View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_13 (Length: 470)
Name: NF11137_high_13
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 44800062 - 44799624
Alignment:
| Q |
17 |
ataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaa |
116 |
Q |
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|||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44800062 |
ataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaa |
44799963 |
T |
|
| Q |
117 |
gtatcttccctttgtcagtaaaatgtgaatgt--atacaagtaattgtgaaggaagcaaacctgataggnnnnnnnncaagacctttggaaatgtacttg |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44799962 |
gtatcttccctttgtcagtaaaatgtgaatgtgcatacaagtaattgtgaaggaagcaaacctgataggttttttttcaagacctttggaaatgtacttg |
44799863 |
T |
|
| Q |
215 |
gccagtaatgttttctagaggttcaaagggtgggtgatggcaattggcaagttatggaggtatccaaaaggacaaaagatcatcgaggtgtagttacatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44799862 |
gccagtaatgttttctagaggttcaaagggtgggtgatggcaattggcaagttatggaggtatccaaaaggacaaaagatcatcgaggtgtagctacatt |
44799763 |
T |
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| Q |
315 |
aatctttgtaaacataaatgattggctttacaaccaaattgcgaaacaaagtagtaaaggatagaggagaaataaacagaaacactgttcggtcaacaac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
44799762 |
aatctttgtaaacataaatgattggctttacaaccaaattgcgaaacaaagtagtaa---atagaggagaaataaacagaaacactgttcggt---caac |
44799669 |
T |
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| Q |
415 |
aacaacaaaaacataaacacttttatctgcttgttttcggttcat |
459 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44799668 |
aacaacaaaaacataaacacttttatctgcttgttttaggttcat |
44799624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 44803904 - 44803747
Alignment:
| Q |
24 |
ggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatctt |
123 |
Q |
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|||||||||||||||||| || |||||||| ||||||| ||||| |||||||||||||||| |||| |||||||||||||||||| ||| || |||||| |
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| T |
44803904 |
ggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtcttacaaaatatctt |
44803805 |
T |
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| Q |
124 |
ccctttgtcagtaaaatgtgaatgtatacaagtaattgtgaaggaagcaaacctgata |
181 |
Q |
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|||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
44803804 |
ccctttaggagtaaaatgtgaatatgtacaaataattgtgaaggaagcaaacctgata |
44803747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 44786731 - 44786614
Alignment:
| Q |
28 |
ctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccct |
127 |
Q |
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|||||||||||||| || ||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||| | |||| |
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| T |
44786731 |
ctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttgctcaggggcgtcataccaaatatataccct |
44786632 |
T |
|
| Q |
128 |
ttgtcagtaaaatgtgaa |
145 |
Q |
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|| ||||||||||||||| |
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| T |
44786631 |
ttatcagtaaaatgtgaa |
44786614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 44792078 - 44791980
Alignment:
| Q |
47 |
tagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
145 |
Q |
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|||||||| ||||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
44792078 |
tagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaagggcgtcataccaaatatattccctttgtaagtaaaatgtgaa |
44791980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 44788388 - 44788292
Alignment:
| Q |
49 |
gctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
145 |
Q |
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|||||| ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||| || ||||| ||| ||||||||||| |
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| T |
44788388 |
gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatatttcctttatcactaaaatgtgaa |
44788292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 44783782 - 44783661
Alignment:
| Q |
24 |
ggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatctt |
123 |
Q |
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|||||||||||||||||| ||||||||| ||||| | ||||| |||||||||||||| |||||| |||||||||| || |||||||||| |||||| |
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| T |
44783782 |
ggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtcataccacatatctt |
44783683 |
T |
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| Q |
124 |
ccctttgtcagtaaaatgtgaa |
145 |
Q |
| |
|
|| || ||||||||||||| |
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| T |
44783682 |
tccattactagtaaaatgtgaa |
44783661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 44796973 - 44796894
Alignment:
| Q |
47 |
tagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccc |
126 |
Q |
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|||||||| ||||||| ||||| ||||||||||| || |||||| |||||||||||||||||||||| || | ||||||| |
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| T |
44796973 |
tagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttgctcaagggcgtcatacaaaatttcttccc |
44796894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 44803713 - 44803641
Alignment:
| Q |
192 |
caagacctttggaaatgtacttggc---cagtaatg----ttttctagaggttcaaagggtgggtgatggcaa |
257 |
Q |
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||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44803713 |
caagacctttggaaatgaacttggctggcagtaatgaatgttttctagaggttcaaagggtgggtgatggcaa |
44803641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 44796872 - 44796826
Alignment:
| Q |
133 |
agtaaaatgtgaatgtatacaagtaattgtgaaggaagcaaacctga |
179 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
44796872 |
agtaaaatgtgaatatgtacaagtaattgtgaaggaagcaaagctga |
44796826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 36681351 - 36681410
Alignment:
| Q |
86 |
gccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
145 |
Q |
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| T |
36681351 |
gccaaatttttgctcgggggcgtcataccaaatatattccctttatcagtaaaatgtgaa |
36681410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 6601619 - 6601672
Alignment:
| Q |
192 |
caagacctttggaaatgtacttggccagtaatgttttctagaggttcaaagggtg |
246 |
Q |
| |
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||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
6601619 |
caagacccttagaaatgaacttggc-agtaatgttttctagaggttcaaagggtg |
6601672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 6609154 - 6609207
Alignment:
| Q |
192 |
caagacctttggaaatgtacttggccagtaatgttttctagaggttcaaagggtg |
246 |
Q |
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||||||||||||||||| |||| || |||||| ||||| |||||||||||||||| |
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| T |
6609154 |
caagacctttggaaatgaacttagc-agtaatattttcaagaggttcaaagggtg |
6609207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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