View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_52 (Length: 229)
Name: NF11137_high_52
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 27560620 - 27560416
Alignment:
| Q |
1 |
atgtccagtcccgggtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaa |
100 |
Q |
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| T |
27560620 |
atgtccagtcccgggtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaa |
27560521 |
T |
|
| Q |
101 |
gccggttttgtaaggcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttagacctctttgaattgaatgacttcaaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27560520 |
gccggttttgtaaggcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgacttcaaatat |
27560421 |
T |
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| Q |
201 |
catgt |
205 |
Q |
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||||| |
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| T |
27560420 |
catgt |
27560416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 36668142 - 36667934
Alignment:
| Q |
1 |
atgtccagtcccgggtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaa |
100 |
Q |
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||||||| ||| | |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
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| T |
36668142 |
atgtccaatcctgtgtgtgtttgagagtctaacgtttgatgcgatttggtctgaaaacatatttataattgttgggaagtcatcactcatcaccttacag |
36668043 |
T |
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| Q |
101 |
gccggttttgtaaggcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttagacctctttgaattgaatgacttcaaatat |
200 |
Q |
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||||||||||||||| |||| |||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||||||||||| |||||||||| | || |
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| T |
36668042 |
gccggttttgtaagggttgagttaattttga--agttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgacttcacaaat |
36667945 |
T |
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| Q |
201 |
catgttggctg |
211 |
Q |
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|||||||||| |
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| T |
36667944 |
tatgttggctg |
36667934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 29410043 - 29409974
Alignment:
| Q |
51 |
ctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttga |
120 |
Q |
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||||||||||||||||||| ||||||||||||||||| | || | ||||||||||||||||||| |||| |
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| T |
29410043 |
ctgaaaacatatttataatcggtgggcagtcatcactcaggacttcacaagccggttttgtaagggttga |
29409974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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