View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11137_high_62 (Length: 201)
Name: NF11137_high_62
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_62 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0036 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 91466 - 91626
Alignment:
| Q |
25 |
gacgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagatt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91466 |
gacgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagatt |
91565 |
T |
|
| Q |
125 |
ggttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttgg |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91566 |
ggtttggagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttgg |
91626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 26672175 - 26672021
Alignment:
| Q |
26 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
125 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
26672175 |
acgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26672076 |
T |
|
| Q |
126 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagtt |
180 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
26672075 |
gtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagtt |
26672021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 26943773 - 26943619
Alignment:
| Q |
26 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
125 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
26943773 |
acgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26943674 |
T |
|
| Q |
126 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagtt |
180 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
26943673 |
gtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagtt |
26943619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 26901461 - 26901307
Alignment:
| Q |
26 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
125 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
26901461 |
acgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26901362 |
T |
|
| Q |
126 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagtt |
180 |
Q |
| |
|
|||| || |||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
26901361 |
gtttggaaattgaagatgctaagagggataaaattgagattcttgtgaaggagtt |
26901307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University