View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_high_59 (Length: 207)
Name: NF11137_high_59
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 49131514 - 49131697
Alignment:
| Q |
9 |
gagcagcacagagatgttgagaatggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatg |
108 |
Q |
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| T |
49131514 |
gagcagcacaaggatgttgagagtggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatg |
49131613 |
T |
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| Q |
109 |
atattgaatctaataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttcttttt |
192 |
Q |
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| T |
49131614 |
atattgaatctaataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgcggttcttttt |
49131697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 6922509 - 6922569
Alignment:
| Q |
132 |
gaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttcttttt |
192 |
Q |
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| T |
6922509 |
gaaaatggatccattggaatggttctgcttagcacatttgttgctgtttgtggttcttttt |
6922569 |
T |
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