View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_42 (Length: 254)
Name: NF11137_high_42
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 12880844 - 12881057
Alignment:
| Q |
15 |
caaaggggtagcaatggatcggaaacaaacaattctgttgaagaaatcaatgcggaactccattggctgtaccttttgaaactatcaatcaaaagacttt |
114 |
Q |
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| T |
12880844 |
caaagggatagcaatggatcggaaacaaacaattctgttgaagaaatcaatacggaactccattggctgtaccttttgaagctatcaatcaaaagacttt |
12880943 |
T |
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| Q |
115 |
taatgctggtgattcttctgagcagttcacggctgatgcaggccctaagaccatagctattcagtctcccatctaaccaaccggcaaaagaaccaaaaac |
214 |
Q |
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| T |
12880944 |
taatgctggtgattcttctgagcagttcacggctgat-------ctaagaccatagctattcagtctcccatccaaccaaccggcaaaagaaccaaaaac |
12881036 |
T |
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| Q |
215 |
tgctcattgggtgatttgtca |
235 |
Q |
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| T |
12881037 |
tgctcattgggtgatttgtca |
12881057 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 6349131 - 6349226
Alignment:
| Q |
115 |
taatgctggtgattcttctgagcagttcacggctgatgcaggccctaagaccatagctattcagtctcccatctaaccaaccggcaaaagaaccaa |
210 |
Q |
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| T |
6349131 |
taatggtggtgattctcctgagcagttcacggatgatgcagtccctaagaccacagctattcagtctcccttcataccaactggaaaaagaaccaa |
6349226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 6359231 - 6359288
Alignment:
| Q |
68 |
ggaactccattggctgtaccttttgaaactatcaatcaaaagacttttaatgctggtg |
125 |
Q |
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| T |
6359231 |
ggaacaccattagctgtacctgttgaaactaccaatgaaaagacttttaatgctggtg |
6359288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6349076 - 6349116
Alignment:
| Q |
19 |
ggggtagcaatggatcggaaacaaacaattctgttgaagaa |
59 |
Q |
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| T |
6349076 |
ggggtagcaatgcatcggaaacaaacaattctattgaagaa |
6349116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 6372674 - 6372728
Alignment:
| Q |
69 |
gaactccattggctgtaccttttgaaactatcaatcaaaagacttttaatgctgg |
123 |
Q |
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| T |
6372674 |
gaacaccatttgctgtaccttttgaaactaccaacggaaagacttttaatgctgg |
6372728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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