View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11137_low_15 (Length: 456)

Name: NF11137_low_15
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11137_low_15
NF11137_low_15
[»] chr3 (8 HSPs)
chr3 (22-447)||(30719407-30719823)
chr3 (118-441)||(30701943-30702266)
chr3 (116-444)||(30707126-30707454)
chr3 (59-100)||(1502590-1502631)
chr3 (59-102)||(4946206-4946249)
chr3 (67-104)||(30367629-30367666)
chr3 (64-104)||(19730216-19730256)
chr3 (64-104)||(19750806-19750846)
[»] chr7 (9 HSPs)
chr7 (58-104)||(10893870-10893916)
chr7 (67-104)||(18750888-18750925)
chr7 (59-104)||(44172892-44172937)
chr7 (58-98)||(30013213-30013253)
chr7 (65-104)||(650531-650570)
chr7 (65-104)||(43160496-43160535)
chr7 (59-104)||(21238829-21238874)
chr7 (64-104)||(10893354-10893394)
chr7 (64-104)||(32855366-32855406)
[»] chr8 (3 HSPs)
chr8 (65-104)||(32691755-32691794)
chr8 (65-104)||(31681838-31681877)
chr8 (65-103)||(8917544-8917582)
[»] chr5 (3 HSPs)
chr5 (68-104)||(645344-645380)
chr5 (59-104)||(28322253-28322298)
chr5 (64-104)||(10358115-10358155)
[»] chr4 (8 HSPs)
chr4 (65-105)||(683063-683103)
chr4 (65-104)||(45615423-45615462)
chr4 (65-103)||(9988707-9988745)
chr4 (58-104)||(41989576-41989622)
chr4 (58-87)||(51939141-51939170)
chr4 (68-104)||(8457937-8457973)
chr4 (69-101)||(29388378-29388410)
chr4 (71-103)||(50216696-50216728)
[»] chr6 (3 HSPs)
chr6 (59-102)||(32125175-32125218)
chr6 (59-104)||(6284663-6284708)
chr6 (68-104)||(32125420-32125456)
[»] chr1 (1 HSPs)
chr1 (65-104)||(26462653-26462692)
[»] chr2 (1 HSPs)
chr2 (66-104)||(35198240-35198278)


Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 22 - 447
Target Start/End: Original strand, 30719407 - 30719823
Alignment:
Q  22 caccgacacttctgatcgaagagacatccaatgtaggacacaaacacatgtgattacattcaattacgtcattttcttaaattcagcatcaattatatag 121  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||         |||||||||||||||||||||||||||||    
T  30719407 caccgacacttctgatcgaagagatatccaatgtaggacacagacacatgtgattacattca---------ttttcttaaattcagcatcaattatatag 30719497  T
Q  122 aaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacatttcgaataagctcctctctttgag 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30719498 aaatgcaaaacaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacattttgaataagctcctctctttgag 30719597  T
Q  222 aagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagctcctcttggttcctagaacaagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719598 aagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagctcctcttggttcctagaacaagt 30719697  T
Q  322 gtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgccggtgatgagagcagtgaatcccttgagggaccat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30719698 gtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgtgttccgccggtgacgagagcagtgaatcccttgagggaccat 30719797  T
Q  422 cttgagcttctgctactgctctctgc 447  Q
    ||||||||||||||||||||||||||    
T  30719798 cttgagcttctgctactgctctctgc 30719823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 118 - 441
Target Start/End: Original strand, 30701943 - 30702266
Alignment:
Q  118 atagaaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacatttcgaataagctcctctctt 217  Q
    |||||||||||||| |||||||||||||||| ||||||||||||  |||||||| ||||| ||||||| ||||||||| |||| || |||||| ||||||    
T  30701943 atagaaatgcaaaacaaaatatatagaaaagaaaaaactcacaagaatgttgagcttgccgttgaaagcagaagccacttttctaacaagctcttctctt 30702042  T
Q  218 tgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagctcctcttggttcctagaac 317  Q
    |||||||||||||   |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||  || ||||  ||||||||||    
T  30702043 tgagaagaagaagtcacatcacaaactgatccataaacagaaaaacctttctccttccactcatttaagcatttattcaattcttcttcattcctagaac 30702142  T
Q  318 aagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgccggtgatgagagcagtgaatcccttgaggga 417  Q
    ||||||| ||| | |||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||  ||||| |||||||||||||||||    
T  30702143 aagtgtacactatagcaccaaactcagcaagttcctctacgatagcatgaccgatcccacgagttccgccggtgacaagagctgtgaatcccttgaggga 30702242  T
Q  418 ccatcttgagcttctgctactgct 441  Q
    |||||||||||||||||| |||||    
T  30702243 ccatcttgagcttctgcttctgct 30702266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 116 - 444
Target Start/End: Original strand, 30707126 - 30707454
Alignment:
Q  116 atatagaaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacatttcgaataagctcctctc 215  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||| |||||| || | |||||||||||||||||    
T  30707126 atatacaaatgcaaaacaaaatatatagaaaaagaaaaactcacaagtatgttgagcttgccgttgaaagcagaagcaacttgtcgaataagctcctctc 30707225  T
Q  216 tttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcatttaagcgtttattcagctcctcttggttcctaga 315  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||  ||||||||    
T  30707226 tttgagaaggagaagaagcatcacaaaccgatccatagacagaaaaacccttctctttccactcatttaagcatttattcagctcttcttcattcctaga 30707325  T
Q  316 acaagtgtagactgtggcaccaaactcagcgagttcttccacgatagcatgtccgattccacgcgttccgccggtgatgagagcagtgaatcccttgagg 415  Q
     |||||| | |||||||||||||||||||| ||||| ||||| | |||||| ||||||||||| ||||| || || |  ||||||||   |||||||||     
T  30707326 gcaagtgaacactgtggcaccaaactcagctagttcctccaccacagcatgaccgattccacgagttccaccagtaactagagcagtagttcccttgaga 30707425  T
Q  416 gaccatcttgagcttctgctactgctctc 444  Q
    ||||||||||||| |||  ||||||||||    
T  30707426 gaccatcttgagcctctcatactgctctc 30707454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 1502631 - 1502590
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttctta 100  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  1502631 acacagacacatgtgattacattcaattatgtcattttctta 1502590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 4946206 - 4946249
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaa 102  Q
    ||||| |||||||||||||||||||||||  |||||||||||||    
T  4946206 acacagacacatgtgattacattcaattatatcattttcttaaa 4946249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 30367629 - 30367666
Alignment:
Q  67 acatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  30367629 acatttgattacattcaattatgtcattttcttaaatt 30367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 19730216 - 19730256
Alignment:
Q  64 aacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  19730216 aacacatgtgatcacattcaattatgtcattttctcaaatt 19730256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 19750806 - 19750846
Alignment:
Q  64 aacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  19750806 aacacatgtgatcacattcaattatgtcattttctcaaatt 19750846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 10893870 - 10893916
Alignment:
Q  58 gacacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  10893870 gacaccaacacatgtgattacattcaattatgtcattttcttaaatt 10893916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 18750925 - 18750888
Alignment:
Q  67 acatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaatt 18750888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 44172892 - 44172937
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaatt 44172937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 30013253 - 30013213
Alignment:
Q  58 gacacaaacacatgtgattacattcaattacgtcattttct 98  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  30013253 gacacaaacacatgtgattatattgaattacgtcattttct 30013213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 650570 - 650531
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  650570 acacatgtgattgcattcaattatgtcattttcttaaatt 650531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 43160535 - 43160496
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  43160535 acacatgtgattacattcaattatgttattttcttaaatt 43160496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 21238874 - 21238829
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||| |||||||||||||||||||||||  | ||||||||||||||    
T  21238874 acactaacacatgtgattacattcaattttgacattttcttaaatt 21238829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 10893354 - 10893394
Alignment:
Q  64 aacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||| ||||||||||||||| |||||||||| |||||    
T  10893354 aacacatgcgattacattcaattatgtcattttctcaaatt 10893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 32855406 - 32855366
Alignment:
Q  64 aacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  32855406 aacacatatgattacattcaattaaatcattttcttaaatt 32855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 32691794 - 32691755
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcattttcttaaatt 32691755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 31681838 - 31681877
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  31681838 acacatgtgatttcattcaattatgtcattttcttaaatt 31681877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 8917544 - 8917582
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaat 103  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  8917544 acacatctgattacattcaattatgtcattttcttaaat 8917582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 645380 - 645344
Alignment:
Q  68 catgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||||||||||| ||||||||||||||||    
T  645380 catgtgattacattcaattatgtcattttcttaaatt 645344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 28322298 - 28322253
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||| ||||||||||||||||||||||||  ||||||||| |||||    
T  28322298 acaccaacacatgtgattacattcaattaattcattttctcaaatt 28322253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 10358155 - 10358115
Alignment:
Q  64 aacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  10358155 aacacatttgattacattcagttatgtcattttcttaaatt 10358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 683103 - 683063
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaattc 105  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  683103 acacatgtgattacattcaattatgtcattttctcaaattc 683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 45615423 - 45615462
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  45615423 acacatgtgattacgttcaattatgtcattttcttaaatt 45615462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 9988707 - 9988745
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaat 103  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaat 9988745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 41989622 - 41989576
Alignment:
Q  58 gacacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||  | |||||||||||||| ||||||||||||||||    
T  41989622 gacacaaacacagttaattacattcaattatgtcattttcttaaatt 41989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 51939170 - 51939141
Alignment:
Q  58 gacacaaacacatgtgattacattcaatta 87  Q
    ||||||||||||||||||||||||||||||    
T  51939170 gacacaaacacatgtgattacattcaatta 51939141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 8457973 - 8457937
Alignment:
Q  68 catgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||||||||||| |||||||||| |||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaatt 8457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 29388378 - 29388410
Alignment:
Q  69 atgtgattacattcaattacgtcattttcttaa 101  Q
    ||||||||||||||||||| |||||||||||||    
T  29388378 atgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 50216696 - 50216728
Alignment:
Q  71 gtgattacattcaattacgtcattttcttaaat 103  Q
    ||||||||||||||||| |||||||||||||||    
T  50216696 gtgattacattcaattatgtcattttcttaaat 50216728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 32125218 - 32125175
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaa 102  Q
    ||||| ||||||||||||||||||||||| || |||||||||||    
T  32125218 acacatacacatgtgattacattcaattaagtgattttcttaaa 32125175  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 6284663 - 6284708
Alignment:
Q  59 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||| |||||||||||||| ||||||||| |||||||||| |||||    
T  6284663 acactaacacatgtgattaaattcaattatgtcattttctcaaatt 6284708  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 32125456 - 32125420
Alignment:
Q  68 catgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  32125456 catgtgattacattccattaggtcattttcttaaatt 32125420  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 26462653 - 26462692
Alignment:
Q  65 acacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaatt 26462692  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 35198240 - 35198278
Alignment:
Q  66 cacatgtgattacattcaattacgtcattttcttaaatt 104  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35198240 cacatgtgattacattcaattaattcattttcttaaatt 35198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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