View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_16 (Length: 449)
Name: NF11137_high_16
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 28239493 - 28239916
Alignment:
| Q |
11 |
caaaggccaaggtggatcaaaaagcaaccttatgaataagattgnnnnnnnnnnnnnnnnnctgctactttccgtaccttacgagtttaacggtatttct |
110 |
Q |
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| T |
28239493 |
caaaggccaaggtggatcaaaaagcaaccttatgaataagattgaaaaaaaggtcaaaaaactgctactttccgtaccttacgagtttaacggtatttct |
28239592 |
T |
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| Q |
111 |
tatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaata |
210 |
Q |
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| T |
28239593 |
tatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaata |
28239692 |
T |
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| Q |
211 |
a---agagnnnnnnnnnnnnatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgcta |
307 |
Q |
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| T |
28239693 |
ataaagagtctctctctctcatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgcta |
28239792 |
T |
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| Q |
308 |
atttaaggactttgtttttgcttttaattgcacttctattcattagctgattagtttcccagtgagtggacaataattgtgtttaatttatttttaataa |
407 |
Q |
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| T |
28239793 |
atttaaggactttgtttttgcttttaattgcacttctattcattagctgattagtctcccagtgagtggacaataattgtgtttaatttatttttaataa |
28239892 |
T |
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| Q |
408 |
tgtcgggatgtgataggagatact |
431 |
Q |
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| T |
28239893 |
tgtctggatgtgataggagatact |
28239916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 47569729 - 47569791
Alignment:
| Q |
271 |
tttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgctttta |
333 |
Q |
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| T |
47569729 |
tttgtggaatgtagattacatgctttctagttttctaatttaaggactatgtttttgctttta |
47569791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 332
Target Start/End: Original strand, 28231896 - 28232125
Alignment:
| Q |
110 |
ttatgattgaactacaa-caaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaa |
208 |
Q |
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| T |
28231896 |
ttatgattgaacaacaaacaaactatttaaagtgggcgtgtttggtgaaacatccaaagacaagttggttgcattctagt---tgatgatgctgaaacaa |
28231992 |
T |
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| Q |
209 |
taaagag-----nnnnnnnnnnnnatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgta----gattacatgctttcta |
299 |
Q |
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| T |
28231993 |
taaggagtctctctctgtgtgtgtgtgtgtaagatatatggcaataaggatgtcacaaaagaacttgtttgtgaaatgtacattaattaaatgctttcta |
28232092 |
T |
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| Q |
300 |
gtttgctaatttaaggactttgtttttgctttt |
332 |
Q |
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| T |
28232093 |
gttttctagttaaatgaccatgtttttgctttt |
28232125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 28326857 - 28326938
Alignment:
| Q |
268 |
ttgtttgtgcaatgtagattacatgctttct-agtttgctaatttaaggactttgtttttgcttttaattgcacttctattc |
348 |
Q |
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| T |
28326857 |
ttgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattc |
28326938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 12541139 - 12541204
Alignment:
| Q |
280 |
tgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttcta |
345 |
Q |
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| T |
12541139 |
tgtagattacatgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttcta |
12541204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 47569524 - 47569567
Alignment:
| Q |
111 |
tatgattgaactacaacaaactatttatagtgggattgtttggt |
154 |
Q |
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| T |
47569524 |
tatgattgaacaacaacaaactatttaaagtgggcttgtttggt |
47569567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 14508454 - 14508381
Alignment:
| Q |
264 |
gaacttgtttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattg |
337 |
Q |
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| T |
14508454 |
gaacttgtttgttgagagtagtttacatgctttctatttttctaattaaaggactatgcttttgcttttcattg |
14508381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 384193 - 384136
Alignment:
| Q |
289 |
catgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat |
346 |
Q |
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| T |
384193 |
catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctat |
384136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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