View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_23 (Length: 393)
Name: NF11137_high_23
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 79 - 346
Target Start/End: Complemental strand, 26191512 - 26191244
Alignment:
| Q |
79 |
aaggacatgttagcacttcgtgttgagcttggtccagattaatttattaaatccactgaagttccacaaaaaggcaactggaatattcaagaaacaaaca |
178 |
Q |
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| T |
26191512 |
aaggacatgttagcacttcgtgttgagcttggtccagattaatttattaaatccactgaagttccacaaaaaggcaactggattattcaagaaacagaca |
26191413 |
T |
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| Q |
179 |
tgtttttcttaggaaaatacatggtttaacnnnnnnnnnnnnnnnnnnnnnnnntcgttgcacataacaaaattgaccatgacattattttagggaaatt |
278 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26191412 |
tgtttttcttaggaaaatacatggtttaacaaaaaagaaaaagagaagaaaaaatggttgcacataacaaaattgaccatgacattattttagggaaatt |
26191313 |
T |
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| Q |
279 |
aagaaacatgtttggat-aaaaaagtgtgcctaacttacaatactaaaaaagaaaagaaagtaacacat |
346 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26191312 |
aagaaacatgtttggataaaaaaagtgtgcctaacttacaatactaaaaaagaaaagaaaggaacacat |
26191244 |
T |
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