14470920)
chr1 (161-319)||(46467140-46467297)
chr1 (161-263)||(44999427-44999527)
chr1 (185-221)||(46110374-46110410)
chr1 (203-287)||(50444704-50444788)
[»] chr3 (31 HSPs)
chr3 (161-315)||(10732093-10732247)
chr3 (204-316)||(26887562-26887674)
chr3 (189-312)||(27837921-27838044)
chr3 (203-322)||(53614279-53614398)
chr3 (164-315)||(41264620-41264771)
chr3 (207-316)||(35370910-35371019)
chr3 (185-316)||(10730882-10731013)
chr3 (185-316)||(41263635-41263766)
chr3 (203-315)||(35372164-35372279)
chr3 (185-315)||(53612869-53612999)
chr3 (203-317)||(26886268-26886382)
chr3 (201-287)||(18458661-18458747)
chr3 (185-316)||(50810821-50810953)
chr3 (185-316)||(50864911-50865043)
chr3 (201-316)||(42686149-42686264)
chr3 (185-316)||(38240903-38241034)
chr3 (201-316)||(50809418-50809533)
chr3 (201-316)||(50866329-50866444)
chr3 (249-315)||(3817315-3817381)
chr3 (206-316)||(40244184-40244294)
chr3 (161-270)||(27841674-27841783)
chr3 (206-297)||(12107992-12108083)
chr3 (203-317)||(36176512-36176627)
chr3 (249-315)||(3811525-3811591)
chr3 (185-287)||(18197173-18197275)
chr3 (205-297)||(37736089-37736181)
chr3 (203-317)||(53187555-53187668)
chr3 (161-272)||(53622703-53622815)
chr3 (201-316)||(37735303-37735418)
chr3 (119-156)||(28909521-28909558)
chr3 (117-157)||(10301098-10301138)
[»] scaffold0019 (2 HSPs)
scaffold0019 (202-316)||(61848-61962)
scaffold0019 (203-312)||(63137-63246)
[»] scaffold0472 (1 HSPs)
scaffold0472 (184-317)||(732-863)
[»] scaffold0077 (2 HSPs)
scaffold0077 (161-321)||(54148-54309)
scaffold0077 (185-288)||(52617-52720)
[»] scaffold0118 (1 HSPs)
scaffold0118 (161-300)||(43538-43678)
[»] scaffold1152 (1 HSPs)
scaffold1152 (185-317)||(2464-2595)
[»] scaffold0031 (1 HSPs)
scaffold0031 (203-287)||(123995-124079)
[»] scaffold0078 (1 HSPs)
scaffold0078 (203-287)||(18838-18922)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 30910894 - 30910733
Alignment:
Q  161 tggtccaccatagacatcattttg-gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||| ||||||||||| | |||||||||||||| |||||||||||||| |||| || |||||  |||||||||||||  |||||||||||||||    
T  30910894 tggtccaccaaagacatcatttggtgttaaagttaacagtcgagatttatttggtaaacagaggaaaatgtgagggactaaaacgccatttttattaatt 30910795  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaatt 321  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30910794 gtgggaccaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctaaatt 30910733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 33173925 - 33174079
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgag-atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||  ||  ||||||| ||||||| | || ||||||||||||||| || |||||| |||||||||||||  ||||||||||||| |    
T  33173925 tggtccaccatagacat--ttggggttaaacttaacagccaaggatttatttggcaaacagaggaaaaggtgagggactaaaacgccatttttattaaat 33174022  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33174023 gtgggatcaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcct 33174079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 30912150 - 30912280
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||   | |||||||||||||||||||  ||||| |||||||||||||  ||| ||||||||||||||| |||||||| |||||||||||    
T  30912150 gttaaagttaacacttgggatttatttggcaaacggagaaaaaggtgagggactaaaacgccacttttattaattgtgggaccaaaatgaaaacatgaaa 30912249  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||| |||||||||||||||||    
T  30912250 ttaaataagggactaaacgatctaataagcc 30912280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 322
Target Start/End: Complemental strand, 22047882 - 22047723
Alignment:
Q  164 tccaccatagacatcattttg-gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtg 262  Q
    ||||||||||||||||||| | |||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||| ||||      ||||||||||||||    
T  22047882 tccaccatagacatcatttagagttaaacttaacagccaggatttatttggcaaacggaggaaaaaatgagggaccaaaacgtacgttttattaattgtg 22047783  T
Q  263 gaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaattt 322  Q
    | |||||||| ||||| ||||||||| ||||||||||   |||| |||||||||| ||||    
T  22047782 ggaccaaaatgaaaacttgaaattaattaagggaccattggatcaaataagcctttattt 22047723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 22308805 - 22308924
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||||||  ||||  |||||||||||||  ||  ||||||||||| ||| |||||||| ||||||||||||||  || ||||||||||    
T  22308805 gatttatttggcaaacggagcaaaatgtgagggactaaaacgcctgttttattaattatgggaccaaaatgaaaacatgaaattatttaggggaccaaac 22308904  T
Q  303 gatctaataagccttaattt 322  Q
    |||||||||||||| |||||    
T  22308905 gatctaataagcctaaattt 22308924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 22307618 - 22307506
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| ||  ||||  ||||||||||||| |||  ||||||||||| |||||||||||| |||||||||||||   || ||||||||||    
T  22307618 gatttatttggcaaacagagcaaaaagtgagggactaaaacacctgttttattaattatggaaccaaaatgaaaacatgaaattgtttaggggaccaaac 22307519  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  22307518 gatctaataagcc 22307506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 325151 - 325310
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||||||||  ||   |||||||||||||| || ||||||||||||||||||| |||||  |||||||| ||||      ||||||||||||    
T  325151 tggtccaccatagacat--ttagagttaaagttaacagtcgggatttatttggcaaacggaggaaaacttgagggaccaaaaggtacgttttattaattg 325248  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaattt 322  Q
    ||| |||||||| ||||| ||||||||  | ||||||||   |||| |||||||||| ||||    
T  325249 tgggaccaaaatgaaaacttgaaattatttgagggaccattagatcaaataagcctttattt 325310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 39604059 - 39603879
Alignment:
Q  117 aacagtttaaattaaaaatattaatagaatctatggtggatgagt---------ggtccaccatagacatcattttgg-ttaaagttaacagacgagatt 206  Q
    |||||||||||||||||  |||||||| ||||||||||||| | |         |||| |||||||||||||||| || ||||| ||||||| |  ||||    
T  39604059 aacagtttaaattaaaataattaataggatctatggtggatcacttttaaggttggtctaccatagacatcatttggggttaaacttaacagtcatgatt 39603960  T
Q  207 tatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||| |||||  |||||||| ||||      ||||||||||||||| | |||||| ||||| ||||||||    
T  39603959 tatttggcaaacggaggaaaatttgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaaaacttgaaatta 39603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 30859135 - 30859262
Alignment:
Q  161 tggtccaccatagacatcattt-tggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    ||||||||||||||||||||||  ||||||| ||||| | | ||| ||||||||||||| || |||||  ||||||||| |||      |||||||||||    
T  30859135 tggtccaccatagacatcatttggggttaaacttaacggtcaagacttatttggcaaacagaggaaaatgtgagggacttaaacgtacgttttattaatt 30859234  T
Q  260 gtggaaccaaaataaaaacatgaaatta 287  Q
    |||| |||||||| ||||| ||||||||    
T  30859235 gtgggaccaaaatgaaaacttgaaatta 30859262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 287
Target Start/End: Original strand, 27705231 - 27705406
Alignment:
Q  121 gtttaaattaaaaatattaatagaatctatggtgga-------tgag--tggtccaccatagacatcattttggttaaagttaacagacgagatttattt 211  Q
    ||||||||||||||||||||||| ||||||||||||       | ||  |||||||||||||||||||||| | ||||||||||| | |   ||||||||    
T  27705231 gtttaaattaaaaatattaataggatctatggtggaccacttttaaggttggtccaccatagacatcatttggattaaagttaactgtctgtatttattt 27705330  T
Q  212 ggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||| ||| |||||  |||||||| ||||      |||||||||||||   |||||||| ||||| ||||||||    
T  27705331 ggcaaaaggaggaaaatctgagggaccaaaacgtacgttttattaattgtatgaccaaaatgaaaacttgaaatta 27705406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 15548390 - 15548310
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaa 241  Q
    |||||||||| ||||||||||| || ||||| ||||||| |  ||||||||||||||||||| ||||| |||||||||||||    
T  15548390 tggtccaccagagacatcatttagggttaaacttaacaggcaggatttatttggcaaacggaggaaaa-atgagggactaaa 15548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 1010351 - 1010483
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||| | || |||||||||| |  |||||   |||  |||||||| |||| |  | |||||||| || ||| |||||||||||||| ||||    
T  1010351 ggttaaagttaaccgtcgggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaataaaaacttgaa 1010450  T
Q  284 attaaataagggaccaaacgatctaataagcct 316  Q
    ||||| |||||||||||| || ||| |||||||    
T  1010451 attaattaagggaccaaatgacctattaagcct 1010483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 8521384 - 8521244
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||| | || |||||||||| |  |||||   |||  |||||||| |||| |  | |||||||| || ||| |||||||| ||||| ||||    
T  8521384 ggttaaagttaaccgtcgggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaa 8521285  T
Q  284 attaaataagggaccaaacgatctaataagccttaatttaa 324  Q
    ||||| |||||||||||| || ||| |||| | ||||||||    
T  8521284 attaattaagggaccaaatgacctattaagtcataatttaa 8521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 41798004 - 41798064
Alignment:
Q  254 ttaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagc 314  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||||  |||| |||||||    
T  41798004 ttaattgtgggaccaaaataaaaacttgaaattatttgagggaccaatggatcaaataagc 41798064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 29219538 - 29219382
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||||||| || ||||| |||||||  | ||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  29219538 tggtccaccatagacatcatttggggttaaacttaacagttgggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaatt 29219439  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  29219438 gtgggaccaaaatgaaaacatgaaattaaataaaggaccaaacgatctaataagcct 29219382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 29332837 - 29332681
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||||||| || ||||| |||||||  | ||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  29332837 tggtccaccatagacatcatttggggttaaacttaacagttgggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaatt 29332738  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  29332737 gtgggaccaaaatgaaaacatgaaattaaataaaggaccaaacgatctaataagcct 29332681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 18616969 - 18617125
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||||||| || ||||| |||| ||  | ||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  18616969 tggtccaccatagacatcatttggggttaaacttaatagttgggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaatt 18617068  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  18617069 gtgggaccaaaatgaaaacatgaaattaaataaaggaccaaatgatctaataagcct 18617125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 34469070 - 34468957
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||||||||||| ||||||||  |||||||||||||   |||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  34469070 gagatttatttggcaaacagaagaaaatgtgagggactaaaacgtcatttttattaattgtgcgaccaaaatgaaaacatgaaattaaataagggaccaa 34468971  T
Q  301 acgatctaataagc 314  Q
    ||||||||||||||    
T  34468970 acgatctaataagc 34468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 6032320 - 6032432
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| || ||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||    
T  6032320 gatttatttggcaaacagaggaaaaaatacgggactaaaacaccatttttattaattgtggaaccaaaataaaaacatgaaattgaataaaggatcaaac 6032419  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  6032420 gatctaataagcc 6032432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 6030715 - 6030589
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| ||||| || ||| |||||||  ||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  6030715 gatttatttggcaaacggaggaaaaaataaggaactaaaacgccaattttattaattgtgggactaaaatgaaaacatgaaattaaataagggaccaaac 6030616  T
Q  303 gatctaataagccttaatttaatttta 329  Q
    ||||||||||||||  |||| ||||||    
T  6030615 gatctaataagcctatattttatttta 6030589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 14559527 - 14559601
Alignment:
Q  401 aaacttaatgcagcagaaccaccttttttgataaaccatataatctctcatatctttgaggaaggtgttggtctt 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14559527 aaacttaatgcagcagaaccaccttttttgataaaccatataatctctcatatctttgaggaaggtgttggtctt 14559601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 29220865 - 29220994
Alignment:
Q  186 ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaat 285  Q
    ||||| ||||||| || |||| ||||||||||| || |||||  | |||||||||||  ||||||||||||||||||| |||||||| |||| |||||||    
T  29220865 ttaaaattaacagtcgggattaatttggcaaacagaggaaaatgtaagggactaaaaagccatttttattaattgtgggaccaaaatgaaaatatgaaat 29220964  T
Q  286 taaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||||||||||||||||||||    
T  29220965 taaataagggaccaaacgatctaataagcc 29220994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 29334164 - 29334293
Alignment:
Q  186 ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaat 285  Q
    ||||| ||||||| || |||| ||||||||||| || |||||  | |||||||||||  ||||||||||||||||||| |||||||| |||| |||||||    
T  29334164 ttaaaattaacagtcgggattaatttggcaaacagaggaaaatgtaagggactaaaaagccatttttattaattgtgggaccaaaatgaaaatatgaaat 29334263  T
Q  286 taaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||||||||||||||||||||    
T  29334264 taaataagggaccaaacgatctaataagcc 29334293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 1085355 - 1085504
Alignment:
Q  164 tccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtgg 263  Q
    ||||||||| ||||||||||  ||||| ||||| |  | ||||||||||||||||||| |||||  |||||||| ||||  ||| ||||||||| |||||    
T  1085355 tccaccataaacatcatttttattaaacttaacggttgtgatttatttggcaaacggaggaaaa--tgagggaccaaaacgccaattttattaaatgtgg 1085452  T
Q  264 aaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
     |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1085453 taccaaaatgaaaacatgaaattaaataagggaccaaacaatctaataagcc 1085504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 18615643 - 18615515
Alignment:
Q  186 ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaat 285  Q
    ||||| ||||||| || ||||||||||||||||||| |||||  |  ||||||||||  ||||||||||||||||||  |||||||| |||| |||||||    
T  18615643 ttaaaattaacagtcgggatttatttggcaaacggaggaaaatgtaggggactaaaaagccatttttattaattgtgagaccaaaatgaaaatatgaaat 18615544  T
Q  286 taaataagggaccaaacgatctaataagc 314  Q
    |||||||||||||||||||||||||||||    
T  18615543 taaataagggaccaaacgatctaataagc 18615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 1083116 - 1082985
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||   | |||||| ||||||||||||  ||||||||| |||| |||| |||||||||||||| ||||| |||||||| |||| ||||||    
T  1083116 gttaaagttaacacttgggatttaattggcaaacggagaaaaagatgacggaccaaaacaccatttttattaaatgtgggaccaaaatgaaaatatgaaa 1083017  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||| ||||||||||    
T  1083016 ttaaataagggaccaaacgatataataagcct 1082985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 44192453 - 44192564
Alignment:
Q  204 atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacg 303  Q
    ||||||||| |||||||| |||||  |||||||||||||| ||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||     
T  44192453 atttatttgacaaacggaggaaaatgtgagggactaaaatgccatttttattaattttgggatcaaaatgaaaacatgaaattaaataagggaccaaaca 44192552  T
Q  304 atctaataagcc 315  Q
    ||||||||||||    
T  44192553 atctaataagcc 44192564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 44191246 - 44191134
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||| ||||| |  |||| |||||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||     
T  44191246 gatttatttgacaaacagtggaaacgatgagggactaaaatgcaatttttattaattgtgggactaaaatgaaaacatgaaattaaataagggaccaaat 44191147  T
Q  303 gatctaataagcc 315  Q
     |||| |||||||    
T  44191146 aatcttataagcc 44191134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 14557215 - 14557269
Alignment:
Q  345 tgaattgaaagttacttttccattaaacactaaccctccgaagttcagatcctcc 399  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14557215 tgaatttaaagttacttttccattaaacactaaccctccgaagttcagatcctcc 14557269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 326
Target Start/End: Original strand, 12359665 - 12359808
Alignment:
Q  184 ggttaaagttaacag--acgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatg 281  Q
    |||||||||||||||  ||| |||||||||||| |||  | ||||| ||||||||| ||||  ||| ||||||||||||||| || ||||  ||||||||    
T  12359665 ggttaaagttaacagctacg-gatttatttggcgaacaaaggaaaaaatgagggaccaaaacgccaattttattaattgtgggactaaaacgaaaacatg 12359763  T
Q  282 aaattaaataagggaccaaacgatctaataagccttaatttaatt 326  Q
    ||||||  |||||||| |   ||||||||||||||  ||||||||    
T  12359764 aaattatttaagggacaaggtgatctaataagcctatatttaatt 12359808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 11316060 - 11315946
Alignment:
Q  186 ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaat 285  Q
    ||||| ||||||| || ||||||||||||||||||| |||||  ||||||||| |||      ||||||||||||||| |||||||| ||||| ||||||    
T  11316060 ttaaacttaacagccgggatttatttggcaaacggaggaaaacctgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaat 11315961  T
Q  286 taaataagggaccaa 300  Q
    ||  || ||||||||    
T  11315960 tatttaggggaccaa 11315946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 11317332 - 11317458
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    ||||| ||||||||||||||||  |||||| ||||| |    |||||||||| |||||||| |||||  |||||||| ||||||    ||||||||||||    
T  11317332 tggtctaccatagacatcatttgagttaaacttaactgtgaggatttatttgccaaacggaggaaaaattgagggaccaaaatatatgttttattaattg 11317431  T
Q  261 tggaaccaaaataaaaacatgaaatta 287  Q
    ||| |||||||| ||||  ||||||||    
T  11317432 tgggaccaaaatgaaaatttgaaatta 11317458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 32470563 - 32470665
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| || |||||||||| |||||||| ||||| |||||| ||| |||      ||||||||||||||| |||||||||||||| |||||    
T  32470563 gttaaacttaacagccgggatttatttgacaaacggaggaaaacatgaggaacttaaacgtacgttttattaattgtgggaccaaaataaaaacttgaaa 32470662  T
Q  285 tta 287  Q
    |||    
T  32470663 tta 32470665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 6030385 - 6030490
Alignment:
Q  121 gtttaaattaaaaatattaatagaatctatggtggatgagt---------ggtccaccatagacatcattttggttaaagttaacagacgagatttattt 211  Q
    ||||||||||||||||||||||| ||||||||| ||| | |         |||||||| |||||||||||| ||||||||||||| |  |||||||||||    
T  6030385 gtttaaattaaaaatattaataggatctatggtagatcactcttaaggttggtccaccgtagacatcatttgggttaaagttaactgttgagatttattt 6030484  T
Q  212 ggcaaa 217  Q
    ||||||    
T  6030485 ggcaaa 6030490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 17459404 - 17459251
Alignment:
Q  163 gtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgt 261  Q
    |||||||||||||||||||| || ||||| |||| || |   |||||||||||||||||| |||||  ||||||||| |||      |||||||||||||    
T  17459404 gtccaccatagacatcatttggggttaaacttaaaagtcagaatttatttggcaaacggaggaaaaagtgagggacttaaacgtacgttttattaattgt 17459305  T
Q  262 ggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    |  |||||||| ||||| ||||||||  |||||||| ||  |||| ||||||||    
T  17459304 gtgaccaaaatgaaaacttgaaattatttaagggactaatggatcaaataagcc 17459251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 43033192 - 43033078
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| |||||  |||||||| ||||      ||||||||||||||| |||||||| ||||| ||||||||  ||||||| ||       
T  43033192 gatttatttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaagggatcattg 43033093  T
Q  303 gatctaataagcctt 317  Q
    |||| ||||||||||    
T  43033092 gatcaaataagcctt 43033078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 475
Target Start/End: Original strand, 32548902 - 32548967
Alignment:
Q  410 gcagcagaaccaccttttttgataaaccatataatctctcatatctttgaggaaggtgttggtctt 475  Q
    |||||||||||||||| |||| |  | || ||| |||||||||| |||||||||||||||||||||    
T  32548902 gcagcagaaccaccttatttgcttgatcacatagtctctcatatttttgaggaaggtgttggtctt 32548967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 7437767 - 7437851
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||| | ||||||| |||||  |||||||| ||||||    ||||||||||||||| |||||||| ||||| ||||||||    
T  7437767 gatttattttgtaaacggaggaaaaattgagggaccaaaatatacgttttattaattgtgggaccaaaatgaaaacttgaaatta 7437851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 476
Target Start/End: Original strand, 14569368 - 14569400
Alignment:
Q  444 tctctcatatctttgaggaaggtgttggtcttg 476  Q
    |||||||||||||||||||||||||||||||||    
T  14569368 tctctcatatctttgaggaaggtgttggtcttg 14569400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 249091 - 249022
Alignment:
Q  246 catttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    |||||||||||| | ||| |||||||| |||| | ||||| |  |||||||||||| |||||||||||||    
T  249091 catttttattaaatatgggaccaaaatgaaaataagaaataacttaagggaccaaatgatctaataagcc 249022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 36011646 - 36011687
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaa 242  Q
    |||||||||||||||||||||  |||| ||||||||||||||    
T  36011646 gagatttatttggcaaacggattaaaaaatgagggactaaaa 36011687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 300
Target Start/End: Complemental strand, 11547812 - 11547672
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||  ||||||||||||| || ||||| ||||||| |  |||||||||| |||||| | ||||| |||||||  ||||| |    |||||||||||    
T  11547812 tggtccatgatagacatcatttggggttaaacttaacagtcaggatttatttgacaaacgaaggaaaaaatgaggggttaaaacatgtgttttattaatt 11547713  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
     ||  |||||||| ||||| ||||||||  ||| |||||||    
T  11547712 atgagaccaaaatgaaaacttgaaattatttaaaggaccaa 11547672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 36010681 - 36010593
Alignment:
Q  209 tttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggac 297  Q
    ||||||||||| | |||||  |||||||||||||||    |||||||||| ||   |||||||| ||||||||||||||  ||||||||    
T  36010681 tttggcaaacgaaggaaaaagtgagggactaaaatatacgttttattaatcgtaagaccaaaatgaaaacatgaaattatttaagggac 36010593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 22538836 - 22538966
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||| |||||||  |||||||||||    
T  22538836 gttaaagttaaccgtcgagatttatttggcaaacggaggaaaagatgagggactaaaacgtcatttttattaattgtgggaccaaaaagaaaacatgaaa 22538935  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    |||||||||||||||||||||||||||||||    
T  22538936 ttaaataagggaccaaacgatctaataagcc 22538966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 313
Target Start/End: Complemental strand, 11501330 - 11501180
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||||||||  ||   |||||||||||||| || ||||||||||||||| ||| |||||| |||||||||||||| | ||||||||||| ||    
T  11501330 tggtccaccatagacat--ttgaagttaaagttaacagtcgggatttatttggcaaatggaggaaaaggtgagggactaaaatgctatttttattaactg 11501233  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataag 313  Q
    ||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  11501232 tgggaccaaaatgaaaacatgaaattaattaaaggaccaaacgatctaataag 11501180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 22336128 - 22335977
Alignment:
Q  164 tccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtg 262  Q
    |||||||||| |||||||| || ||||| ||||||  || |||||||||||||||| || |||||| |||||||||||||  ||||||||||||||||||    
T  22336128 tccaccatag-catcatttggggttaaacttaacattcgggatttatttggcaaactgaggaaaaggtgagggactaaaacgccatttttattaattgtg 22336030  T
Q  263 gaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    | |||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  22336029 ggaccaaaatgaaaacacgaaattaaataagggaccaaaagatctaataagcc 22335977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 164 - 318
Target Start/End: Original strand, 13564206 - 13564360
Alignment:
Q  164 tccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtg 262  Q
    |||||||||||||| |||| || ||||| ||||| | || ||||||||||||||||||| |||||  |||||||||||||  ||| ||||||||||||||    
T  13564206 tccaccatagacattatttggggttaaacttaac-gtcgggatttatttggcaaacggaggaaaatgtgagggactaaaacgccagttttattaattgtg 13564304  T
Q  263 gaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctta 318  Q
    | |||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||    
T  13564305 ggaccaaaatgaaaacaagaaattaaataagggactaaatgatctaataagcctta 13564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 13562950 - 13562819
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||  || ||||||||||| |||| ||  ||||  |||||||||||||  |||||||||||| |||||| ||||||||||||||| ||||    
T  13562950 gttaaagttaacaatcgggatttatttggtaaacagagaaaaatgtgagggactaaaacgccatttttattacttgtgggaccaaaataaaaacaagaaa 13562851  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||| ||||||||||||||||||    
T  13562850 ttaaataagggactaaacgatctaataagcct 13562819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 24844371 - 24844262
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||||||||||||  |||||||||||||  |||||| |||||||||| |||| ||||||||||||| ||||||||||||||| ||| |    
T  24844371 gatttatttggcaaacggaagaaaatgtgagggactaaaacgccatttgtattaattgtagaacaaaaataaaaacataaaattaaataagggatcaatc 24844272  T
Q  303 gatctaataa 312  Q
    |||| |||||    
T  24844271 gatccaataa 24844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 22337377 - 22337490
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| |||||  | ||||||| || | ||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||    
T  22337377 gatttatttggcaaacggaggaaaatgtaagggactgaa-tgccatttttattaattgtgggatcaaaatgaaaacatgaaactaaataagggaccaaac 22337475  T
Q  303 gatctaataagcctt 317  Q
     ||||||||||||||    
T  22337476 aatctaataagcctt 22337490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 11502385 - 11502545
Alignment:
Q  161 tggtccaccatagacatcatttt-ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    ||||| ||||||||||||||||  ||||||| ||||| |  | |||||||||||||||| ||  ||||| |||||||||||    | ||||||||||| |    
T  11502385 tggtctaccatagacatcatttgaggttaaacttaactgttgggatttatttggcaaacagagcaaaagttgagggactaattcgcaatttttattaaat 11502484  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaat 320  Q
    |||| | |||||| ||||||||||||||  ||| |||||||||||||||||||||||||||    
T  11502485 gtgggatcaaaatgaaaacatgaaattagttaaaggaccaaacgatctaataagccttaat 11502545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 3413642 - 3413530
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| ||  ||||| |||||||||||||  ||||||||||||||||| | |||||||| |||||| |||||||  ||  |||||||||    
T  3413642 gatttatttggcaaacagagtaaaaggtgagggactaaaacgccatttttattaattgtaggaccaaaatgaaaacacgaaattatttagaggaccaaac 3413543  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  3413542 gatctaataagcc 3413530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 40812665 - 40812731
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  40812665 ttttattaattatggaaccaaaatgaaaacatgaaattaaataagggatcaaacgatctaataagcc 40812731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 3414840 - 3414952
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||| ||| |||||  ||| |||||||||  ||||||||||||||| ||| |||||||| ||||||||||||||  || ||||| ||||    
T  3414840 gatttatttggcaaatggaggaaaaagtgaaggactaaaacgccatttttattaattatgggaccaaaatgaaaacatgaaattatttaggggactaaac 3414939  T
Q  303 gatctaataagcc 315  Q
    | |||||||||||    
T  3414940 gttctaataagcc 3414952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 47456366 - 47456497
Alignment:
Q  188 aaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||      ||||||||||||||| |||||||| ||||| ||||||||    
T  47456366 aaagttaacagtcgagatttatttggcaaacagaagaaaaaatgagggaccaaaaagtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 47456465  T
Q  288 aataagggaccaaacgatctaataagccttaa 319  Q
      | ||||||||   |||| ||||||||||||    
T  47456466 tttgagggaccattggatcaaataagccttaa 47456497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 43459583 - 43459481
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| |||||||||||||||||||||| ||||| |||||||||| |||  |   ||||||||||||||| |||||||| ||||| |||||    
T  43459583 gttaaacttaacagccgagatttatttggcaaacggaggaaaacatgagggacttaaacgcacgttttattaattgtgggaccaaaatgaaaacttgaaa 43459484  T
Q  285 tta 287  Q
    |||    
T  43459483 tta 43459481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 22537669 - 22537556
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| ||   |||  |||||||  |||||  |||||||| ||||||||| |||||||| |||| || ||||||||||||||| |||||    
T  22537669 gatttatttggcaaacagagacaaacgtgagggatcaaaatgtcatttttagtaattgtgggaccaaaatgaaaatataaaattaaataagggagcaaac 22537570  T
Q  303 gatctaataagcct 316  Q
    ||||||||||||||    
T  22537569 gatctaataagcct 22537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 40738844 - 40738957
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaatacca-tttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||||||| ||  ||||  |||||||||||||  ||  |||||||||||| ||| ||||||||||||||||||||||   || |||||||||    
T  40738844 gatttatttggcaaacagagcaaaaagtgagggactaaaacgcctgtttttattaattatgggaccaaaataaaaacatgaaattgtttaggggaccaaa 40738943  T
Q  302 cgatctaataagcc 315  Q
    ||||||||||||||    
T  40738944 cgatctaataagcc 40738957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 32255142 - 32254987
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||| ||||||||| || ||||| ||||| | || ||||||||||||||||||| |||||  |||||||  |||||     |||||||||||    
T  32255142 tggtccaccataaacatcatttggggttaaacttaaccgtcgggatttatttggcaaacggaggaaaaagtgagggatcaaaatgtacgttttattaatt 32255043  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
     ||| |||||||||||||  ||||||||  | |||||||||| ||| |||||||||    
T  32255042 atgggaccaaaataaaaatttgaaattatttgagggaccaaatgatttaataagcc 32254987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 40811521 - 40811397
Alignment:
Q  121 gtttaaattaaaaatattaatagaatctatggtgga-------tgag--tggtccaccatagacatcattttggttaaagttaacagacgagatttattt 211  Q
    ||||||||||||||||||||||||||||||||||||       | ||  |||||||||||||||||||||| ||||||||||||| | |  |||||||||    
T  40811521 gtttaaattaaaaatattaatagaatctatggtggaccactcttaaggttggtccaccatagacatcatttgggttaaagttaaccgtcaggatttattt 40811422  T
Q  212 ggcaaacggaagaaaagatgaggga 236  Q
     | | ||||| ||||| ||||||||    
T  40811421 agtatacggaggaaaatatgaggga 40811397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 24281185 - 24281070
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaatacca-tttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||| ||||||  ||||  |||||||||||||  |   |||||||||||||||| |||||||||||||||||||||||  ||  ||| ||||    
T  24281185 gatttatttggcgaacggataaaaaattgagggactaaaacgcttgtttttattaattgtgggaccaaaataaaaacatgaaattatttagaggatcaaa 24281086  T
Q  302 cgatctaataagcctt 317  Q
     |||||||||| ||||    
T  24281085 tgatctaataaacctt 24281070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 41078908 - 41078753
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||| ||||||||| ||||||||||||| | || |||||||| |||||| ||| |||||  | | |||  |||| |   ||||||| |||||    
T  41078908 tggtccaccatatacatcatttgggttaaagttaaccgtcgggatttattcggcaaatggaggaaaatctaaaggatcaaaagatactttttatcaattg 41078809  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    ||| |||||||| ||||   |||||||| | ||||||||   ||||||||||||||    
T  41078808 tgggaccaaaatgaaaaatggaaattaattgagggaccagcggatctaataagcct 41078753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 24844399 - 24844457
Alignment:
Q  246 catttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacga 304  Q
    |||||||||||||||| | | |||||| ||||||||||||||||||||||| |||||||    
T  24844399 catttttattaattgtaggatcaaaatgaaaacatgaaattaaataagggatcaaacga 24844457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 43460787 - 43460904
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    ||||||||||||||||| ||||  |||||| ||||| |    ||||||||||||||| ||| |||||  ||||||||||||||     ||||||||||||    
T  43460787 tggtccaccatagacataatttgagttaaacttaactgtgaggatttatttggcaaatggaggaaaaagtgagggactaaaatgtacgttttattaattg 43460886  T
Q  261 tggaaccaaaataaaaac 278  Q
    ||| |||||||| |||||    
T  43460887 tgggaccaaaatgaaaac 43460904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 32603045 - 32602925
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||||||||||||||  ||||  |||||||||||||      ||||||||||| ||| |||||||||||||| ||||||||  | | |||||||    
T  32603045 gagatttatttggcaaacggagtaaaaagtgagggactaaaacgtacgttttattaattatgggaccaaaataaaaacttgaaattatttgaaggaccaa 32602946  T
Q  301 acgatctaataagccttaatt 321  Q
      |||| ||||||||| ||||    
T  32602945 tggatcaaataagcctaaatt 32602925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 45455359 - 45455474
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||| ||||||| |  |||||||||||||||||||  ||||  |||||||  |||||     ||||||||||||||| |||||||| ||||  ||||    
T  45455359 ggttaaacttaacagccatgatttatttggcaaacggagaaaaaagtgagggatcaaaatgtacgttttattaattgtgggaccaaaatgaaaatttgaa 45455458  T
Q  284 attaaataagggacca 299  Q
    ||||| ||||||||||    
T  45455459 attaattaagggacca 45455474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 30310231 - 30310137
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggac 297  Q
    ||||||||||||||||||| ||||| |||||| ||| ||||     ||||||||||||||| || ||||| ||||| ||||||||  ||||||||    
T  30310231 gatttatttggcaaacggaggaaaaaatgaggaactcaaatgtacgttttattaattgtgggacaaaaatgaaaacttgaaattatttaagggac 30310137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 30333395 - 30333298
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||| ||||||||  |||| ||||||||| |||| |    ||||||||||||||| |||||||| ||||| ||||||||  || ||||||||    
T  30333395 gatttatttgacaaacggagaaaaaaatgagggaccaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 30333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 534078 - 534165
Alignment:
Q  209 tttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataaggga 296  Q
    |||| |||||| || ||||  |||||||||||   |||||||||||||| ||||  |||||||| |||| |||||||||| |||||||    
T  534078 tttgacaaacgaaacaaaatttgagggactaattcaccatttttattaaatgtgagaccaaaatgaaaagatgaaattaattaaggga 534165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 537418 - 537331
Alignment:
Q  209 tttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataaggga 296  Q
    |||| |||||| || ||||  |||||||||||   |||||||||||||| ||||  |||||||| |||| |||||||||| |||||||    
T  537418 tttgacaaacgaaacaaaatttgagggactaattcaccatttttattaaatgtgagaccaaaatgaaaagatgaaattaattaaggga 537331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 47454465 - 47454363
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    ||||||||||| || || ||||||||||||||||| |  ||||  |||||||| |||||     ||||||||||||||| |||||||| ||| | |||||    
T  47454465 gttaaagttaatagtcgggatttatttggcaaacgaagaaaaacttgagggaccaaaatgtacgttttattaattgtgggaccaaaatgaaagcttgaaa 47454366  T
Q  285 tta 287  Q
    |||    
T  47454365 tta 47454363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 4298823 - 4298710
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| || |||||  ||||||||| |||  |   ||||||||||||||| | |||||||||||| | ||||||  || |||||||       
T  4298823 gatttatttggcaaacagaggaaaaagtgagggacttaaacccacattttattaattgtgggatcaaaataaaaacttaaaattatttaggggaccattg 4298724  T
Q  303 gatctaataagcct 316  Q
    |||| |||||||||    
T  4298723 gatcaaataagcct 4298710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 17837766 - 17837614
Alignment:
Q  163 gtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgt 261  Q
    |||||||||||||||||||| || ||||| ||||| |  | ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||    
T  17837766 gtccaccatagacatcatttggggttaaacttaactgttg-gatttatttggtaaacggaagaaaagatgagggactaaaacgccatttttattaattgt 17837668  T
Q  262 ggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  17837667 ggaaccaaaatgaaaacaataaattaaataagggaccaaacgatctaataagcc 17837614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 6701490 - 6701378
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  6701490 gatttatttggcaaacggaggaaaatgtgagggactaaaataccatttttattaattgtgggaccaaaatgaaaatatgaaattaaataagggaccaaac 6701391  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  6701390 gatctaataagcc 6701378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 17839127 - 17839258
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||| | || ||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||| |||||||| |||||| ||||    
T  17839127 gttaaaattaacggtcgggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaaacaagaaa 17839226  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||||||||||||||    
T  17839227 ttaaataagggaccaaacgatctaataagcct 17839258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 161 - 317
Target Start/End: Original strand, 23397320 - 23397474
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||||||||  ||   |||||| ||||| | || ||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||    
T  23397320 tggtccaccatagacat--ttgaagttaaatttaacggtcgggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattg 23397417  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctt 317  Q
    ||| |||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  23397418 tgggaccaaaatgaaaacacgaaattaaataagggaccaaatgatctaataagcctt 23397474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 29380319 - 29380189
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||| | || |||||||||||||||||||||||||| |||||||||||||  |||||||| |||||||||| |||||||| |||||| ||||    
T  29380319 gttaaaattaacggtcgggatttatttggcaaacggaagaaaaggtgagggactaaaacgccatttttgttaattgtgggaccaaaatgaaaacaagaaa 29380220  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||||||| |||||||||||||    
T  29380219 ttaaataagggaccaaatgatctaataagcc 29380189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 2687930 - 2688043
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||||||  ||||| |||||||||||||  ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  2687930 gatttatttggcaaacggataaaaaggtgagggactaaaacgccatttttattaattgtgggactaaaatgaaaacatgaaattaaataagggaccaaac 2688029  T
Q  303 gatctaataagcct 316  Q
    ||||||||||||||    
T  2688030 gatctaataagcct 2688043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 5187586 - 5187741
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||| ||||||| ||||| ||||||| ||||| | |  |||||||||||||||||||  ||||| | ||| |||||||  |||||||||||||||     
T  5187586 tggtccactatagacaacatttgggttaaacttaaccgtcaggatttatttggcaaacggacaaaaaggtaaggaactaaaacgccatttttattaatta 5187685  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  5187686 tgggaccaaaatgaaaacatgaaattaaataagggaccaaacaatctaataagcct 5187741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 23392324 - 23392211
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| |||||| ||||||||| |||  ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||     
T  23392324 gatttatttggcaaacggaggaaaaggtgagggacttaaacgccatttttattaattgtgggaccaaaatgaaaacacgaaattaaataagggaccaaat 23392225  T
Q  303 gatctaataagcct 316  Q
    ||||||||||||||    
T  23392224 gatctaataagcct 23392211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 6702859 - 6702988
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| |  ||||||||||||||||||| |||||  ||||||| |||||  ||||||||||||||||||| |||||||| |||| ||||||    
T  6702859 gttaaacttaacagtcaggatttatttggcaaacggaggaaaacgtgaggga-taaaacgccatttttattaattgtgggaccaaaatgaaaatatgaaa 6702957  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    |||||||||||||||||||||||||||||||    
T  6702958 ttaaataagggaccaaacgatctaataagcc 6702988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 5186696 - 5186565
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||| ||| |||||   || ||||||||||||||  |||||||| |||||||||||    
T  5186696 gttaaagttaacggtcgggatttatttggcaaacggaggaaaagatgatggattaaaacgtcacttttattaattgtgtgaccaaaatgaaaacatgaaa 5186597  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    |||||||||||| |||| ||||||||||||||    
T  5186596 ttaaataagggatcaaatgatctaataagcct 5186565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 29381696 - 29381849
Alignment:
Q  163 gtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgt 261  Q
    |||||||| ||||||||||| || ||||| ||||| |  | ||||||||||| ||||||| |||||||||| |||||||||   ||||||||||||||||    
T  29381696 gtccaccacagacatcatttggggttaaacttaactgttg-gatttatttggtaaacggaggaaaagatgaaggactaaaacgtcatttttattaattgt 29381794  T
Q  262 ggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    || | |||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  29381795 gggatcaaaatgaaaataagaaattaaataagggaccaaacgatctaataagcct 29381849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 178 - 320
Target Start/End: Complemental strand, 29722799 - 29722656
Alignment:
Q  178 cattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaa 276  Q
    |||||||| ||||| |||||||  ||||||||||||  ||| ||| |||||  |||||||||||||  ||||||||||||||| ||| | |||||| |||    
T  29722799 cattttggattaaatttaacagttgagatttatttgcaaaatggaggaaaatgtgagggactaaaacgccatttttattaattatgggatcaaaatgaaa 29722700  T
Q  277 acatgaaattaaataagggaccaaacgatctaataagccttaat 320  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  29722699 acatgaaattaaataagggaccaaatgatctaataaaccttaat 29722656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 32507032 - 32507145
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| ||  ||||  ||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||||||    
T  32507032 gatttatttggcaaactgagaaaaatgtgagggactaaaacaccatttttattaaatgtgggatcaaaatgaaaacatgaaattaaataagtgaccaaac 32507131  T
Q  303 gatctaataagcct 316  Q
     |||||||||||||    
T  32507132 aatctaataagcct 32507145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 2687340 - 2687242
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    ||||||||||||||||||| |||||  ||| |||||||||  ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  2687340 gatttatttggcaaacggaggaaaatgtgaaggactaaaacgccatttttattaattgtgggatcaaaatgaaaacatgaaattaaataagggaccaaa 2687242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 322
Target Start/End: Original strand, 18346738 - 18346875
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||| ||||||| || |||||||||||||||| ||   |||  |||||||  ||||  ||||||||||||||||||| |||||||| |||| |||||    
T  18346738 ggttaaaattaacagtcg-gatttatttggcaaacagagacaaacgtgagggatcaaaacgccatttttattaattgtgggaccaaaatgaaaatatgaa 18346836  T
Q  284 attaaataagggaccaaacgatctaataagccttaattt 322  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  18346837 attaaataagggaccaaatgatctaataagcctttattt 18346875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 12256612 - 12256703
Alignment:
Q  225 aaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| |||||||||||||  | ||||||||||||||||  |||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  12256612 aaaggtgagggactaaaacgctatttttattaattgtgcgaccaaaacgaaaacatgaaattaaataagggaccaaacaatctaataagcct 12256703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 12256614 - 12256557
Alignment:
Q  250 tttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatct 307  Q
    |||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||    
T  12256614 tttattaattttaggaccaaaataaaaatatgaaattaaataagggaccaaacgatct 12256557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 15730036 - 15730159
Alignment:
Q  204 atttatttggcaaacggaagaaaagatgagggactaaaat-accatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||| |||||||||||||||  |||||||| |||||     |||||||||||||||| |||||||| ||||   |||||||| | |||||||||      
T  15730036 atttatttagcaaacggaagaaaaagtgagggaccaaaatgtatttttttattaattgtgggaccaaaatgaaaaatggaaattaattgagggaccaatg 15730135  T
Q  303 gatctaataagccttaatttaatt 326  Q
     |||||||||||||| ||||||||    
T  15730136 aatctaataagcctttatttaatt 15730159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 6452517 - 6452631
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| ||||| |||||||||| |||      ||||||||||| ||| |||||||| ||||| ||||||||  || ||||||||      
T  6452517 gatttatttggcaaacggaggaaaaaatgagggactcaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaattatttaggggaccaatg 6452616  T
Q  303 gatctaataagcctt 317  Q
    |||| ||||||||||    
T  6452617 gatcaaataagcctt 6452631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 12669853 - 12669759
Alignment:
Q  184 ggttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaa 277  Q
    |||||||||||||||   ||||||||||| ||||||||| |||||  ||| |||||||||    | ||||||||||||||  |||||||||||||    
T  12669853 ggttaaagttaacagttagagatttatttagcaaacggaggaaaaagtgacggactaaaacttgagttttattaattgtgagaccaaaataaaaa 12669759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 233588 - 233684
Alignment:
Q  221 aagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctt 317  Q
    ||||||| ||||||||||||||     |||||||||||| ||| |||||||| ||||  ||||||||  ||| |||||||  |||||| ||||||||    
T  233588 aagaaaaaatgagggactaaaacgtgttttttattaattatgggaccaaaatgaaaaattgaaattatttaaaggaccaattgatctattaagcctt 233684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 6452394 - 6452310
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaa--taccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||||||| |||||  |||||||||||||  ||||  ||||||||||| | | |||||||  ||||| ||||||||    
T  6452394 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtacc--ttttattaattataggaccaaaacgaaaacttgaaatta 6452310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 23201995 - 23201842
Alignment:
Q  164 tccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtgg 263  Q
    ||||||||| ||||||||||  ||||| ||||| |  | ||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||| |||||    
T  23201995 tccaccataaacatcatttttattaaacttaacggttgggatttatttggcaaacggaggaaaaggtgagggaccaaaatgccatttttattaaatgtgg 23201896  T
Q  264 aaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctt 317  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23201895 gaccaaaataaaaacatgaaattaaataagggaccaaacaatctaataagcctt 23201842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 10167535 - 10167422
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||| |||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  10167535 gatttatttgacaaacggaggaaaatatgagggactaaaatgcaatttttattaattgtggtaccaaaatgaaaacatgaaattaaataagggaccaaac 10167436  T
Q  303 gatctaataagcct 316  Q
    ||||||||||||||    
T  10167435 gatctaataagcct 10167422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 10168789 - 10168902
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||| |||||  |||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  10168789 gatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaaacatgaaattaaataatggaccaaac 10168888  T
Q  303 gatctaataagcct 316  Q
    ||||||||||||||    
T  10168889 gatctaataagcct 10168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 33231498 - 33231386
Alignment:
Q  204 atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacg 303  Q
    |||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |    
T  33231498 atttatttggcaaacggtgaaaaagatgagggactaaaacaccatttttattaattgtgggactaaaatgaaaacatgaaattaaataagggaccaaatg 33231399  T
Q  304 atctaataagcct 316  Q
    |||||||||||||    
T  33231398 atctaataagcct 33231386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 54866619 - 54866748
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| |  ||||||||||||||||||| |||||  | ||||||||||| |||||||||||||||||||| |||||||| |||| ||||||    
T  54866619 gttaaacttaacagtcatgatttatttggcaaacggaggaaaacgtaagggactaaaacaccatttttattaattgtgg-accaaaatgaaaatatgaaa 54866717  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    |||||||||||||||||||||||||||||||    
T  54866718 ttaaataagggaccaaacgatctaataagcc 54866748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 50547016 - 50546903
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||| || ||||| || |||||||||||||||||||||||||     
T  50547016 gatttatttggcaaacggtggaaaagatgagggactaaaacgccatttttattaattgtgggactaaaatgaagacatgaaattaaataagggaccaaat 50546917  T
Q  303 gatctaataagcct 316  Q
    ||||||||| ||||    
T  50546916 gatctaatacgcct 50546903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 23203959 - 23204071
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||| ||||||||||||  ||||||||| |||| ||||  ||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||    
T  23203959 gatttaattggcaaacggagaaaaagatgacggaccaaaacgccatttttattaaatgtgggaccaaaatgaaaatatgaaattaaataagggaccaaac 23204058  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  23204059 gatctaataagcc 23204071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 4714130 - 4714015
Alignment:
Q  203 gatttatttggcaaac-ggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||||||  ||| || ||| | ||||| |||||  ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  4714130 gatttatttggcaaaaaggaggataaggtaagggattaaaacgccatttttattaattgtgggaccaaaataaaaatatgaaattaaataagggaccaaa 4714031  T
Q  302 cgatctaataagcctt 317  Q
    ||||||||||||||||    
T  4714030 cgatctaataagcctt 4714015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 7707741 - 7707579
Alignment:
Q  161 tggtccaccatagacatcattttg-gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    ||||| |||| ||||||||||| | ||||||| |||| | |  |||||||||||||||| || |||||  ||| |||||||||   ||||||||||||||    
T  7707741 tggtctaccaaagacatcatttggtgttaaagctaaccgtcaggatttatttggcaaacagaggaaaatgtgatggactaaaacgtcatttttattaatt 7707642  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaattt 322  Q
    |||| |||||||| |||||||||||||||||||||||| ||| |||||||||| ||| |||||    
T  7707641 gtgggaccaaaatgaaaacatgaaattaaataagggactaaaagatctaataaacctaaattt 7707579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 7708776 - 7708909
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaat--aaaaacatga 282  Q
    |||||||||||||   | |||||||||||||||| ||  ||||| |||||||||||||  ||| ||||||||||||| ||||||||||  ||| |||| |    
T  7708776 gttaaagttaacacttgggatttatttggcaaacagagaaaaaggtgagggactaaaacgccacttttattaattgtagaaccaaaatgaaaacacataa 7708875  T
Q  283 aattaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||||||||||||||||    
T  7708876 aattaaataagggaccaaacgatctaataagcct 7708909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 13165605 - 13165494
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||| |||||||| |||||||||| |||| ||||  |||||||||||||||  ||| ||||||| ||||||||||||||||||| |||||||||    
T  13165605 gatttatttgacaaacggaggaaaagatgaaggacgaaaacgccatttttattaattaggga-ccaaaatgaaaacatgaaattaaataatggaccaaac 13165507  T
Q  303 gatctaataagcc 315  Q
    |||||||||||||    
T  13165506 gatctaataagcc 13165494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 33232685 - 33232785
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| ||  |||||||||||||||||||| |||||  |||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  33232685 gttaaagttaacggaaaagatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaataaaaatatgaaa 33232784  T
Q  285 t 285  Q
    |    
T  33232785 t 33232785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 321
Target Start/End: Original strand, 52241143 - 52241279
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | ||  |||||||||||||||||| |||||||||||| |  ||||      ||||||||||||||||| |||||| |||||||||||    
T  52241143 gttaaagttaacggtcggaatttatttggcaaacggaggaaaagatgaggaatcaaaacgtacgttttattaattgtggaatcaaaatgaaaacatgaaa 52241242  T
Q  285 ttaaataagggaccaaacgatctaataagccttaatt 321  Q
    |||||||||||| |||||||| |||| ||||||||||    
T  52241243 ttaaataagggatcaaacgatgtaatgagccttaatt 52241279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 54865214 - 54865109
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||| |||||||| |||||  ||||||||||||| || ||||| ||||||| ||| |||||||| ||||||| |||||||||||||||||||||    
T  54865214 gatttatttgacaaacggaggaaaatgtgagggactaaaacacaatttt-attaattatgggaccaaaatgaaaacataaaattaaataagggaccaaac 54865116  T
Q  303 gatctaa 309  Q
     ||||||    
T  54865115 aatctaa 54865109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 50548229 - 50548334
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| || |||||  |||||||||||||    ||| ||||||||||||| |||||||| |||||||||    ||||||||||||||||    
T  50548229 gatttatttggcaaacagaggaaaatgtgagggactaaaacgttattcttattaattgtgggaccaaaatgaaaacatga----aaataagggaccaaac 50548324  T
Q  303 gatctaataa 312  Q
    ||||||||||    
T  50548325 gatctaataa 50548334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 2312392 - 2312603
Alignment:
Q  117 aacagtttaaattaaaaatattaatagaatctatggtggat---------gagtggtccaccatagacatcattttgg-ttaaagttaacagacgagatt 206  Q
    |||||||||||||||||  |||||||| ||||||||||||          || |||||||||||||||||||||| || ||||| ||||| | |  ||||    
T  2312392 aacagtttaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacggtcatgatt 2312491  T
Q  207 tatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatc 306  Q
    ||||||||||||||| |||||  ||||||||| |||      ||||||||||||||| || |||||  |||| ||||||||  |||||||||||  ||||    
T  2312492 tatttggcaaacggaggaaaaagtgagggacttaaacgtacgttttattaattgtgggactaaaatggaaacttgaaattatctaagggaccaatggatc 2312591  T
Q  307 taataagcctta 318  Q
     |||||||||||    
T  2312592 aaataagcctta 2312603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 390346 - 390230
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||| ||||||| |  ||||||||||||||||||| ||| | ||||||||| ||||||    ||||||||||||||| |||||||| ||||| ||||    
T  390346 ggttaaacttaacagtcaggatttatttggcaaacggaggaagaaatgagggaccaaaatatacgttttattaattgtgggaccaaaatgaaaacttgaa 390247  T
Q  284 attaaataagggaccaa 300  Q
    ||||  || ||||||||    
T  390246 attatttaggggaccaa 390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 1188953 - 1188869
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||||||| |||||  |||||||| |||||     ||||||||||||||| |||||||||||||| ||||||||    
T  1188953 gatttatttggcaaacggaggaaaaagtgagggaccaaaatgtacgttttattaattgtgggaccaaaataaaaacttgaaatta 1188869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 27847788 - 27847704
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||||||||||||||||||||  | ||||||  ||| |    ||||||||||||||| |||||||||||||| ||||||||    
T  27847788 gatttatttggcaaacggaagaaaaattaagggaccgaaaaatacattttattaattgtgggaccaaaataaaaacttgaaatta 27847704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 52240078 - 52239969
Alignment:
Q  121 gtttaaattaaaaatattaatagaatctatggtgga-------tgag--tggtccaccatagacatcattttggttaaagttaacagacgagatttattt 211  Q
    ||||||||||||||||||||||| ||||||||||||       | ||  |||||||||||||||||||||| |||||||||||||    |  ||||||||    
T  52240078 gtttaaattaaaaatattaataggatctatggtggaccactcttaaggttggtccaccatagacatcatttgggttaaagttaacccttggaatttattt 52239979  T
Q  212 ggcaaacgga 221  Q
    ||||||||||    
T  52239978 ggcaaacgga 52239969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 53204471 - 53204363
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||||||  ||||  ||||| |||||||  ||  ||||||||||||||  | |||||| ||||||| ||||||  ||||||| ||||     
T  53204471 gatttatttggcaaacggagaaaaaattgaggaactaaaacgcctgttttattaattgtgagatcaaaatgaaaacattaaattatttaagggatcaaat 53204372  T
Q  303 gatctaata 311  Q
    |||||||||    
T  53204371 gatctaata 53204363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 1829878 - 1829779
Alignment:
Q  188 aaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| ||  ||||||||| |||||| | |||||  ||||||||||||| |    ||||||||||||||| |||||||| ||||| ||||||||    
T  1829878 aaagttaacagtcggaatttatttgacaaacgtaggaaaaagtgagggactaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaatta 1829779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 15449986 - 15450025
Alignment:
Q  117 aacagtttaaattaaaaatattaatagaatctatggtgga 156  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15449986 aacagtttaaattaaaaatattaataggatctatggtgga 15450025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 52963719 - 52963595
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||||||||  ||   |||||||||||||| ||||||||||||| ||||||||  ||||  |||||||| |||| |     |||||||||||    
T  52963719 tggtccaccatagacat--ttggagttaaagttaacagtcgagatttatttgacaaacggagaaaaacttgagggaccaaaacatacgatttattaattg 52963622  T
Q  261 tggaaccaaaataaaaacatgaaatta 287  Q
    ||  |||||||| ||||| ||||||||    
T  52963621 tgagaccaaaatgaaaacttgaaatta 52963595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 393626 - 393728
Alignment:
Q  186 ttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    ||||||||||||| | | |||||||||||||||||||  ||||  |||||||| |||| |   |||||||||||||||| |||||||| ||||  |||||    
T  393626 ttaaagttaacagtccgggatttatttggcaaacggagaaaaaagtgagggaccaaaagatactttttattaattgtgggaccaaaatgaaaatttgaaa 393725  T
Q  285 tta 287  Q
    |||    
T  393726 tta 393728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 53205489 - 53205573
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||||||| |||||  |||||||||||||  ||  |||| |||||||||| || ||||| ||||  ||||||||    
T  53205489 gatttatttggcaaacggaggaaaaagtgagggactaaaacgcctatttttttaattgtgggacgaaaatgaaaatctgaaatta 53205573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 1831269 - 1831383
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||  ||| ||| ||||| ||||||||| |||||     ||||||||||||||| || ||||| ||||| ||||||||| | ||||||||       
T  1831269 gatttatttgaaaaatggaggaaaaaatgagggaccaaaatgtacgttttattaattgtgggactaaaatgaaaacttgaaattaattgagggaccattg 1831368  T
Q  303 gatctaataagcctt 317  Q
    |||| ||||||||||    
T  1831369 gatcaaataagcctt 1831383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 4871416 - 4871454
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  4871416 ttttattaattgtagaaccaaaatgaaaacatgaaatta 4871454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 31965945 - 31965860
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaa 288  Q
    ||||||||||||||||||| |||||  |||||||| |||||     |||| |||||||| | |||| ||||||||| |||||||||    
T  31965945 gatttatttggcaaacggaggaaaaagtgagggaccaaaatgtacattttcttaattgtaggaccagaataaaaacttgaaattaa 31965860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 40792861 - 40792776
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaa 288  Q
    |||||||||||||||||||  ||||  |||||||| |||||     ||||||||||||||| |||||||| ||||| | |||||||    
T  40792861 gatttatttggcaaacggagaaaaatctgagggaccaaaatgtatgttttattaattgtgggaccaaaatgaaaacttaaaattaa 40792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 185 - 321
Target Start/End: Original strand, 17339537 - 17339673
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| |  ||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||| | |||||||| |||| ||||||    
T  17339537 gttaaacttaacagtcaggatttatttggcaaacggaggaaaacgtgagggactaaaatgccatttttattaattgttggaccaaaatgaaaatatgaaa 17339636  T
Q  285 ttaaataagggaccaaacgatctaataagccttaatt 321  Q
    |||||||||||||||||||||||||||||||||||||    
T  17339637 ttaaataagggaccaaacgatctaataagccttaatt 17339673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 13116458 - 13116327
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||| || ||||||||||||||||||| |||||  ||| |||||||||  ||| ||||||||||||||| |||||||| |||||||||||    
T  13116458 gttaaagttaacagtcgggatttatttggcaaacggaggaaaatgtgaaggactaaaacgccacttttattaattgtgggaccaaaatgaaaacatgaaa 13116359  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||||||||||||||    
T  13116358 ttaaataagggaccaaacgatctaataagcct 13116327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 318
Target Start/End: Original strand, 13117597 - 13117754
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||| ||| | ||||||| ||||||| || |  | || |||||||||||||||| || |||||  |||||||||||||  |||||||||||||||     
T  13117597 tggtccactatatagatcatttgggttaaacttgatggtcgggatttatttggcaaacagaggaaaatgtgagggactaaaacgccatttttattaatta 13117696  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctta 318  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13117697 tgggaccaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctta 13117754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 317
Target Start/End: Complemental strand, 17338170 - 17338037
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    |||||||||| |||||   |||||||||||||||||||  ||||  |||||||||||||  ||||||||||||||||||| |||||||| ||||||||||    
T  17338170 ggttaaagttgacagaaacgatttatttggcaaacggagaaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaaacatgaa 17338071  T
Q  284 attaaataagggaccaaacgatctaataagcctt 317  Q
    |||||||||||||||||||||| |||||||||||    
T  17338070 attaaataagggaccaaacgatttaataagcctt 17338037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 42100094 - 42100225
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||| || || |||||||||||||||| ||||| ||||||||  ||||  ||||||||||||||||||  |||||||| |||||||||||    
T  42100094 gttaaagttaacagtcgggaattatttggcaaacggaggaaaatatgagggatcaaaacgccatttttattaattgtgagaccaaaatgaaaacatgaaa 42100193  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    |||||||||||| |||||||||||||||||||    
T  42100194 ttaaataagggatcaaacgatctaataagcct 42100225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 161 - 316
Target Start/End: Complemental strand, 42098715 - 42098560
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||| ||||||||||| || ||||| ||||||| || |||||||||||||||||||   |||  || ||||  ||||  ||| |||||||||||    
T  42098715 tggtccaccaaagacatcatttggggttaaaattaacagtcg-gatttatttggcaaacggagacaaacgtgggggatcaaaacgccacttttattaatt 42098617  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcct 316  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42098616 gtgggaccaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcct 42098560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 4810670 - 4810505
Alignment:
Q  117 aacagtttaaattaaaaatattaatagaatctatggtggatgagt----ggtccaccatagacatcattt-tggttaaagttaacagacgagatttattt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||  | |      |||||||||||||||||||  ||||||||||||| | || |||||||||    
T  4810670 aacagtttaaattaaaaatattaataggatctatggtggaccactcttaattccaccatagacatcatttggggttaaagttaaccgtcgggatttattt 4810571  T
Q  212 ggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaa 277  Q
    ||||||||||  ||||  ||| |||| |||| |    ||||||||||| ||| |||||||||||||    
T  4810570 ggcaaacggagaaaaatttgaaggaccaaaacatacgttttattaattatgggaccaaaataaaaa 4810505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 6397893 - 6397809
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||||||||||||||  |||| |||||||||||||||   | ||||||||||||||| |||||||| |||| |||||||||    
T  6397893 gatttatttggcaaacggagaaaaaaatgagggactaaaatgtaagttttattaattgtgggaccaaaatgaaaatatgaaatta 6397809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 211705 - 211594
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||| |||||||  ||||  | |||||||||||   |  ||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||     
T  211705 gatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaat 211606  T
Q  303 gatctaataagc 314  Q
    ||||||||||||    
T  211605 gatctaataagc 211594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 240551 - 240662
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||| |||||||  ||||  | |||||||||||   |  ||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||     
T  240551 gatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaat 240650  T
Q  303 gatctaataagc 314  Q
    ||||||||||||    
T  240651 gatctaataagc 240662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 725328 - 725217
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||| |||||||  ||||  | |||||||||||   |  ||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||     
T  725328 gatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaat 725229  T
Q  303 gatctaataagc 314  Q
    ||||||||||||    
T  725228 gatctaataagc 725217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 793906 - 794017
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    ||||||||||| |||||||  ||||  | |||||||||||   |  ||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||     
T  793906 gatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaat 794005  T
Q  303 gatctaataagc 314  Q
    ||||||||||||    
T  794006 gatctaataagc 794017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 30787588 - 30787690
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    ||||||||||||| ||  |||||||||||||||||||||||||  |||||||| ||||||    ||||||||||| ||| |||||||| ||||| | |||    
T  30787588 gttaaagttaacatacaggatttatttggcaaacggaagaaaaagtgagggaccaaaatatatattttattaattatgggaccaaaatgaaaacttaaaa 30787687  T
Q  285 tta 287  Q
    |||    
T  30787688 tta 30787690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 41629832 - 41629734
Alignment:
Q  189 aagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||| | || |||||||||||||||||||||||||  |||||||  ||||||    ||||||||||||||  |||||||||||||| ||||||||    
T  41629832 aagttaacggtcgggatttatttggcaaacggaagaaaacttgagggatcaaaatatacgttttattaattgtgagaccaaaataaaaacttgaaatta 41629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 317
Target Start/End: Original strand, 44076329 - 44076483
Alignment:
Q  164 tccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtg 262  Q
    ||||||||||||||||||| || ||||| ||||| |  | ||||||||||||||||||| |||||  ||||| || |||| |    ||||||||||||||    
T  44076329 tccaccatagacatcatttggggttaaacttaactgtagggatttatttggcaaacggaggaaaaattgaggcaccaaaagatacgttttattaattgtg 44076428  T
Q  263 gaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctt 317  Q
    | |||||||||||||  ||||||||  | ||||||||   |||| ||||||||||    
T  44076429 ggaccaaaataaaaatttgaaattatttgagggaccattggatcaaataagcctt 44076483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 28420161 - 28420294
Alignment:
Q  185 gttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||||   |||||||||||| |||||||| ||||| ||||||||||||||      ||||||||||| ||| |||||||| ||||  ||||    
T  28420161 gttaaagttaacagtttgagatttatttgacaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaa 28420260  T
Q  284 attaaataagggaccaaacgatctaataagcctt 317  Q
    ||||  |||||||||||  |||||| ||||||||    
T  28420261 attatttaagggaccaatggatctattaagcctt 28420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 28418935 - 28418803
Alignment:
Q  185 gttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||||   ||||||||||||||||||||| |||||  |||||||||||||      ||||||||||| ||| |||||||| ||||  ||||    
T  28418935 gttaaagttaacagtttgagatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaa 28418836  T
Q  284 attaaataagggaccaaacgatctaataagcct 316  Q
    ||||  |||||||||||  |||||| |||||||    
T  28418835 attatttaagggaccaatggatctattaagcct 28418803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 45281153 - 45281278
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    ||||||||| |||||||||||| | ||||||||||| |  | ||||||||||||||| ||| |||||  ||| |||  |||| |  ||||||||||||||    
T  45281153 tggtccaccgtagacatcatttggattaaagttaactgttgggatttatttggcaaatggaggaaaatctgaaggatcaaaaca-tatttttattaattg 45281251  T
Q  261 tggaaccaaaataaaaacatgaaatta 287  Q
    | | |||||||| ||||| ||||||||    
T  45281252 ttggaccaaaatgaaaacttgaaatta 45281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 26696642 - 26696546
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggacca 299  Q
    ||||||||||||||| ||| |||||  |||||||| |||||     ||||||||||||||| |||||||| ||||| ||||||||| || |||||||    
T  26696642 gatttatttggcaaatggaggaaaaagtgagggaccaaaatgtatgttttattaattgtgggaccaaaatgaaaacttgaaattaattaggggacca 26696546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 32797202 - 32797136
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||||| |||||||| ||||| ||||||||  |||||||||||  |||| ||||||||    
T  32797202 ttttattaattgtgggaccaaaatgaaaacttgaaattatttaagggaccaatagatcaaataagcc 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 22551116 - 22551033
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||| |||  ||||| |||||||| |||| |    ||||||||||||||| |||||||||||||| ||||||||    
T  22551116 gatttatttggcaaatggagaaaaag-tgagggaccaaaagatacgttttattaattgtgggaccaaaataaaaacttgaaatta 22551033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 6398484 - 6398542
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaa 242  Q
    ||||||| ||||||| |  |||||||||| |||||||| ||||| ||||||||||||||    
T  6398484 ggttaaacttaacagtcatgatttatttgacaaacggaggaaaaaatgagggactaaaa 6398542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 29104363 - 29104445
Alignment:
Q  195 acagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaa 277  Q
    ||||| |||||||||||| ||||| || ||||| |||||||||| ||| |    ||||||||||||||| | |||||||||||    
T  29104363 acagatgagatttatttgacaaacagaggaaaaaatgagggacttaaacatacgttttattaattgtgggatcaaaataaaaa 29104445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 212717 - 212802
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| |||||| | |||||  ||||||||||||| |||  |||| |||||||||| || ||||| ||||  ||||||||    
T  212717 agatttatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaatta 212802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 239537 - 239452
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| |||||| | |||||  ||||||||||||| |||  |||| |||||||||| || ||||| ||||  ||||||||    
T  239537 agatttatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaatta 239452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 726340 - 726425
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| |||||| | |||||  ||||||||||||| |||  |||| |||||||||| || ||||| ||||  ||||||||    
T  726340 agatttatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaatta 726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 792892 - 792807
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| |||||| | |||||  ||||||||||||| |||  |||| |||||||||| || ||||| ||||  ||||||||    
T  792892 agatttatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaatta 792807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 798841 - 798926
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| |||||| | |||||  ||||||||||||| |||  |||| |||||||||| || ||||| ||||  ||||||||    
T  798841 agatttatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaatta 798926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 16963962 - 16963830
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||| |   |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  16963962 gttaaagttaacagtcagcatttatttggcaaacggaggaaaagatgagggactaaaacaccatttttattaattgtgggaccaaaatgaaaacatgaaa 16963863  T
Q  285 ttaaataagggaccaaacgatctaataagcctt 317  Q
    |||| |||  |||||||||||||||||||||||    
T  16963862 ttaattaaaagaccaaacgatctaataagcctt 16963830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 15234037 - 15234159
Alignment:
Q  193 taacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataa 292  Q
    |||||| || ||||||||||||||||||| |||||  |||||||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  15234037 taacagtcgggatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaaacatgaaattaaataa 15234136  T
Q  293 gggaccaaacgatctaataagcc 315  Q
    |||||||||||||||||||||||    
T  15234137 gggaccaaacgatctaataagcc 15234159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 15232904 - 15232743
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||| ||| ||||||||| ||||||| ||||| | |  |||||||||||||||| || |||||  |||||||||||||  |||||||||||||||     
T  15232904 tggtccactatatacatcatttgggttaaacttaacggtcatgatttatttggcaaacagaggaaaatgtgagggactaaaacgccatttttattaatta 15232805  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaattt 322  Q
    ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  15232804 tgggaccaaaatgaaaacatgaaattaaataagggaccaaatgatctaataagcctaaattt 15232743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 49802887 - 49803014
Alignment:
Q  189 aagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaa 288  Q
    |||||||| | || |||||||||||||||||||  |||||||||||||||||||   |||||||||||||||||| |||||||| |||||||||||||||    
T  49802887 aagttaaccgtcgggatttatttggcaaacggagaaaaagatgagggactaaaacgtcatttttattaattgtgggaccaaaatgaaaacatgaaattaa 49802986  T
Q  289 ataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||| ||||||    
T  49802987 ataagggaccaaacgatctaacaagcct 49803014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 49801745 - 49801614
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||| ||||||| || |||||||||||||||| ||   |||  |||||||  |||| |||||||||||||||||||| |||||||| |||| || ||    
T  49801745 ggttaaaattaacagtcg-gatttatttggcaaacagagacaaacgtgagggatcaaaacaccatttttattaattgtgggaccaaaatgaaaatataaa 49801647  T
Q  284 attaaataagggaccaaacgatctaataagcct 316  Q
    |||||||||||||||||| ||||||||||||||    
T  49801646 attaaataagggaccaaatgatctaataagcct 49801614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 16965090 - 16965228
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||| ||||||||| || ||||| |||||   ||  |||||||||  |||||||||||||  | |||||||||||   ||||||||||||||    
T  16965090 tggtccaccatatacatcatttggggttaaacttaaccatcggaatttatttgataaacggaagaaaatgtaagggactaaaacgtcatttttattaatt 16965189  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggacc 298  Q
    |||| |||||||| |||| | ||||||||||||||||||    
T  16965190 gtgggaccaaaatgaaaataagaaattaaataagggacc 16965228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 16123397 - 16123313
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||||||||||||| ||||||||||||||    | |||||||||||||||||||||||| ||||| | ||||||    
T  16123397 gatttatttggcaaacggaagaaaaaatgagggactaaaacgtgaattttattaattgtggaaccaaaatgaaaactttaaatta 16123313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 15072755 - 15072881
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgag-atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||  ||  |||||||||||||||||  | |||||||||||||||||| ||||| || |||||| |||||     |||||||||||    
T  15072755 tggtccaccatagacat--ttgaggttaaagttaacagacatggatttatttggcaaacggaggaaaaaataagggaccaaaatgtacgttttattaatt 15072852  T
Q  260 gtggaaccaaaataaaaacatgaaattaa 288  Q
    |||| |||||||| ||||| |||||||||    
T  15072853 gtgggaccaaaatgaaaacttgaaattaa 15072881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 52628860 - 52629000
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||| ||||| |  ||||||||||||||||||||| ||||| ||||||||| ||||      ||||||||||||||| |||||||| ||||| ||||    
T  52628860 ggttaaacttaacggttgagatttatttggcaaacggaggaaaaaatgagggaccaaaaggtacgttttattaattgtgggaccaaaattaaaacttgaa 52628959  T
Q  284 attaaataagggaccaaacgatctaataagccttaatttaa 324  Q
    ||||  ||||||||| |  |||| |||||||| ||| ||||    
T  52628960 attatttaagggaccgatagatcaaataagccataacttaa 52629000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 46111479 - 46111590
Alignment:
Q  188 aaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||| || ||||||||||||||||| | ||||| |||||| || ||||      ||||||||||||||| |||||||||||||| ||||||||    
T  46111479 aaagttaacagtcgggatttatttggcaaacgaaggaaaaaatgaggaaccaaaaggtacgttttattaattgtgggaccaaaataaaaacttgaaatta 46111578  T
Q  288 aataagggacca 299  Q
      ||||||||||    
T  46111579 tttaagggacca 46111590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 42245939 - 42246008
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcctta 318  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||  ||| |||||| |||||||||    
T  42245939 ttttattaattatggaaccaaaataaaaacttgaaattaattaagggattaaatgatctattaagcctta 42246008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 51042350 - 51042445
Alignment:
Q  204 atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||||||||||| ||||| | ||||||||||||    | ||||||||||||||| |||||||| ||||   |||||||| |||||||||||    
T  51042350 atttatttggcaaacgga-gaaaaaaagagggactaaaacgtgagttttattaattgtgggaccaaaatgaaaattggaaattaattaagggaccaa 51042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 24499644 - 24499758
Alignment:
Q  186 ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaat 285  Q
    |||||||| ||||||  ||||||||||| ||||||| |||||  |||||||| ||||    | ||||||||||||||  |||||||| ||||| ||||||    
T  24499644 ttaaagttgacagaccggatttatttggtaaacggaggaaaaagtgagggaccaaaacgtgagttttattaattgtgagaccaaaatgaaaacttgaaat 24499743  T
Q  286 taaataagggaccaa 300  Q
    ||  || ||||||||    
T  24499744 tatttaggggaccaa 24499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 52627580 - 52627502
Alignment:
Q  248 tttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaatttaatt 326  Q
    |||||||||||||||| |||||||| ||||| ||||||||  | ||||||||   |||| |||||||||||| ||||||    
T  52627580 tttttattaattgtgggaccaaaatgaaaacttgaaattatttgagggaccattggatcaaataagccttaagttaatt 52627502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 14470920 - 14470850
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaa 319  Q
    ||||||||||||||| |||||||| ||||| ||||||||  || |||||||   |||| ||||||||||||    
T  14470920 ttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccattggatcaaataagccttaa 14470850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 319
Target Start/End: Complemental strand, 46467297 - 46467140
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacga--gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaat 258  Q
    |||||||||||||||||  || |||||||| ||||||| |||  |||||||||| |||||||| | |||  ||||||||  ||| |  | |||||||| |    
T  46467297 tggtccaccatagacat--ttatggttaaacttaacag-cgagggatttatttgacaaacggaggcaaacctgagggaccgaaacatgagttttattagt 46467201  T
Q  259 tgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaa 319  Q
    | ||| |||||||| ||||| ||||||||| ||| ||| |||  || ||| ||||||||||    
T  46467200 tatgggaccaaaatgaaaacttgaaattaattaaaggatcaattgacctattaagccttaa 46467140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 44999427 - 44999527
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||  ||  |||||||||||||||   | |||||||||||||||| || ||||| |||| |||| ||||  ||| |||||||||||    
T  44999427 tggtccaccatagacat--ttaaggttaaagttaacagctagggatttatttggcaaacagaggaaaaaatga-ggacgaaaacgccaattttattaatt 44999523  T
Q  260 gtgg 263  Q
    ||||    
T  44999524 gtgg 44999527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 46110410 - 46110374
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacgga 221  Q
    |||||||||||||| |||||||||||| |||||||||    
T  46110410 gttaaagttaacagtcgagatttatttagcaaacgga 46110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 50444704 - 50444788
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||||||||| |||| ||||| ||||||||| |||||     ||||||||||||||| || ||||| ||||  ||||||||    
T  50444704 gatttatttggcaatcggaggaaaaaatgagggaccaaaatgtacgttttattaattgtgggactaaaatgaaaatttgaaatta 50444788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 10732093 - 10732247
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||||||||||||| ||||||| ||||| | ||  |||||||||| ||||||| |||||  |||||||||||||  |||||||||||||||     
T  10732093 tggtccaccatagacatcatttgggttaaacttaaccgtcggaatttatttggtaaacggaggaaaatgtgagggactaaaacgccatttttattaatta 10732192  T
Q  261 tggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||| |||||||| ||||||  ||||||||||||||| ||||||||||||||||||    
T  10732193 tgggaccaaaatgaaaacaataaattaaataagggatcaaacgatctaataagcc 10732247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 26887562 - 26887674
Alignment:
Q  204 atttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacg 303  Q
    |||||||||| |||| || ||||||||||||||||||| | ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  26887562 atttatttgggaaacagaggaaaagatgagggactaaattgccatttttattaattgtgggacaaaaatgaaaacatgaaattaaataagggaccaaacg 26887661  T
Q  304 atctaataagcct 316  Q
    |||||||||||||    
T  26887662 atctaataagcct 26887674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 27838044 - 27837921
Alignment:
Q  189 aagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaa 288  Q
    |||||||||| |  ||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||||||| |||||||| |||||||||||||||    
T  27838044 aagttaacagtcaggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatatttattaattgtgggaccaaaatgaaaacatgaaattaa 27837945  T
Q  289 ataagggaccaaacgatctaataa 312  Q
    |||||||| |||||||||||||||    
T  27837944 ataagggatcaaacgatctaataa 27837921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 53614279 - 53614398
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||  || |||||  |||||||||||||  ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  53614279 gatttatttggcaaatagaggaaaatgtgagggactaaaacgccagttttattaattgtgggaccaaaataaaaacaagaaattaaataagggaccaaac 53614378  T
Q  303 gatctaataagccttaattt 322  Q
    ||||||||||||||||||||    
T  53614379 gatctaataagccttaattt 53614398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 41264620 - 41264771
Alignment:
Q  164 tccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtgg 263  Q
    ||||||||| ||||||||||  ||||| ||||| |  |||||||||||||||||||||  ||||| |||||||  ||||  ||||||||||||| ||||     
T  41264620 tccaccataaacatcatttttattaaacttaacggttgagatttatttggcaaacggagaaaaaggtgagggatcaaaacgccatttttattaaatgtga 41264719  T
Q  264 aaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
     |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  41264720 gaccaaaatgaaaacatgaaattaaataagggaccaaacaatctaataagcc 41264771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 35371019 - 35370910
Alignment:
Q  207 tatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatc 306  Q
    |||||| ||||| || |||||| ||| ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  35371019 tatttgacaaacagaggaaaaggtgaaggactaaaacaccatttttattaattgtgggatcaaaatgaaaacatgaaattaaataagggaccaaacgatc 35370920  T
Q  307 taataagcct 316  Q
    ||||||||||    
T  35370919 taataagcct 35370910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 10731013 - 10730882
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||| || |||||||||||||||||||  ||||  ||| |||| ||||| ||||||||||||||| ||| |||||||| |||||| ||||    
T  10731013 gttaaagttaacagtcgggatttatttggcaaacggagaaaaaagtgaaggaccaaaatgccatttttattaattatgggaccaaaatgaaaacaagaaa 10730914  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    || ||||||||| ||||||||| |||||||||    
T  10730913 ttgaataagggatcaaacgatccaataagcct 10730882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 41263766 - 41263635
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||   | |||||| ||| ||||||||  ||||||||| |||| ||||| ||||||||| ||| ||||| |||||||| |||| ||||||    
T  41263766 gttaaagttaacacttgggatttaattgacaaacggagaaaaagatgacggaccaaaatgccatttttaataaatgtgggaccaaaatgaaaatatgaaa 41263667  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    ||||||||||||||||||||||||||||||||    
T  41263666 ttaaataagggaccaaacgatctaataagcct 41263635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 35372164 - 35372279
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataa---gggacca 299  Q
    |||||||||||||||| || |||||| |||||||||||||  ||||||||||||||||||  |||||||| |||||||||||||||| ||   |||||||    
T  35372164 gatttatttggcaaacagaggaaaaggtgagggactaaaacgccatttttattaattgtgagaccaaaatgaaaacatgaaattaaaaaaggggggacca 35372263  T
Q  300 aacgatctaataagcc 315  Q
    ||||||||||||||||    
T  35372264 aacgatctaataagcc 35372279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 53612999 - 53612869
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | || |||||||||||||||| || |||||  ||||||| |||||  ||||||||||||||| ||| |||||||| |||||| ||||    
T  53612999 gttaaagttaacggtcgggatttatttggcaaacagaggaaaatgtgagggaataaaacgccatttttattaattatgggaccaaaatgaaaacaagaaa 53612900  T
Q  285 ttaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||||||  ||||| |||||||||||    
T  53612899 ttaaataagggattaaacgttctaataagcc 53612869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 26886382 - 26886268
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||| ||   |||  |||||||  |||| ||||||||||||||||||   |||||||| |||| ||||||||||||||||||||||||    
T  26886382 gatttatttggcaaacagagacaaacgtgagggatcaaaacaccatttttattaattgttagaccaaaatgaaaatatgaaattaaataagggaccaaac 26886283  T
Q  303 gatctaataagcctt 317  Q
     ||||||||||||||    
T  26886282 aatctaataagcctt 26886268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 18458661 - 18458747
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    ||||||||||||||||||||| |||||  |||||||||||||  | | ||||||||||||||| |||||||||||||| ||||||||    
T  18458661 gagatttatttggcaaacggaggaaaaagtgagggactaaaacgcaagttttattaattgtgggaccaaaataaaaacttgaaatta 18458747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 50810821 - 50810953
Alignment:
Q  185 gttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||||   ||||||||||||||||||||| ||||| ||||||||||||||      ||||||||||| ||| |||||||| ||||  ||||    
T  50810821 gttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaa 50810920  T
Q  284 attaaataagggaccaaacgatctaataagcct 316  Q
    ||||  |||||||||||  |||||| |||||||    
T  50810921 attatttaagggaccaatggatctattaagcct 50810953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 50865043 - 50864911
Alignment:
Q  185 gttaaagttaacagac-gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||||   ||||||||||||||||||||| ||||| ||||||||||||||      ||||||||||| ||| |||||||| ||||  ||||    
T  50865043 gttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaa 50864944  T
Q  284 attaaataagggaccaaacgatctaataagcct 316  Q
    ||||  |||||||||||  |||||| |||||||    
T  50864943 attatttaagggaccaatggatctattaagcct 50864911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 42686149 - 42686264
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||||| ||||| ||  ||||  |||||||||||||| ||  ||||||||||||| | | ||||||||||||||  |||||  ||||||| |||    
T  42686149 gagatttatttgacaaacagagaaaaaagtgagggactaaaatgcctgttttattaattgtaggatcaaaataaaaacatagaattatttaagggatcaa 42686248  T
Q  301 acgatctaataagcct 316  Q
    | ||||||||||||||    
T  42686249 atgatctaataagcct 42686264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 38241034 - 38240903
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||| ||||||| || ||||||||||||||||||| |||||  ||| ||||| |||      ||||||||||||||| |||||||||||||  |||||    
T  38241034 gttaaacttaacagccgggatttatttggcaaacggaggaaaatctgaaggacttaaacgtacgttttattaattgtgggaccaaaataaaaatttgaaa 38240935  T
Q  285 ttaaataagggaccaaacgatctaataagcct 316  Q
    |||   ||||||||||  |||| |||||||||    
T  38240934 ttattcaagggaccaatggatcaaataagcct 38240903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 50809533 - 50809418
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    ||||||||||||||||||||| |||||  |||||||||||||      ||||||||||| ||| |||||||| ||||  ||||||||  |||||||||||    
T  50809533 gagatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50809434  T
Q  301 acgatctaataagcct 316  Q
      |||||| |||||||    
T  50809433 tagatctattaagcct 50809418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 50866329 - 50866444
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    ||||||||||||||||||||| |||||  |||||||||||||      ||||||||||| ||| |||||||| ||||  ||||||||  |||||||||||    
T  50866329 gagatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50866428  T
Q  301 acgatctaataagcct 316  Q
      |||||| |||||||    
T  50866429 tagatctattaagcct 50866444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 3817315 - 3817381
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||| | ||| |||||||| ||||||||||||||  || |||||||||||||||||||||||    
T  3817315 ttttattaaatatgggaccaaaatgaaaacatgaaattagttaggggaccaaacgatctaataagcc 3817381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 40244294 - 40244184
Alignment:
Q  206 ttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgat 305  Q
    |||||||||||||||| |||||  |||||||| |||||     ||||||||||||||  |||||||| ||||| ||||||||  |||||||||||  |||    
T  40244294 ttatttggcaaacggaggaaaatttgagggaccaaaatgtacgttttattaattgtgagaccaaaatgaaaacttgaaattatttaagggaccaatggat 40244195  T
Q  306 ctaataagcct 316  Q
    | |||||||||    
T  40244194 caaataagcct 40244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 27841674 - 27841783
Alignment:
Q  161 tggtccaccatagacatcattttggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattg 260  Q
    |||||||||||| |||| |||| | ||||| |||||   ||  ||||||||| |||||| |||||||| ||| |||||||||  | ||||||||||||||    
T  27841674 tggtccaccataaacataatttagattaaacttaaccatcggaatttatttgacaaacgaaagaaaaggtgaaggactaaaaagctatttttattaattg 27841773  T
Q  261 tggaaccaaa 270  Q
    ||| ||||||    
T  27841774 tgggaccaaa 27841783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 12107992 - 12108083
Alignment:
Q  206 ttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggac 297  Q
    |||||||||||||||| |||||  |||||||| ||||||    |||||||| |||||| |||||||| ||||| ||||||||  ||||||||    
T  12107992 ttatttggcaaacggaggaaaaagtgagggaccaaaatatatgttttattagttgtgggaccaaaatgaaaacttgaaattatttaagggac 12108083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 36176512 - 36176627
Alignment:
Q  203 gatttatttggcaaacggaagaaaaga-tgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||||||| || ||||| | |||||||| |||| |    ||||||||||||||| |||||||| |||||||||||||||  | |||||||      
T  36176512 gatttatttggcaaacagaggaaaaaaatgagggaccaaaacatacattttattaattgtgggaccaaaatgaaaacatgaaattaatcaggggaccatt 36176611  T
Q  302 cgatctaataagcctt 317  Q
     |||| ||||||||||    
T  36176612 ggatcaaataagcctt 36176627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 3811591 - 3811525
Alignment:
Q  249 ttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagcc 315  Q
    ||||||||| | ||| |||||||| ||||||||||||||  || || ||||||||||||||||||||    
T  3811591 ttttattaaatatgggaccaaaatgaaaacatgaaattagttagggtaccaaacgatctaataagcc 3811525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 18197275 - 18197173
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | |  ||||||||||||||||||| ||||| ||||||||| ||||      ||||||||||||||| |||||||| ||||  |||||    
T  18197275 gttaaagttaacggtctggatttatttggcaaacggaggaaaaaatgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaatttgaaa 18197176  T
Q  285 tta 287  Q
    |||    
T  18197175 tta 18197173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 37736089 - 37736181
Alignment:
Q  205 tttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggac 297  Q
    |||||||||||||||||  ||||  |||||||||||||      ||||||||||||||  |||||||| ||||||||||||||  ||||||||    
T  37736089 tttatttggcaaacggagaaaaaagtgagggactaaaacgtacgttttattaattgtgagaccaaaatgaaaacatgaaattatttaagggac 37736181  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 53187668 - 53187555
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaa-ataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||||||||||||||||  |||||||| ||| ||||   |||||||||||||   | |||||| ||||| ||||||||  || |||||||      
T  53187668 gatttatttggcaaacggaagaaaaagtgagggaccaaacatac--attttattaattgtaagatcaaaatgaaaacttgaaattatttaggggaccatt 53187571  T
Q  302 cgatctaataagcctt 317  Q
    ||||| ||||||||||    
T  53187570 cgatcaaataagcctt 53187555  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 53622815 - 53622703
Alignment:
Q  161 tggtccaccatagacatcattt-tggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    ||||||||||||||||||||||  ||||||| ||||| |  | |||||| |||||||||||| |||||  | |||||  ||||||   ||||||||||||    
T  53622815 tggtccaccatagacatcatttggggttaaacttaaccgttgggatttagttggcaaacggaggaaaatctaagggatcaaaatatattttttattaatt 53622716  T
Q  260 gtggaaccaaaat 272  Q
    |||  ||||||||    
T  53622715 gtgcgaccaaaat 53622703  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 37735418 - 37735303
Alignment:
Q  201 gagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
    |||||||||||| |||||| |  |||| |||||||||||||| |    ||||||||||| ||| |||||||| ||||| | ||||||  ||| |||||||    
T  37735418 gagatttatttgacaaacgaagaaaaaaatgagggactaaaacatacgttttattaattatgggaccaaaatgaaaacttaaaattatttaaaggaccaa 37735319  T
Q  301 acgatctaataagcct 316  Q
      |||| |||||||||    
T  37735318 tggatcaaataagcct 37735303  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 28909521 - 28909558
Alignment:
Q  119 cagtttaaattaaaaatattaatagaatctatggtgga 156  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  28909521 cagtttaaattaaaaaaattaataggatctatggtgga 28909558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 10301138 - 10301098
Alignment:
Q  117 aacagtttaaattaaaaatattaatagaatctatggtggat 157  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  10301138 aacagtttaaattaaaataattaataggatctatggtggat 10301098  T

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Target: scaffold0019 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 61962 - 61848
Alignment:
Q  202 agatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||  |||||||| ||||||||||||||  || |||||||||    
T  61962 agatttatttggcaaacggaagaaaagatgagggactaaaacgccatttttattaattatgagaccaaaatgaaaacatgaaattatttaggggaccaaa 61863  T
Q  302 cgatctaataagcct 316  Q
    || ||||||||||||    
T  61862 cgttctaataagcct 61848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 63137 - 63246
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaattaaataagggaccaaac 302  Q
    |||||||||||||||||||  ||||  |||||||||||||  |||| |||||||||||||| |||||||| |||||| |||||||  |   |||||||||    
T  63137 gatttatttggcaaacggagaaaaatgtgagggactaaaacgccatctttattaattgtgggaccaaaatgaaaacacgaaattatttggaggaccaaac 63236  T
Q  303 gatctaataa 312  Q
    ||||||||||    
T  63237 gatctaataa 63246  T

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Target: scaffold0472 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 732 - 863
Alignment:
Q  184 ggttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaa 283  Q
    ||||||||||||||| |  ||||||| ||||||||||| |||||  |  ||| ||| ||  |||||||||||||||| || |||||||||||||||||||    
T  732 ggttaaagttaacagtcaggatttatatggcaaacggaggaaaa--ttggggtctataacgccatttttattaattgagggaccaaaataaaaacatgaa 829  T
Q  284 attaaataagggaccaaacgatctaataagcctt 317  Q
    ||||||||| ||||||||||||||||||| ||||    
T  830 attaaataaaggaccaaacgatctaataaacctt 863  T

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Target: scaffold0077 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 54148 - 54309
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    |||||||||||||||||||||| || ||| | ||||||| |  ||||||||||||||||||| |||||  |||||||| ||||  |   |||||||||||    
T  54148 tggtccaccatagacatcatttggggttatacttaacagtcacgatttatttggcaaacggaggaaaatttgagggaccaaaacgcacgttttattaatt 54247  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaaacgatctaataagccttaatt 321  Q
    |||  |||||||| ||||| ||||||||  | |||||||||  |||| ||||||||| ||||    
T  54248 gtgcgaccaaaattaaaacttgaaattatttgagggaccaatggatcaaataagcctaaatt 54309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 52720 - 52617
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||| | || |||||||||||||||||||  ||||  |||||||| ||||      ||||||||||||||| | |||||| ||||| |||||    
T  52720 gttaaagttaactgtcgggatttatttggcaaacggagaaaaatctgagggaccaaaacgtacattttattaattgtgggatcaaaatgaaaacttgaaa 52621  T
Q  285 ttaa 288  Q
    ||||    
T  52620 ttaa 52617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 300
Target Start/End: Original strand, 43538 - 43678
Alignment:
Q  161 tggtccaccatagacatcattttgg-ttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaatt 259  Q
    ||||||||||||||||||| || || ||||| ||||| | |  || |||||||||||||||| |||||  ||||||||| ||| |    |||||||||||    
T  43538 tggtccaccatagacatcacttggggttaaacttaaccgtcaggacttatttggcaaacggaggaaaaagtgagggacttaaacatacgttttattaatt 43637  T
Q  260 gtggaaccaaaataaaaacatgaaattaaataagggaccaa 300  Q
     ||| |||||||||||||| | ||||||  | |||||||||    
T  43638 atgggaccaaaataaaaacttaaaattatttgagggaccaa 43678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 2464 - 2595
Alignment:
Q  185 gttaaagttaacagacgagatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaa 284  Q
    |||||||||||||| ||  |||||||||| |||| || |||||  | |||||| ||||     |||||||||||||||| |||||||| ||||   ||||    
T  2464 gttaaagttaacagtcggaatttatttggaaaacagaggaaaaactaagggaccaaaaggtactttttattaattgtgggaccaaaatgaaaa-tggaaa 2562  T
Q  285 ttaaataagggaccaaacgatctaataagcctt 317  Q
    |||| | |||||||||  |||||||||||||||    
T  2563 ttaattgagggaccaattgatctaataagcctt 2595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 124079 - 123995
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||||||||||| || |||||  |||||||| |||||     ||||||||||||||| |||||||| ||||| ||||||||    
T  124079 gatttatttggcaaacagaggaaaaagtgagggaccaaaatgtacgttttattaattgtgggaccaaaatgaaaacttgaaatta 123995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 18922 - 18838
Alignment:
Q  203 gatttatttggcaaacggaagaaaagatgagggactaaaataccatttttattaattgtggaaccaaaataaaaacatgaaatta 287  Q
    |||||||||||||||||||  ||||  ||||||||||||| |  | ||||||||| | ||| |||||||| ||||| | ||||||    
T  18922 gatttatttggcaaacggagtaaaaagtgagggactaaaacataagttttattaaatatgggaccaaaatgaaaacttaaaatta 18838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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