View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_1 (Length: 910)
Name: NF11137_low_1
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 663; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 77 - 895
Target Start/End: Complemental strand, 27215534 - 27214710
Alignment:
| Q |
77 |
atggaatgattgacttggcttggtgta-----tagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtgatgaaata |
171 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27215534 |
atggaatgactgacttggcttggtgtaaaccatagggtaaactactatctgttgaaaatggcatattggaaaaggagaacagaaggttagtgatgaaata |
27215435 |
T |
|
| Q |
172 |
catggaaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcatcgactgttca |
271 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27215434 |
caaggaaaggagtcatacagaatctggtggaaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcatcgactgttca |
27215335 |
T |
|
| Q |
272 |
gtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaagtccagttccaagacaagtagctcgagctcgatgg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27215334 |
gtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaagtccagttccaagacaagtagctcga------tgg |
27215241 |
T |
|
| Q |
372 |
cgaagaaggttgattttgatgatttggattcagtatcacctagacaagcat---cacccttgcaaagaaactctgtacatgtcttcaccaccattgtcta |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
27215240 |
cgaagaaggttgattttgatgatttggattcagtatcacctagacaagctttgtcacccttgcaaagtaactctgtacatgtggtcaccaccattgtcta |
27215141 |
T |
|
| Q |
469 |
g-ttcatcttcctctaactaga--accattttgatgatctttcaaagtgataaatatgtagtttgacacggttactatatttttcatttgttgaagttgg |
565 |
Q |
| |
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| |||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
27215140 |
gattcatcttcctctaaccagacaactgttttgatgatctttcaaagtgatctatatgtagtttggcacggttactatatttttcatttgctgaagttgg |
27215041 |
T |
|
| Q |
566 |
ttttgattcttaaa-ccatgaaaaaacagtgggtgttatgtgcctgaaaaacctcgacatagttatgcagtacctgaaaaatctttactagtaaagatta |
664 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27215040 |
ttttgattcttaaaaccatgaaaaaacagtgggtgttatgtgcctgaaaaacctcgacatagttatgcagtacctgaaaaatctttactagtaaagatta |
27214941 |
T |
|
| Q |
665 |
atttttcaaaagaaattgaggaatccattaccatttaggagtgtataataaaatacaaaaaaggtacttaagaaactgattgacattaaatgaacattta |
764 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27214940 |
atttttcaaaagaaattgaggaatccatttccatttaggagtgtataataaaatacaaaaaaggtacttaagaaactgattgacattaaatgaacattta |
27214841 |
T |
|
| Q |
765 |
tacaccaaatttattaggggtgttcaccggttagggtgatccgtttaaccttgtaactcaacccgaaccaaactacatttacccaaactttgagtctaac |
864 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27214840 |
tacaccaaatttattaggggtcttcaccggtccgggtgacccgtttaaccttgtaactcaacccgaaccaaactacatttacccaaactttgagtctaac |
27214741 |
T |
|
| Q |
865 |
tcgaaccaatccattcaaatttgtagtactt |
895 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
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|
| T |
27214740 |
tcgagccaatccattcaaatttgtagtactt |
27214710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 77 - 723
Target Start/End: Complemental strand, 27237132 - 27236498
Alignment:
| Q |
77 |
atggaatgattgacttggcttggtgtatagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtgatgaaatacatgg |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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|
| T |
27237132 |
atggaatgactgacttggcttggtgtatagggtaaactactatctgttgaaaatggcatattggaaaaggagaacagaaggttagtgatgaaatacaagg |
27237033 |
T |
|
| Q |
177 |
aaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcatcgactgttcagtttc |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27237032 |
aaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcatcgactgttcagtttc |
27236933 |
T |
|
| Q |
277 |
atttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaagtccagttccaagacaagtagctcgagctcgatggcgaag |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27236932 |
atttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaagtccagttccaagacaagtagc------tcgatggcgaag |
27236839 |
T |
|
| Q |
377 |
aaggttgattttgatgatttggattcagtatcacctagacaagc---atcacccttgcaaagaaactctgtacatgtcttcaccaccattgtctag-ttc |
472 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
27236838 |
aaggttgattttgatgatttagattcagtgtcacctagacaagctttgtcacccttgcaaagtaactctgtacatgtcgtcaccaccattgtctagattc |
27236739 |
T |
|
| Q |
473 |
atcttcctctaactag--aaccattttgatgatctttcaaagtgataaatatgtagtttgacacggttactatatttttcatttgttgaagttggttttg |
570 |
Q |
| |
|
|||||||| |||| || ||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
27236738 |
atcttcctttaaccagacaactgttttgatgatctttcaaagtgatctatatgtagtttggcacagttactatatttttcatttgctgaagttggttttg |
27236639 |
T |
|
| Q |
571 |
attctt-aaaccatgaaaaaacagtgggtgttatgtgcctgaaaaacctcgacatagttatgcagtacctgaaaaatctttactagtaaagattaatttt |
669 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | | | ||||| |||||||||||||||| |
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| T |
27236638 |
attcttaaaaccatgaaaaaacagtgggtgttatgtgcctga-----------atagttatgcagtgcagggtacggttttacgagtaaagattaatttt |
27236550 |
T |
|
| Q |
670 |
tcaaaagaaattgaggaatccattaccatttaggagtgtataataaaatacaaa |
723 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| |
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|
| T |
27236549 |
tcaaaagaaa--gaggaattcattaccatttaggaatgtataataacatacaaa |
27236498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 27201259 - 27201170
Alignment:
| Q |
77 |
atggaatgattgacttggcttggtgta-----tagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtg |
163 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
27201259 |
atggaatgactgacttggcttggtgtaaaccatagggtaaactactatctgttgaa--tggcatattggaaaaggagaacagaaggttagtg |
27201170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 601
Target Start/End: Complemental strand, 27201154 - 27201072
Alignment:
| Q |
519 |
atatgtagtttgacacggttactatatttttcatttgttgaagttggttttgattcttaaaccatgaaaaaacagtgggtgtt |
601 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||| | || |||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
27201154 |
atatgtagtttgacacagttactgtttctttcatttgcttaaattggtttttattcttaaactatgaaaaaacagtgggtgtt |
27201072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 27201332 - 27201291
Alignment:
| Q |
4 |
tcgagagagatgaagaggaagtgaggattgctgaccacctta |
45 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
27201332 |
tcgacagagctgaagaggaggtgaggattgctgaccacctta |
27201291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 27215607 - 27215566
Alignment:
| Q |
4 |
tcgagagagatgaagaggaagtgaggattgctgaccacctta |
45 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
27215607 |
tcgacagagctgaagaggaggtgaggattgctgaccacctta |
27215566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 27237205 - 27237164
Alignment:
| Q |
4 |
tcgagagagatgaagaggaagtgaggattgctgaccacctta |
45 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
27237205 |
tcgacagagctgaagaggaggtgaggattgctgaccacctta |
27237164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 45658730 - 45658688
Alignment:
| Q |
316 |
tttgcagtcaaacaagagaaagtccagttccaagacaagtagc |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
45658730 |
tttgcagtcaaacaagagaaagtctagtcccaaaacaagtagc |
45658688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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