View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_45 (Length: 240)
Name: NF11137_high_45
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3732693 - 3732462
Alignment:
| Q |
1 |
atttttaaaatagaaaaatatcattgatcaaaacactagaattgatattacatgatatttctacttatttta-------atgtatttatcaacaaaatta |
93 |
Q |
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| T |
3732693 |
atttttaaaatagaaaaatatcattgatcaaaacactagaattgatattacatgatatttctacttattttgtgaatagatgtatttctcaacaaaatta |
3732594 |
T |
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| Q |
94 |
tacaaatctaaaaattttgcttaccctgatacgtctgaccaaattgccaattcaaaggaacaacaaaaggaaaacccaacgtttttccatcacttgttgt |
193 |
Q |
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| T |
3732593 |
tacaaatttaaaaattttgcttaccctcgtacgtctgaccaaattgccaattcgaaggaacaacaaaaggaaaacccaacatttttccatcacttgttgt |
3732494 |
T |
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| Q |
194 |
aacaagaaatgacaagctttgtcctaacaatt |
225 |
Q |
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| T |
3732493 |
aacaagaaatgacaagctttgtcctaacaatt |
3732462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 3739959 - 3739878
Alignment:
| Q |
76 |
tatttatcaacaaaattatacaaatctaaaaattttgcttaccctgatacgtctgaccaaattgccaattcaaaggaacaac |
157 |
Q |
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| T |
3739959 |
tatttctcaactaaattatacgtatctaaaaatttccattaccctcataggtctgcccaaattgccaattcgaaggagcaac |
3739878 |
T |
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