View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11137_high_25 (Length: 379)

Name: NF11137_high_25
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11137_high_25
NF11137_high_25
[»] chr1 (17 HSPs)
chr1 (275-323)||(366657-366705)
chr1 (275-323)||(1615036-1615084)
chr1 (275-319)||(28253015-28253059)
chr1 (275-319)||(31436820-31436864)
chr1 (275-323)||(36690595-36690643)
chr1 (275-323)||(36706696-36706744)
chr1 (275-323)||(39010814-39010862)
chr1 (274-323)||(49694697-49694746)
chr1 (275-323)||(3606117-3606165)
chr1 (275-323)||(5315211-5315259)
chr1 (275-323)||(18541074-18541122)
chr1 (275-323)||(27810270-27810318)
chr1 (275-323)||(44112454-44112502)
chr1 (275-323)||(44641926-44641974)
chr1 (275-323)||(50118919-50118967)
chr1 (275-323)||(50226902-50226950)
chr1 (275-319)||(52233248-52233292)
[»] chr3 (26 HSPs)
chr3 (274-323)||(8066354-8066403)
chr3 (275-323)||(37215254-37215302)
chr3 (275-323)||(37303097-37303145)
chr3 (275-323)||(22813072-22813120)
chr3 (275-323)||(26279884-26279932)
chr3 (275-323)||(36442216-36442264)
chr3 (275-323)||(37303383-37303431)
chr3 (275-323)||(42475989-42476037)
chr3 (275-319)||(51410806-51410850)
chr3 (275-305)||(9099508-9099538)
chr3 (278-319)||(39540238-39540279)
chr3 (278-323)||(41369600-41369645)
chr3 (278-323)||(48649583-48649628)
chr3 (275-323)||(108431-108479)
chr3 (275-323)||(5398918-5398966)
chr3 (275-323)||(9027873-9027921)
chr3 (275-323)||(11335325-11335373)
chr3 (279-323)||(28269810-28269854)
chr3 (275-323)||(28300286-28300334)
chr3 (275-323)||(31176463-31176511)
chr3 (275-323)||(43900780-43900828)
chr3 (275-323)||(44334824-44334872)
chr3 (275-323)||(47849672-47849720)
chr3 (275-323)||(51464295-51464343)
chr3 (275-323)||(52678600-52678648)
chr3 (275-323)||(52727471-52727519)
[»] chr8 (15 HSPs)
chr8 (275-323)||(42716320-42716368)
chr8 (275-319)||(3988905-3988949)
chr8 (275-319)||(9738720-9738764)
chr8 (275-323)||(10553106-10553154)
chr8 (275-323)||(35633992-35634040)
chr8 (275-323)||(40102023-40102071)
chr8 (275-323)||(40842014-40842062)
chr8 (275-323)||(42012613-42012661)
chr8 (275-323)||(21418615-21418663)
chr8 (275-319)||(22767132-22767176)
chr8 (275-323)||(29910235-29910283)
chr8 (275-323)||(31806299-31806347)
chr8 (275-323)||(34996383-34996431)
chr8 (283-323)||(40464964-40465004)
chr8 (275-323)||(45101396-45101444)
[»] chr6 (7 HSPs)
chr6 (275-323)||(8395342-8395390)
chr6 (275-323)||(23633346-23633394)
chr6 (275-323)||(29383557-29383605)
chr6 (278-323)||(25166637-25166682)
chr6 (275-323)||(3821378-3821426)
chr6 (275-319)||(27102115-27102159)
chr6 (275-319)||(27143937-27143981)
[»] chr5 (14 HSPs)
chr5 (275-323)||(11666179-11666227)
chr5 (275-323)||(42909719-42909767)
chr5 (276-323)||(8087800-8087847)
chr5 (278-322)||(3141498-3141542)
chr5 (275-323)||(19376155-19376203)
chr5 (275-323)||(20125389-20125437)
chr5 (275-323)||(27392725-27392773)
chr5 (275-323)||(29402182-29402230)
chr5 (275-323)||(32873172-32873220)
chr5 (275-323)||(33393634-33393682)
chr5 (275-323)||(34381012-34381060)
chr5 (275-323)||(36416085-36416133)
chr5 (275-323)||(36581488-36581536)
chr5 (275-323)||(39595272-39595320)
[»] chr4 (24 HSPs)
chr4 (275-323)||(53583151-53583199)
chr4 (278-323)||(38844513-38844558)
chr4 (274-323)||(46794524-46794573)
chr4 (275-323)||(25725717-25725765)
chr4 (275-323)||(45277104-45277152)
chr4 (276-323)||(46911899-46911946)
chr4 (278-323)||(53940078-53940123)
chr4 (275-323)||(149310-149358)
chr4 (275-323)||(1031755-1031803)
chr4 (275-323)||(1562559-1562607)
chr4 (275-323)||(2812616-2812664)
chr4 (275-323)||(4896523-4896571)
chr4 (275-323)||(9472536-9472584)
chr4 (275-323)||(25523221-25523269)
chr4 (275-323)||(30866353-30866401)
chr4 (275-323)||(31147231-31147279)
chr4 (275-323)||(31240648-31240696)
chr4 (275-323)||(35332706-35332754)
chr4 (275-323)||(44170642-44170690)
chr4 (275-323)||(45779314-45779362)
chr4 (275-319)||(51318703-51318747)
chr4 (275-323)||(51397894-51397942)
chr4 (275-323)||(55595949-55595997)
chr4 (275-323)||(56379392-56379440)
[»] chr2 (14 HSPs)
chr2 (275-323)||(34249580-34249628)
chr2 (275-323)||(1889147-1889195)
chr2 (275-323)||(23880095-23880143)
chr2 (275-323)||(32688567-32688615)
chr2 (275-323)||(32749998-32750046)
chr2 (274-323)||(31635833-31635882)
chr2 (275-320)||(34442113-34442158)
chr2 (275-323)||(7086147-7086195)
chr2 (275-323)||(11980651-11980699)
chr2 (275-323)||(12600048-12600096)
chr2 (275-323)||(13104479-13104527)
chr2 (275-323)||(13711061-13711109)
chr2 (275-323)||(14797673-14797721)
chr2 (275-323)||(16754396-16754444)
[»] scaffold0238 (1 HSPs)
scaffold0238 (274-323)||(16386-16435)
[»] chr7 (12 HSPs)
chr7 (275-323)||(17500697-17500745)
chr7 (275-323)||(17552469-17552517)
chr7 (275-323)||(21752658-21752706)
chr7 (275-323)||(28824503-28824551)
chr7 (275-323)||(33684680-33684728)
chr7 (278-323)||(47644708-47644753)
chr7 (275-323)||(9055267-9055315)
chr7 (275-323)||(33212042-33212090)
chr7 (275-323)||(38023447-38023495)
chr7 (275-323)||(41966332-41966380)
chr7 (275-323)||(43025809-43025857)
chr7 (275-323)||(43079655-43079703)
[»] scaffold0504 (1 HSPs)
scaffold0504 (275-323)||(10758-10806)
[»] scaffold0154 (1 HSPs)
scaffold0154 (275-323)||(4315-4363)
[»] scaffold0018 (1 HSPs)
scaffold0018 (275-323)||(36002-36050)
[»] scaffold0014 (1 HSPs)
scaffold0014 (275-323)||(199266-199314)
[»] scaffold0011 (1 HSPs)
scaffold0011 (275-323)||(219687-219735)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 366657 - 366705
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  366657 gagaaatgatatttatacaaccactttctgataactttttgacaacttt 366705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 1615036 - 1615084
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||| ||||||||    
T  1615036 gagaaatgatatttgtacaaccactttctcacaactttttaacaacttt 1615084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 28253015 - 28253059
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||||||| || ||||||||||    
T  28253015 gagaaatgatatttgtacaaccactttctcacaactttttgacaa 28253059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 31436820 - 31436864
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||||||| || ||||||||||    
T  31436820 gagaaatgatatttgtacaaccactttctcacaactttttgacaa 31436864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 36690643 - 36690595
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||||    
T  36690643 gagaaatgatatttgtacaaccaatttctcacaattttttgacaacttt 36690595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 36706744 - 36706696
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||||    
T  36706744 gagaaatgatatttgtacaaccaatttctcacaattttttgacaacttt 36706696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 39010814 - 39010862
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||| ||||||||||| || ||||||||||||||    
T  39010814 gagaaatgatatttgtacagccactttctcacaactttttgacaacttt 39010862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 49694697 - 49694746
Alignment:
Q  274 ggagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||| || ||||| ||| ||| |||||||||||||||||    
T  49694697 ggagaaatgatatttgtaaaaccaatttgtcacaaatttttgacaacttt 49694746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 3606165 - 3606117
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  3606165 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 3606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 5315211 - 5315259
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||||| |||| | |||| ||||||||||||||    
T  5315211 gagaaatgatatttgtacaacctctttattataattttttgacaacttt 5315259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 18541122 - 18541074
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  18541122 gagaaatgatatttgtacaaccattttctaacaactttttgacaacttt 18541074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 27810318 - 27810270
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  27810318 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 27810270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 44112454 - 44112502
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  44112454 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 44112502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 44641974 - 44641926
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  44641974 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 44641926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 50118967 - 50118919
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||| ||||||||| | | || ||||||||||||||    
T  50118967 gagaaatgatatttatataaccactttattacaactttttgacaacttt 50118919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 50226950 - 50226902
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  50226950 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 50226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 52233292 - 52233248
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||    
T  52233292 gagaaatgatatttgtacaaccattttctcacaattttttgacaa 52233248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 8066354 - 8066403
Alignment:
Q  274 ggagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  8066354 ggagaaatgatatttgtacaaccactttctcacaactttttgacaacttt 8066403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 37215302 - 37215254
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||    
T  37215302 gagaaatgatatttatacaaccactttcttacaattttttgacaacttt 37215254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 37303145 - 37303097
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||    
T  37303145 gagaaatgatatttgtacaaccactttctcacaactttttgacaacttt 37303097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 22813072 - 22813120
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  22813072 gagaaatgatatttgtacaaccactttctgacaactttttgacaacttt 22813120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 26279884 - 26279932
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  26279884 gagaaatgatatttgtacaaccactttctgacaactttttgacaacttt 26279932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 36442216 - 36442264
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| || ||||||||||||| || ||||||||||||||    
T  36442216 gagaaatgatatttgtataaccactttctcacaattttttgacaacttt 36442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 37303383 - 37303431
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||  || ||||||||||||||    
T  37303383 gagaaatgatatttgtacaaccactttctcgcaactttttgacaacttt 37303431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 42476037 - 42475989
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||||||    
T  42476037 gagaaatgatatttgcacgaccactttctcataactttttgacaacttt 42475989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 51410806 - 51410850
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||||||| || ||||||||||    
T  51410806 gagaaatgatatttgtacaaccactttctcacaactttttgacaa 51410850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 9099538 - 9099508
Alignment:
Q  275 gagaaatgatatttatacaaccactttctca 305  Q
    |||||||||||||||||||||||||||||||    
T  9099538 gagaaatgatatttatacaaccactttctca 9099508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 39540238 - 39540279
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    ||||||||||| |||||||||||||||| || ||||||||||    
T  39540238 aaatgatatttgtacaaccactttctcacaactttttgacaa 39540279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 41369600 - 41369645
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||||||    
T  41369600 aaatgatatttgtacaaccattttctaataattttttgacaacttt 41369645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 48649583 - 48649628
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||| |||||||||||||| | || ||||||||||||||    
T  48649583 aaatgatatttgtacaaccactttctaacaactttttgacaacttt 48649628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 108431 - 108479
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  108431 gagaaatgatatttgtacaaccactttgtgacaattttttgacaacttt 108479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 5398918 - 5398966
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  5398918 gagaaatgatatttgtacaaccactttgtgacaattttttgacaacttt 5398966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 9027873 - 9027921
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||| ||||||    
T  9027873 gagaaatgatatttgtacaaccactttgtgataactttttgataacttt 9027921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 11335373 - 11335325
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  11335373 gagaaatgatatttgtacaaccattttctaacaactttttgacaacttt 11335325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 28269810 - 28269854
Alignment:
Q  279 aatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||| |||||||||||||||| || ||||| ||||||||    
T  28269810 aatgatatttgtacaaccactttctcacaacttttttacaacttt 28269854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 28300286 - 28300334
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||| | |||| ||||||||||||||    
T  28300286 gagaaatgatatttgtacaaccattttattataattttttgacaacttt 28300334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 31176511 - 31176463
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| |||| |||||||||    
T  31176511 gagaaatgatatttgtacaaccactttgtgataatttttagacaacttt 31176463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 43900828 - 43900780
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  43900828 gagaaatgatatttgtacaaccactttattacaactttttgacaacttt 43900780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 44334872 - 44334824
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  44334872 gagaaatgatatttgtacaaccactttattacaactttttgacaacttt 44334824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 47849672 - 47849720
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||| | |||| ||||||||||||||    
T  47849672 gagaaatgatatttgtacaaccattttgtgataattttttgacaacttt 47849720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 51464343 - 51464295
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  51464343 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 51464295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 52678648 - 52678600
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||| |||| |||||||| ||||| |||| ||||||||||||||    
T  52678648 gagaaatgacatttgtacaaccaatttctaataattttttgacaacttt 52678600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 52727519 - 52727471
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||| |||||| | |||| ||||||||||||||    
T  52727519 gagaaatgatatttgtacaatcactttatgataattttttgacaacttt 52727471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 42716320 - 42716368
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||    
T  42716320 gagaaatgatatttgtacaaccactttttcataattttttgacaacttt 42716368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 3988905 - 3988949
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  3988905 gagaaatgatatttgtacaaccactttctaacaaatttttgacaa 3988949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 9738764 - 9738720
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||||||| || ||||||||||    
T  9738764 gagaaatgatatttgtacaaccactttctcacaattttttgacaa 9738720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 10553154 - 10553106
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  10553154 gagaaatgatatttgtacaaccactttctgacaattttttgacaacttt 10553106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 35634040 - 35633992
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  35634040 gagaaatgatatttctacaaccactttctgacaactttttgacaacttt 35633992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 40102023 - 40102071
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| ||| || ||||||||||||||    
T  40102023 gagaaatgatatttgtacaaccactttttcacaactttttgacaacttt 40102071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 40842014 - 40842062
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  40842014 gagaaatgatatttgtacaaccactttgtgataactttttgacaacttt 40842062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 42012661 - 42012613
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||||||| ||||| | |||| ||||||||||||||    
T  42012661 gagaaatgatatttatacaactactttatgataactttttgacaacttt 42012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 21418663 - 21418615
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | ||  |||||||||||||    
T  21418663 gagaaatgatatttgtacaaccactttctgacaaccttttgacaacttt 21418615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 22767132 - 22767176
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||    
T  22767132 gagaaatgatatttgtacaaccattttctcacaactttttgacaa 22767176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 29910283 - 29910235
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||  ||||||||||| | |||| ||||||||||||||    
T  29910283 gagaaatgatatttgcacaaccactttattataattttttgacaacttt 29910235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 31806299 - 31806347
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  31806299 gagaaatgatatttgtacaaccattttctaacaattttttgacaacttt 31806347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 34996431 - 34996383
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  34996431 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 34996383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 40464964 - 40465004
Alignment:
Q  283 atatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||| ||||| | |||||||||||||||||||    
T  40464964 atatttatacaactactttatgataaatttttgacaacttt 40465004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 45101396 - 45101444
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  45101396 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 45101444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 8395342 - 8395390
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||    
T  8395342 gagaaatgatatttgtacaaccactttctcacaactttttgacaacttt 8395390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 23633394 - 23633346
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  23633394 gagaaatgatatttctacaaccactttattataactttttgacaacttt 23633346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 29383557 - 29383605
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  29383557 gagaaatgatatttgtacaaccactttctgacaactttttgacaacttt 29383605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 25166637 - 25166682
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||    
T  25166637 aaatgatatttatacaaccactttataataattttttgaaaacttt 25166682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 3821378 - 3821426
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  3821378 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 3821426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 27102115 - 27102159
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||    
T  27102115 gagaaatgatatttgtacaaccattttctaataattttttgacaa 27102159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 27143937 - 27143981
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||    
T  27143937 gagaaatgatatttgtacaaccattttctaataattttttgacaa 27143981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 11666179 - 11666227
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  11666179 gagaaatgatatttatataaccattttctcacaaatttttgacaacttt 11666227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 42909719 - 42909767
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||| |||||| |||||||||||||||| || ||||||||||||||    
T  42909719 gagaaattatatttgtacaaccactttctcacaactttttgacaacttt 42909767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 8087800 - 8087847
Alignment:
Q  276 agaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||| |||||| |||||||||||||| |||| ||||||||||||||    
T  8087800 agaaataatatttgtacaaccactttctaataattttttgacaacttt 8087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 3141498 - 3141542
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaactt 322  Q
    |||||||||||||||||||||||| | | || |||||||||||||    
T  3141498 aaatgatatttatacaaccactttgtgacaattttttgacaactt 3141542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 19376203 - 19376155
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||| ||||||    
T  19376203 gagaaatgatatttgtacaaccactttctgacaactttttgataacttt 19376155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 20125389 - 20125437
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  20125389 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 20125437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 27392773 - 27392725
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||||||||| |||  || ||||||||||||||    
T  27392773 gagaaatgatatttgtacaaccacttgctcgcaattttttgacaacttt 27392725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 29402182 - 29402230
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||| |||||| | |||| ||||||||||||||    
T  29402182 gagaaatgatatttgtacaatcactttgtaataattttttgacaacttt 29402230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 32873220 - 32873172
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  32873220 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 32873172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 33393634 - 33393682
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||||| || ||||| ||||||||    
T  33393634 gagaaatgatatttgtacaaccattttctcacaactttttaacaacttt 33393682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 34381012 - 34381060
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  34381012 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 34381060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 36416133 - 36416085
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  36416133 gagaaatgatatttgtacaaccattttctaacaattttttgacaacttt 36416085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 36581536 - 36581488
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| |||| |||||||||    
T  36581536 gagaaatgatatttgtacaaccactttgtgataatttttagacaacttt 36581488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 39595272 - 39595320
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  39595272 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 39595320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 53583199 - 53583151
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||    
T  53583199 gagaaatgatatttgtacaaccactttctcacaactttttgacaacttt 53583151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 38844558 - 38844513
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||    
T  38844558 aaatgatatttgtacaaccactttctcacaactttttgacaacttt 38844513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 46794573 - 46794524
Alignment:
Q  274 ggagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||| |||||||||||||| | || ||||||||||||||    
T  46794573 ggagaaatgatatttgtacaaccactttctgacaactttttgacaacttt 46794524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 25725765 - 25725717
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  25725765 gagaaatgatatttgtacaaccactttctaacaactttttgacaacttt 25725717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 45277152 - 45277104
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||| ||||||||    
T  45277152 gagaaatgatatttgtacaaccactttctcacaacttttttacaacttt 45277104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 46911899 - 46911946
Alignment:
Q  276 agaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||| ||||| |||||||||| || ||||||||||||||    
T  46911899 agaaatgatatttttacaatcactttctcacaactttttgacaacttt 46911946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 53940078 - 53940123
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||    
T  53940078 aaattatatttatacaaccactttatgataagtttttgacaacttt 53940123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 149358 - 149310
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  149358 gagaaatgatatttgtacaaccaatttctaacaattttttgacaacttt 149310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 1031755 - 1031803
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| || |||||||||||    
T  1031755 gagaaatgatatttgtacaaccactttgtgataacttcttgacaacttt 1031803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 1562607 - 1562559
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  1562607 gagaaatgatatttgtacaaccattttctaacaactttttgacaacttt 1562559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 2812664 - 2812616
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||| |||||||||||||||||| | | || ||||||||||||||    
T  2812664 gagaaatggtatttatacaaccactttattacaactttttgacaacttt 2812616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 4896571 - 4896523
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  4896571 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 4896523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 9472584 - 9472536
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||| | ||||| |||| ||||||||||||||    
T  9472584 gagaaatgatatttgtacaactattttctaataattttttgacaacttt 9472536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 25523269 - 25523221
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||| | ||||||| || ||||||||||||||    
T  25523269 gagaaatgatatttgtacaactattttctcacaactttttgacaacttt 25523221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 30866353 - 30866401
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||| || ||| | |||||||||||||||||||    
T  30866353 gagaaatgatatttgtacaatcattttatgataaatttttgacaacttt 30866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 31147231 - 31147279
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  31147231 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 31147279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 31240648 - 31240696
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||| ||||||||    
T  31240648 gagaaatgatatttgtacaaccactttgtgataacttttttacaacttt 31240696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 35332706 - 35332754
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||| ||||||    
T  35332706 gagaaatgatatttgtacaaccactttatgataattttttgataacttt 35332754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 44170690 - 44170642
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||| | |||| ||||||||||||||    
T  44170690 gagaaatgatatttgtacaaccattttgttataattttttgacaacttt 44170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 45779362 - 45779314
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||||||| | ||| | |||| ||||||||||||||    
T  45779362 gagaaatgatatttatacaactattttgttataattttttgacaacttt 45779314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 51318703 - 51318747
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaa 319  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||    
T  51318703 gagaaatgatatttgtacaaccactttgtgataactttttgacaa 51318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 51397942 - 51397894
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  51397942 gagaaatgatatttgtacaaccactttattacaactttttgacaacttt 51397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 55595949 - 55595997
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  55595949 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 55595997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 56379392 - 56379440
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||||||||| |||| || ||||| ||||||||    
T  56379392 gagaaatgatatttgtacaaccacttcctcacaacttttttacaacttt 56379440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 34249580 - 34249628
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||    
T  34249580 gagaaatgatatttgtacaaccactttctcacaactttttgacaacttt 34249628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 1889147 - 1889195
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  1889147 gagaaatgatatttgtacaaccactttctgacaattttttgacaacttt 1889195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 23880095 - 23880143
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  23880095 gagaaatgatatttgtacaaccactttctcacaactttttgataacttt 23880143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 32688615 - 32688567
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  32688615 gagaaatgatatttgtacaaccactttctgacaattttttgacaacttt 32688567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 32749998 - 32750046
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| ||| || ||||||||||||||    
T  32749998 gagaaatgatatttgtacaaccactttttcacaactttttgacaacttt 32750046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 31635882 - 31635833
Alignment:
Q  274 ggagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  31635882 ggagaaatgatatttgtacaaccattttctaacaactttttgacaacttt 31635833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 34442113 - 34442158
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaac 320  Q
    |||||||||||||| |||||||||||| | |||| |||||||||||    
T  34442113 gagaaatgatatttgtacaaccactttatgataattttttgacaac 34442158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 7086195 - 7086147
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||  ||||||||||| || ||||||||||||||    
T  7086195 gagaaatgatatttgtaccgccactttctcacaactttttgacaacttt 7086147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 11980651 - 11980699
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  11980651 gagaaatgatatttgtacaaccattttctaacaactttttgacaacttt 11980699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 12600048 - 12600096
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||| ||||||||||    
T  12600048 gagaaatgatatttgtacaaccactttgtgataattttgtgacaacttt 12600096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 13104479 - 13104527
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||  |||||||||||||||  || ||||||||||||||    
T  13104479 gagaaatgatattcgtacaaccactttctctcaactttttgacaacttt 13104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 13711061 - 13711109
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||| ||||||||||    
T  13711061 gagaaatgatatttgtacaaccactttttgataactttgtgacaacttt 13711109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 14797721 - 14797673
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  14797721 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 14797673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 16754396 - 16754444
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||||||||| | ||||| | || ||||||||||||||    
T  16754396 gagaaatgatatttatacaacaattttctaacaactttttgacaacttt 16754444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 16386 - 16435
Alignment:
Q  274 ggagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  16386 ggagaaatgatatttgtacaaccactttattataattttttgacaacttt 16435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 17500697 - 17500745
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  17500697 gagaaatgatatttgtacaaccactttattataactttttgacaacttt 17500745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 17552517 - 17552469
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||    
T  17552517 gagaaatgatatttgtacaaccactttattataactttttgacaacttt 17552469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 21752658 - 21752706
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| ||||| |||||||||| || ||||||||||||||    
T  21752658 gagaaatgatatttgtacaatcactttctcacaactttttgacaacttt 21752706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 28824503 - 28824551
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||||    
T  28824503 gagaaatgatatttgtacaaccactttctgacaactttttgacaacttt 28824551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 33684680 - 33684728
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||||||| || ||||| ||||||||    
T  33684680 gagaaatgatatttgtacaaccactttctcacaacttttttacaacttt 33684728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 47644708 - 47644753
Alignment:
Q  278 aaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    ||||||||||| |||||||||||| | |||| ||||||||||||||    
T  47644708 aaatgatatttgtacaaccactttattataattttttgacaacttt 47644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 9055267 - 9055315
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  9055267 gagaaatgatatttgtacaaccaatttctaacaactttttgacaacttt 9055315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 33212042 - 33212090
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||||| | || ||||||||||||||    
T  33212042 gagaaatgatatttgtacaaccattttctaacaattttttgacaacttt 33212090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 38023495 - 38023447
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| |||| |||||||||    
T  38023495 gagaaatgatatttgtacaaccactttgtgataatttttagacaacttt 38023447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 41966332 - 41966380
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  41966332 gagaaatgatatttgtacaaccactttgtgacaattttttgacaacttt 41966380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 43025809 - 43025857
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| ||| ||||||||||    
T  43025809 gagaaatgatatttgtacaaccactttttgataattttatgacaacttt 43025857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 43079703 - 43079655
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | |||| |||| |||||||||    
T  43079703 gagaaatgatatttgtacaaccactttgtgataatttttggacaacttt 43079655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 10806 - 10758
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  10806 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 4315 - 4363
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||| ||| | |||| ||||||||||||||    
T  4315 gagaaatgatatttgtacaaccattttatgataactttttgacaacttt 4363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 36002 - 36050
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||| ||||| | |||| ||||||||||||||    
T  36002 gagaaatgatatttgtacaactactttgtgataattttttgacaacttt 36050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 199266 - 199314
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  199266 gagaaatgatatttgtacaaccactttattacaattttttgacaacttt 199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 219735 - 219687
Alignment:
Q  275 gagaaatgatatttatacaaccactttctcataaatttttgacaacttt 323  Q
    |||||||||||||| |||||||||||| | | || ||||||||||||||    
T  219735 gagaaatgatatttgtacaaccactttgtgacaactttttgacaacttt 219687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University