View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11137_low_10 (Length: 510)
Name: NF11137_low_10
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 100 - 493
Target Start/End: Complemental strand, 35291061 - 35290668
Alignment:
| Q |
100 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaacctgtgtaatacaatctgaagaatctctctaagag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
35291061 |
aatatactttatattatgtctcagtaatgataagtgctgatctatagatattggtaatcatgtaatctgtgtaatacaatctgaagaatctccctaagag |
35290962 |
T |
|
| Q |
200 |
actaagacttaagggagactaaaggatgaaagagaaagaaatgacttagaatactagtgcattttattatacacactcctaatattgcagcaaaatttgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35290961 |
actaagacttaagggagactaaaggatgaaagagaaagaaatgacttagaatactagtgcattttattatacacactcctaatattgcagcaaaatttgg |
35290862 |
T |
|
| Q |
300 |
aaaaaaggctattcatatgtcgcgacaccatctgtactgactgcattttgtaaataagatcttatataaatcaataaatctgcttcagctacaagccttc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35290861 |
aaaaaaggctattcatatgtcgcgacaccatctgtactgacagcattttgtaaataagatcttatataaatcaataaatctgcttcagctacaagccttc |
35290762 |
T |
|
| Q |
400 |
tgaaagttttcaccagtcagatattgtagaaatttacatcttgcaagcatcgttgtctttgcatacttcaccctgtaaaaagtattaaaagtaa |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35290761 |
tgaaagttttcaccagtcagatattgtagaaatttacatcttgcaagcatcgctgtctttgcatacttcaccctgtaaaaagtattaaaagtaa |
35290668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 35291120 - 35291063
Alignment:
| Q |
12 |
acagacacagatagtatagtagatgtatttgctttgtatgtttatgtaggtatataca |
69 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35291120 |
acagacacagatagtatagtagatgtgtttgctttgtatgtttatgtaggtatataca |
35291063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University