View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_30 (Length: 336)
Name: NF11137_high_30
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 40567703 - 40567399
Alignment:
| Q |
18 |
agcaatacaaccattttgattaacacatcggtatatatcgttg---atttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacg |
114 |
Q |
| |
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|||||||||||||| |||||||| ||| || | |||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |
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| T |
40567703 |
agcaatacaaccatattgattaaaacaccgatttatatcgttgttgatttcaaagtcaataaatcaacattgggttcatactaccaagataattgtaacg |
40567604 |
T |
|
| Q |
115 |
atccagctctgattaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaattgaagaaatattaatgaaaggaa |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |
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| T |
40567603 |
atccagctctgattaataataattgtgtgaattagagactccatataaaggatgagataaaattttatatagtaaattggagaaatattgatgaaagaaa |
40567504 |
T |
|
| Q |
215 |
acaattatgctttagtagtaaaaggaggggcgaaatagtaaaagaggaaacgg------ttaaatgtgattaataagaggaatgaaaatcagaattttca |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567503 |
acaattatgctttagtagtaaaaggaggggcaaaatagtaaaagaggaaagggttaaatttaaatgtgattaataagaggaatgaaaatcagaattttca |
40567404 |
T |
|
| Q |
309 |
ttata |
313 |
Q |
| |
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||||| |
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|
| T |
40567403 |
ttata |
40567399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 36122285 - 36122005
Alignment:
| Q |
18 |
agcaatacaaccattttgattaacacatcggtatatatcgttg---atttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacg |
114 |
Q |
| |
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|||||||||||||| |||||||||||| || | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36122285 |
agcaatacaaccatattgattaacacaccgatttatatcgttgttgatttcaaagtcaataaatcaacattgagttcaaactaccaagacaattgtaata |
36122186 |
T |
|
| Q |
115 |
atccagctctgattaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaattgaagaaatattaatgaaaggaa |
214 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |
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| T |
36122185 |
atccagctctcattaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaattggagaaatattgatgaaaagaa |
36122086 |
T |
|
| Q |
215 |
acaattatgctttagtagtaaaaggaggggcgaaatagtaaaagaggaaacggttaaatgtgattaataagaggaatgaaa |
295 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36122085 |
acaattatgttttagtagtaaaaggaggggcaaaatagtaaaagaggaaagggttaaatgtgattaataagaggaatgaaa |
36122005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 57 - 306
Target Start/End: Original strand, 38811203 - 38811455
Alignment:
| Q |
57 |
gttgatttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacgatccagc---tctgattaataataatggtgtgaattagagac |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
38811203 |
gttgatttcaaagtcaataaatcaacattgacttcaaattaccaagacaattgtaatgatccagcagctctgattaataataatggtgtaaattagagac |
38811302 |
T |
|
| Q |
154 |
tccaaataaaggatgagataaaatttta-----tatagtaaattgaagaaatattaatgaaaggaaacaattatgctttagtagtaaaaggaggggcgaa |
248 |
Q |
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||||||||||||||||||||| |||||| |||| ||||||| ||||||||| || |||||||| ||||||||||||||||||||||||| || |
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| T |
38811303 |
tccaaataaaggatgagataagattttatatattatattaaattggagaaatattgat-----gaaacaataatgctttagtagtaaaaggaggggcaaa |
38811397 |
T |
|
| Q |
249 |
atagtaaaagaggaaacggttaaatgtgattaataagaggaatgaaaatcagaatttt |
306 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38811398 |
atagtaaaagaggaaagggttaaatgtgattaataagaggaatgaaaatcagaatttt |
38811455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 17475833 - 17475658
Alignment:
| Q |
18 |
agcaatacaaccattttgattaacacatcggtatatatcgttgat---ttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacg |
114 |
Q |
| |
|
|||||||||||||| |||||||| ||| || |||||||||| | |||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | |
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| T |
17475833 |
agcaatacaaccatattgattaatacactagtttatatcgttgttgttttcaaaatcaataaatcaacattgacttcaaactgccaagacaactgtaagg |
17475734 |
T |
|
| Q |
115 |
atccagctctgattaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaa |
190 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17475733 |
atccaactctgattaataataatggtgtgaattagagactccaaataaaggatgagataagattttatatagtaaa |
17475658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 55875203 - 55875381
Alignment:
| Q |
18 |
agcaatacaaccattttgattaacacatcggtatatatcgtt---gatttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacg |
114 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55875203 |
agcaatacaaccatattgattaacacactggtttatatcgttattgatttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacg |
55875302 |
T |
|
| Q |
115 |
atccagctctgattaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaattg |
193 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |
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| T |
55875303 |
atccagatctgattaataataatggtgtgaattagagactctaaataaaggatgatataagattttatatagtaaattg |
55875381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 55875388 - 55875462
Alignment:
| Q |
126 |
attaataataatggtgtgaattagagactccaaataaaggatgagataaaattttatatagtaaattgaagaaat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| |
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|
| T |
55875388 |
attaataataattgtgtgaattagagactccaaataaaggataagataagattttatatagtaaattggagaaat |
55875462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 1263059 - 1263123
Alignment:
| Q |
57 |
gttgatttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacgatccagc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1263059 |
gttgatttcaaagtcaataaatcaacattggcttcaaactaccaagacaattgtaacgatccagc |
1263123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 1263224 - 1263284
Alignment:
| Q |
247 |
aaatagtaaaagaggaaacggttaaatgtgatt---aataagaggaatgaaaatcagaatt |
304 |
Q |
| |
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|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1263224 |
aaatagtaaaagagaaaagggttaaatgtgattaaaaataagaggaatgaaaatcagaatt |
1263284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 1263124 - 1263168
Alignment:
| Q |
141 |
gtgaattagagactccaaataaaggatgagataaaattttatata |
185 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1263124 |
gtgaattaaagactccaaataaaggatgagataagattttatata |
1263168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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