View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11137_high_49 (Length: 237)

Name: NF11137_high_49
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11137_high_49
NF11137_high_49
[»] chr4 (19 HSPs)
chr4 (1-231)||(51961723-51961952)
chr4 (172-228)||(49287876-49287932)
chr4 (172-228)||(33992644-33992700)
chr4 (172-231)||(19660652-19660711)
chr4 (172-228)||(27528918-27528974)
chr4 (172-228)||(40058975-40059031)
chr4 (172-227)||(43719189-43719244)
chr4 (172-231)||(45787824-45787882)
chr4 (172-222)||(1985854-1985904)
chr4 (182-228)||(34844881-34844927)
chr4 (172-222)||(35229186-35229236)
chr4 (172-233)||(18875634-18875695)
chr4 (172-221)||(46714410-46714459)
chr4 (172-228)||(22625193-22625249)
chr4 (172-228)||(25852232-25852288)
chr4 (172-228)||(32986215-32986271)
chr4 (172-228)||(33696402-33696458)
chr4 (178-222)||(36131639-36131683)
chr4 (172-228)||(52983637-52983693)
[»] chr2 (12 HSPs)
chr2 (172-233)||(41314010-41314071)
chr2 (172-228)||(30466953-30467009)
chr2 (176-229)||(8258919-8258972)
chr2 (172-233)||(36242430-36242491)
chr2 (172-228)||(10582113-10582169)
chr2 (172-228)||(17324784-17324840)
chr2 (172-222)||(27290606-27290656)
chr2 (172-222)||(44946182-44946232)
chr2 (172-229)||(18976547-18976604)
chr2 (172-228)||(33827696-33827752)
chr2 (172-228)||(43374448-43374504)
chr2 (172-228)||(44976277-44976333)
[»] chr8 (17 HSPs)
chr8 (172-228)||(15259529-15259585)
chr8 (172-233)||(4698841-4698902)
chr8 (172-233)||(18532129-18532190)
chr8 (172-228)||(14632976-14633032)
chr8 (172-228)||(28193496-28193552)
chr8 (172-228)||(34237778-34237834)
chr8 (172-228)||(39349278-39349334)
chr8 (172-227)||(264523-264578)
chr8 (172-227)||(651343-651398)
chr8 (172-227)||(837078-837133)
chr8 (173-227)||(20469940-20469994)
chr8 (172-222)||(27746464-27746514)
chr8 (172-228)||(3734746-3734802)
chr8 (172-228)||(4718667-4718723)
chr8 (172-228)||(19471631-19471687)
chr8 (172-228)||(19542555-19542611)
chr8 (172-228)||(19590085-19590141)
[»] chr7 (17 HSPs)
chr7 (172-228)||(21835173-21835229)
chr7 (172-231)||(21217953-21218012)
chr7 (172-233)||(22703508-22703569)
chr7 (172-228)||(2103077-2103133)
chr7 (172-228)||(7175985-7176041)
chr7 (172-228)||(7275299-7275355)
chr7 (172-228)||(7799955-7800011)
chr7 (172-228)||(10091210-10091266)
chr7 (172-228)||(17212075-17212131)
chr7 (172-228)||(22119910-22119966)
chr7 (172-224)||(23854418-23854470)
chr7 (172-228)||(40543033-40543089)
chr7 (172-227)||(21370619-21370674)
chr7 (172-233)||(28089838-28089899)
chr7 (172-228)||(2751293-2751349)
chr7 (172-228)||(11997871-11997927)
chr7 (172-228)||(22299871-22299927)
[»] chr6 (11 HSPs)
chr6 (172-228)||(11448889-11448945)
chr6 (172-228)||(33718581-33718637)
chr6 (179-228)||(1344960-1345009)
chr6 (172-228)||(9238993-9239049)
chr6 (178-228)||(654269-654319)
chr6 (172-228)||(11007183-11007239)
chr6 (180-228)||(14212918-14212966)
chr6 (172-228)||(15360221-15360277)
chr6 (172-228)||(22576085-22576141)
chr6 (172-228)||(34147364-34147420)
chr6 (172-228)||(34159980-34160036)
[»] chr5 (20 HSPs)
chr5 (172-228)||(13038577-13038633)
chr5 (172-228)||(13108572-13108628)
chr5 (172-233)||(15971240-15971301)
chr5 (173-222)||(18207226-18207275)
chr5 (172-228)||(11926625-11926681)
chr5 (172-228)||(15641228-15641284)
chr5 (172-228)||(22392719-22392775)
chr5 (178-233)||(5067325-5067380)
chr5 (172-230)||(1827651-1827709)
chr5 (172-222)||(34049840-34049890)
chr5 (178-228)||(38684232-38684282)
chr5 (172-221)||(25586950-25586999)
chr5 (172-233)||(28614602-28614663)
chr5 (172-233)||(30485846-30485907)
chr5 (173-221)||(6014410-6014458)
chr5 (172-228)||(8484784-8484840)
chr5 (172-220)||(19456340-19456388)
chr5 (172-228)||(33709624-33709680)
chr5 (172-228)||(37495065-37495121)
chr5 (172-228)||(38631084-38631140)
[»] chr3 (22 HSPs)
chr3 (172-228)||(53234033-53234089)
chr3 (172-228)||(26108310-26108366)
chr3 (172-228)||(30807276-30807332)
chr3 (172-228)||(35492929-35492985)
chr3 (172-228)||(40940843-40940899)
chr3 (172-228)||(45272539-45272595)
chr3 (172-228)||(45529877-45529933)
chr3 (172-228)||(46576366-46576422)
chr3 (178-233)||(21362967-21363022)
chr3 (172-227)||(25289838-25289893)
chr3 (178-233)||(38732990-38733045)
chr3 (172-222)||(25379779-25379829)
chr3 (178-228)||(39041975-39042025)
chr3 (178-228)||(52821758-52821808)
chr3 (172-222)||(53424305-53424355)
chr3 (178-231)||(7485645-7485698)
chr3 (181-222)||(19857078-19857119)
chr3 (172-221)||(26174131-26174180)
chr3 (172-233)||(49167074-49167135)
chr3 (172-228)||(8456273-8456329)
chr3 (172-228)||(34492698-34492754)
chr3 (180-228)||(52455772-52455820)
[»] chr1 (21 HSPs)
chr1 (172-228)||(8077665-8077721)
chr1 (172-228)||(14258550-14258606)
chr1 (172-228)||(46113525-46113581)
chr1 (172-231)||(7197366-7197425)
chr1 (172-231)||(23734134-23734193)
chr1 (172-231)||(23741326-23741385)
chr1 (172-231)||(27454986-27455045)
chr1 (172-222)||(7578427-7578477)
chr1 (172-228)||(4621360-4621416)
chr1 (172-228)||(15059525-15059581)
chr1 (172-228)||(24674411-24674467)
chr1 (172-228)||(33905633-33905689)
chr1 (173-228)||(9500478-9500533)
chr1 (172-231)||(37351581-37351640)
chr1 (178-228)||(7766850-7766900)
chr1 (178-222)||(17935793-17935837)
chr1 (172-228)||(19034509-19034565)
chr1 (172-228)||(24122041-24122097)
chr1 (172-228)||(34778360-34778416)
chr1 (176-228)||(36156011-36156063)
chr1 (172-228)||(45859166-45859222)
[»] scaffold0217 (1 HSPs)
scaffold0217 (172-222)||(7438-7488)
[»] scaffold0623 (1 HSPs)
scaffold0623 (172-228)||(1179-1235)
[»] scaffold0366 (2 HSPs)
scaffold0366 (172-228)||(9422-9478)
scaffold0366 (172-221)||(12130-12179)
[»] scaffold0199 (1 HSPs)
scaffold0199 (172-228)||(8530-8586)
[»] scaffold0019 (1 HSPs)
scaffold0019 (173-228)||(161828-161883)
[»] scaffold0459 (1 HSPs)
scaffold0459 (172-221)||(10823-10872)
[»] scaffold0068 (1 HSPs)
scaffold0068 (178-227)||(41768-41817)
[»] scaffold0576 (1 HSPs)
scaffold0576 (172-228)||(5205-5261)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 51961723 - 51961952
Alignment:
Q  1 tcttaactcaaacaaccacattcttatagttggtttccattttatattctcatttaataatgaaataatataattgtgctatgtcaaaaaccaaatttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51961723 tcttaactcaaacaaccacattcttatagttggtttccattttatattctcatttaataatgaaataatataattgtgctatgtcaaaaaccaaatttta 51961822  T
Q  101 tgtaataacacattatgcttgatttattattactactaacactattttaaaaacggaagtagaggtctcatgttggtttgggatcttggaatttgttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |    
T  51961823 tgtaataacacattatgcttgatttattattactactaacactattttaaaaatggaagtagaggtctc-tgtttgtttgggatcttggaatttgttctt 51961921  T
Q  201 ccagatatctcaggttcgattctctctgatg 231  Q
    ||||| || |||||||||||| |||||||||    
T  51961922 ccagagatttcaggttcgattttctctgatg 51961952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 49287876 - 49287932
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  49287876 gttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 49287932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 33992644 - 33992700
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  ||| |||||||||||||||||    
T  33992644 gttggtttgggatcttggagtttgctcctccagaggtcttaggttcgattctctctg 33992700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 19660711 - 19660652
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||||||||||||    
T  19660711 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattctctctgatg 19660652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 27528974 - 27528918
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  27528974 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 27528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 40059031 - 40058975
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||| |||  |||||||||||||||||||||    
T  40059031 gttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctg 40058975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 43719244 - 43719189
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||||||| ||||||||| |||| |||||||||  | ||||||||||||||||||    
T  43719244 gttggtttgagatcttggagtttgctcctccagaggtttcaggttcgattctctct 43719189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 45787882 - 45787824
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| |||| |||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  45787882 gttggcttggaatcttgga-tttgctcctccagagatctcaggttcgattccctctgatg 45787824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 1985854 - 1985904
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  1985854 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 1985904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 34844927 - 34844881
Alignment:
Q  182 gatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||| |||| |||||||||  |||||||||||||||||||||    
T  34844927 gatcttggagtttgctcctccagaggtctcaggttcgattctctctg 34844881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 35229186 - 35229236
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  35229186 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 35229236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 18875695 - 18875634
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||||||||||| || || |||||| || || | |||||||||||||||| ||||||||||    
T  18875695 gttggtttgggattttagagtttgtttcttcaaagatctcaggttcgattccctctgatgtc 18875634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 46714410 - 46714459
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||    
T  46714410 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 46714459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 22625249 - 22625193
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||  |||||||||  ||||||||||||||| |||||    
T  22625249 gttggcttgggatcttggagtttactcctccagaggtctcaggttcgattccctctg 22625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 25852232 - 25852288
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  25852232 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 25852288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 32986215 - 32986271
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||| |||| |||||    
T  32986215 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctg 32986271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33696458 - 33696402
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||| |||| |||||    
T  33696458 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattccctctg 33696402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 36131683 - 36131639
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||||| ||||| || |||||||||||| |||||||||||||||    
T  36131683 ttgggattttggagttcgttcctccagatgtctcaggttcgattc 36131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 52983637 - 52983693
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||| ||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  52983637 gttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctg 52983693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 41314010 - 41314071
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||||| ||||| ||||    
T  41314010 gttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtc 41314071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 30467009 - 30466953
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| ||||| |||||||||| |||  |||||||||||||||||||||    
T  30467009 gttggtttgggatattggagtttgttcctctagaggtctcaggttcgattctctctg 30466953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 8258919 - 8258972
Alignment:
Q  176 gtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctga 229  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||||| ||||||    
T  8258919 gtttgagatcttggagtttgctcctccagatgtctcaggttcgattccctctga 8258972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 36242491 - 36242430
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||||||||||| |||||| |||||||||  ||||||||||||||| ||||| ||||    
T  36242491 gttggcttgggatcttgaaatttgctcctccagaggtctcaggttcgattccctctggtgtc 36242430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 10582169 - 10582113
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  10582169 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 10582113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 17324784 - 17324840
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    |||||||||| |||||||| |||| |||||||||  ||||||||||||||| |||||    
T  17324784 gttggtttggtatcttggagtttgctcctccagaggtctcaggttcgattccctctg 17324840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 27290606 - 27290656
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  27290606 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 27290656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 44946232 - 44946182
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  44946232 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 44946182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 18976604 - 18976547
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctga 229  Q
    ||||| ||||||||||||| |||| |||||||||  ||||| ||||||||| ||||||    
T  18976604 gttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctctga 18976547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33827752 - 33827696
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| |||||||||||||  ||| |||||||||  ||||||||||||||| |||||    
T  33827752 gttggcttgggatcttggagattgctcctccagaggtctcaggttcgattccctctg 33827696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 43374504 - 43374448
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||| ||||  ||||||||||||||| |||||    
T  43374504 gttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctg 43374448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 44976333 - 44976277
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||  |||| |||||||||  ||||||||||||||| |||||    
T  44976333 gttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctctg 44976277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 15259585 - 15259529
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  15259585 gttggtttgggatcttggattttgctcctccagaggtctcaggttcgattccctctg 15259529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 4698902 - 4698841
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||||||||||||||||| |||| |||| ||||  ||||||||||||||| ||||| ||||    
T  4698902 gttggtttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgtc 4698841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 18532129 - 18532190
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||| ||||||    
T  18532129 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctcagatgtc 18532190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 14632976 - 14633032
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  14632976 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 14633032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28193496 - 28193552
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  28193496 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 28193552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 34237834 - 34237778
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  34237834 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 34237778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 39349278 - 39349334
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  39349278 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 39349334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 264578 - 264523
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||| ||||    
T  264578 gttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctct 264523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 651343 - 651398
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||| ||||    
T  651343 gttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctct 651398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 837078 - 837133
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||| ||||    
T  837078 gttggcttgggatcttcgagtttgctcctccagagatctcaggttcgattccctct 837133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 20469940 - 20469994
Alignment:
Q  173 ttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    |||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||    
T  20469940 ttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctct 20469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 27746514 - 27746464
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||||||||||||||||| |||| ||||||| |  |||||||||||||||    
T  27746514 gttggtttgggatcttggagtttgctcctccaaaggtctcaggttcgattc 27746464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 3734802 - 3734746
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  3734802 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 3734746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 4718667 - 4718723
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||| ||||  ||||||||||||||| |||||    
T  4718667 gttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctg 4718723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 19471631 - 19471687
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  19471631 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19471687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 19542555 - 19542611
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  19542555 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19542611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 19590141 - 19590085
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  19590141 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 19590085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 21835173 - 21835229
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  21835173 gttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctctg 21835229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 21218012 - 21217953
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||||||    
T  21218012 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctgatg 21217953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 22703508 - 22703569
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||| ||||    
T  22703508 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtc 22703569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 2103077 - 2103133
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  2103077 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 2103133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 7176041 - 7175985
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  7176041 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7175985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 7275299 - 7275355
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  7275299 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7275355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 7800011 - 7799955
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  7800011 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7799955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 10091210 - 10091266
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  10091210 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 10091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 17212075 - 17212131
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||| ||||||||||    
T  17212075 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcaattctctctg 17212131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 22119910 - 22119966
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  22119910 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 22119966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 23854418 - 23854470
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctc 224  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||||    
T  23854418 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctc 23854470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 40543089 - 40543033
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  40543089 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 40543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 21370619 - 21370674
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||||||||||||||||| |||  |||| ||||| ||||||||||||||| ||||    
T  21370619 gttggtttgggatcttggagtttactccttcagatgtctcaggttcgattccctct 21370674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 28089838 - 28089899
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||| ||||||||| |||| |||||||||| ||||||||||||| | ||||| ||||    
T  28089838 gttggcttgagatcttggagtttgctcctccagatgtctcaggttcgataccctctggtgtc 28089899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 2751293 - 2751349
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  2751293 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 2751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11997871 - 11997927
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||| |||  ||||||||||||||| |||||    
T  11997871 gttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctg 11997927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 22299871 - 22299927
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||| ||||||||| |||||    
T  22299871 gttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctctg 22299927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11448889 - 11448945
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  11448889 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 11448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33718637 - 33718581
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||  | ||||||| ||||||||||||||||||||||    
T  33718637 gttggtttgggatcttggagtttacttctccagagatctcaggttcgattctctctg 33718581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 1344960 - 1345009
Alignment:
Q  179 tgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    |||||||||||| ||||||||||||||  ||||||||||||||| |||||    
T  1344960 tgggatcttggagtttgttcctccagaggtctcaggttcgattccctctg 1345009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 9238993 - 9239049
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  9238993 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 9239049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 654319 - 654269
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  654319 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 654269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11007183 - 11007239
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  11007183 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattcactctg 11007239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 14212918 - 14212966
Alignment:
Q  180 gggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  14212918 gggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 14212966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 15360277 - 15360221
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  15360277 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 15360221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 22576085 - 22576141
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||| |||||||| |||||    
T  22576085 gttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctg 22576141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 34147364 - 34147420
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| || ||||||  ||||||||||||||| |||||    
T  34147364 gttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctctg 34147420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 34159980 - 34160036
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| || ||||||  ||||||||||||||| |||||    
T  34159980 gttggcttgggatcttggagtttgctcttccagaagtctcaggttcgattccctctg 34160036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 13038633 - 13038577
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  13038633 gttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 13038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 13108628 - 13108572
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  13108628 gttggcttgggatcttggagtttgctcctccagagatctcaggttcgattccctctg 13108572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 15971301 - 15971240
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||  ||||||||||    
T  15971301 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatttcctctgatgtc 15971240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 18207226 - 18207275
Alignment:
Q  173 ttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||    
T  18207226 ttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattc 18207275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 11926681 - 11926625
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  11926681 gttggtttgggatcttggagtttgctcctccagaggtctcaggttagattccctctg 11926625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 15641284 - 15641228
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  15641284 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 15641228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 22392719 - 22392775
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  22392719 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 22392775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 5067325 - 5067380
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    |||||||||| || |||| ||||||||| ||||||||||||||| |||||| ||||    
T  5067325 ttgggatcttcgagtttgctcctccagagatctcaggttcgattttctctggtgtc 5067380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 1827709 - 1827651
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgat 230  Q
    ||||| ||| ||||||||| |||| |||||||||  ||||||||||||||| |||||||    
T  1827709 gttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctgat 1827651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 34049840 - 34049890
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  34049840 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 34049890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 38684232 - 38684282
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  38684232 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 38684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 25586950 - 25586999
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||    
T  25586950 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 25586999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 28614663 - 28614602
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||| |||||| || |||||||||||| | |||||||||||||||  ||||||||||    
T  28614663 gttggcttgagatcttagagtttgttcctccaaagatctcaggttcgattacctctgatgtc 28614602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 30485846 - 30485907
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||||||||||||| |||| |||| ||||  ||||||||||||||| ||||| ||||    
T  30485846 gttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattcactctggtgtc 30485907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6014458 - 6014410
Alignment:
Q  173 ttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    |||| ||||||||||||| |||| | ||||||| |||||||||||||||    
T  6014458 ttggcttgggatcttggagtttgcttctccagagatctcaggttcgatt 6014410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 8484840 - 8484784
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  8484840 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 8484784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 19456388 - 19456340
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgat 220  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||    
T  19456388 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgat 19456340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33709680 - 33709624
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||| ||||||||| |||||    
T  33709680 gttggcttgggatcttggagtttgctcctccagaggtctcaagttcgattccctctg 33709624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 37495065 - 37495121
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||| ||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  37495065 gttggcttgagatcttggagtttgctcctccagaggtctcaggttcgattccctctg 37495121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 38631140 - 38631084
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||| |||||||| |||||    
T  38631140 gttggcttgggatcttggagtttgctcctccagaggtctcagattcgattccctctg 38631084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 53234089 - 53234033
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  53234089 gttggcttgggatcttggagtttgctcctccagaagtctcaggttcgattctctctg 53234033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 26108310 - 26108366
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  26108310 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 26108366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 30807332 - 30807276
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  30807332 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 30807276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 35492929 - 35492985
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  35492929 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 35492985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 40940843 - 40940899
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  40940843 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 40940899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 45272595 - 45272539
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||| |||||| |||||||| |||||    
T  45272595 gttggcttgggatcttggagtttgctcctccagatgtctcagtttcgattccctctg 45272539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 45529933 - 45529877
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  45529933 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 45529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 46576366 - 46576422
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  46576366 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 46576422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 21362967 - 21363022
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| ||||| ||||    
T  21362967 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctggtgtc 21363022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 25289893 - 25289838
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||    
T  25289893 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctct 25289838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 38732990 - 38733045
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    |||| |||||||| ||||||||||||||  |||||||| |||||||||||| ||||    
T  38732990 ttggaatcttggagtttgttcctccagaggtctcaggtccgattctctctgttgtc 38733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 25379779 - 25379829
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  25379779 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 25379829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 39042025 - 39041975
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| |||| |||||||||  ||||| |||||||||||||||    
T  39042025 ttgggatcttggagtttgctcctccagaggtctcaagttcgattctctctg 39041975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 52821808 - 52821758
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  52821808 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 52821758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 53424355 - 53424305
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||    
T  53424355 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattc 53424305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 7485698 - 7485645
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||||||||||| |||| ||||||| |  ||||||||||||||| ||||||||    
T  7485698 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctgatg 7485645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 19857078 - 19857119
Alignment:
Q  181 ggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    |||||||||| |||| |||||||||| |||||||||||||||    
T  19857078 ggatcttggagtttgctcctccagatgtctcaggttcgattc 19857119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 26174131 - 26174180
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||    
T  26174131 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 26174180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 49167074 - 49167135
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatgtc 233  Q
    ||||| ||| ||||||||| |||| ||||||| | || ||||||||||||||||||| ||||    
T  49167074 gttggcttgagatcttggagtttgctcctccaaagatatcaggttcgattctctctggtgtc 49167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 8456329 - 8456273
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| |||||||||| || |||| |||||||||  ||||||||||||||| |||||    
T  8456329 gttggcttgggatcttcgagtttgctcctccagaggtctcaggttcgattccctctg 8456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 34492754 - 34492698
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||| ||||||||| |||||    
T  34492754 gttggcttgggatcttggagtttgctcctccagaggtctcatgttcgattccctctg 34492698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 52455820 - 52455772
Alignment:
Q  180 gggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  52455820 gggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 52455772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 8077665 - 8077721
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  8077665 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattctctctg 8077721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 14258606 - 14258550
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| ||||||||||||||| |||| |||||||||| |||||    
T  14258606 gttggcttgggatcttggagtttgttcctccagatgtctctggttcgattccctctg 14258550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 46113581 - 46113525
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  46113581 gttggtttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 46113525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 7197425 - 7197366
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||||||    
T  7197425 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctgatg 7197366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 23734134 - 23734193
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| |||||||||| ||||||| |||||||||  ||||||||||||||| ||||||||    
T  23734134 gttggcttgggatcttagaatttgctcctccagaggtctcaggttcgattccctctgatg 23734193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 23741326 - 23741385
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| |||||||||| ||||||| |||||||||  ||||||||||||||| ||||||||    
T  23741326 gttggcttgggatcttagaatttgctcctccagaggtctcaggttcgattccctctgatg 23741385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 27455045 - 27454986
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| ||||||||    
T  27455045 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattcactctgatg 27454986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 7578427 - 7578477
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||||||||||    
T  7578427 gttggcttgggatcttggagtttgttcctccagaggtctcaggttcgattc 7578477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 4621416 - 4621360
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  4621416 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 4621360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 15059581 - 15059525
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| |||| |||||||| |||| |||||||||  |||||||||||||||||||||    
T  15059581 gttggcttggaatcttggagtttgctcctccagaggtctcaggttcgattctctctg 15059525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 24674411 - 24674467
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  24674411 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 24674467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 33905689 - 33905633
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  33905689 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 33905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 9500533 - 9500478
Alignment:
Q  173 ttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    |||| ||||||||||||| |||| |||| ||||  |||||||||||||||||||||    
T  9500533 ttggcttgggatcttggagtttgctccttcagaggtctcaggttcgattctctctg 9500478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 37351640 - 37351581
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctgatg 231  Q
    ||||| ||||||||||||| |||| ||||||| || |||||||||||||||  |||||||    
T  37351640 gttggcttgggatcttggagtttgctcctccaaatgtctcaggttcgattccttctgatg 37351581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 7766900 - 7766850
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  7766900 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 7766850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 17935793 - 17935837
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||||||||||| |||| |||||||||  |||||||||||||||    
T  17935793 ttgggatcttggagtttgctcctccagaggtctcaggttcgattc 17935837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 19034565 - 19034509
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||||||| |||||||||| | |  | |||||||||||| ||||||    
T  19034565 gttggtttgggatcttggagtttgttcctcaaaaggtttcaggttcgattatctctg 19034509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 24122041 - 24122097
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||  |||| |||||||||  ||||||||||||||| |||||    
T  24122041 gttggcttgggatcttggggtttgctcctccagaggtctcaggttcgattccctctg 24122097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 34778360 - 34778416
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| |||||    
T  34778360 gttggcttgggatcttggagtttgctcctccagaggtctcaggtttgattccctctg 34778416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 36156063 - 36156011
Alignment:
Q  176 gtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||||||||||||| |||| |||||||||  | ||||||||||||| |||||    
T  36156063 gtttgggatcttggagtttgctcctccagaggtgtcaggttcgattccctctg 36156011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 45859222 - 45859166
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||| |||  ||||||||||||||| |||||    
T  45859222 gttggcttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctg 45859166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 7488 - 7438
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattc 222  Q
    ||||| ||||||||||||| |||| ||||||||| ||||||||||||||||    
T  7488 gttggcttgggatcttggagtttgctcctccagagatctcaggttcgattc 7438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 1235 - 1179
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  1235 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 1179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 9478 - 9422
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  9478 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 9422  T

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Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 12179 - 12130
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||    
T  12179 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 12130  T

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Target: scaffold0199 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 8586 - 8530
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||||||||| ||||||    
T  8586 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattatctctg 8530  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 161828 - 161883
Alignment:
Q  173 ttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    |||| ||||||||||||| |||| |||||||||  ||||||||||||||| |||||    
T  161828 ttggcttgggatcttggagtttgctcctccagaggtctcaggttcgattccctctg 161883  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 10872 - 10823
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgatt 221  Q
    ||||| ||||||||||||| |||| |||||||||  ||||||||||||||    
T  10872 gttggcttgggatcttggagtttgctcctccagaggtctcaggttcgatt 10823  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 41817 - 41768
Alignment:
Q  178 ttgggatcttggaatttgttcctccagatatctcaggttcgattctctct 227  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||| ||||    
T  41817 ttgggatcttggagtttgctcctccagaggtctcaggttcgattccctct 41768  T

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Target: scaffold0576 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 5261 - 5205
Alignment:
Q  172 gttggtttgggatcttggaatttgttcctccagatatctcaggttcgattctctctg 228  Q
    ||||| ||||||||||||| |||| ||||||| |  ||||||||||||||| |||||    
T  5261 gttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctg 5205  T

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