View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11137_high_8 (Length: 526)
Name: NF11137_high_8
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 192 - 510
Target Start/End: Complemental strand, 9444764 - 9444446
Alignment:
| Q |
192 |
caaatttattttagccacaccaaaactttagttctggttgtcattctttctccaatatttaataatatagttattgctttgcccttctatataaggaccc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444764 |
caaatttattttagccacaccaaaactttagttctggttgtcattctttctccaatatttaataatatagttattgctttgcccttctatataaggaccc |
9444665 |
T |
|
| Q |
292 |
tttcctacctaagtccatgccatctcaccaaacgttgcaatactcaatagtcttctttgtctactataatccaatagaatatataggttttcacacccct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
9444664 |
tttcctacctaagtccatgccatctcaccaaacgttgcaatactcaatagtcttcttcgtctactataatccaatagaatatataggttttcatactcct |
9444565 |
T |
|
| Q |
392 |
ctctaaatcagctttgagatctttatagagatgaaagccaccatcaaaattgtgtttatcattttggttctttcctatgtatatgttgctgctgttcctt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444564 |
ctctaaatcagctttgagatctttatagagatgaaagccaccatcaaaattgtgtttatcattttggttctttcctatgtatatgttgctgctgttcctt |
9444465 |
T |
|
| Q |
492 |
caacaagtaagtttctttg |
510 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9444464 |
caacaagtaagtttctttg |
9444446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9444971 - 9444893
Alignment:
| Q |
1 |
ctgagctaagctcacgaggacataaatgaacttggtttaataaaactactaaaattgttactttgggttaaaaaggaca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
9444971 |
ctgagctaagctcacgaggacataaatgaacttggtttaataaaactactaaaattgttgctttgggtgaaaaatgaca |
9444893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36803852 - 36803824
Alignment:
| Q |
1 |
ctgagctaagctcacgaggacataaatga |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36803852 |
ctgagctaagctcacgaggacataaatga |
36803824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University