View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_17 (Length: 445)
Name: NF11137_low_17
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 152952 - 153371
Alignment:
| Q |
10 |
gcatagggggcaaattctctaactatcacgttttctaacaaaaaatgggagggttttgtaaattaaaaatagtgtaacaatggaagatgttttattttgt |
109 |
Q |
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| T |
152952 |
gcatggggggcaaattctctaactatcacgttttataacaaaaaatgggagggttttgtaaattaaaaatagtgtaacaatggaagatgttttattttgt |
153051 |
T |
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| Q |
110 |
gcatagcttcatggcttacagctttcaaagtgttttttgaattgcgattgtcggttttgatacgacttttgcagagttgtgctaatattttaataaacgt |
209 |
Q |
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| T |
153052 |
gcatagcttcatggcttacagctttcaaagtgtttattgaattgcgattgtcggttttgatacgacttttgcagaattgtgttaatattttaataaactt |
153151 |
T |
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| Q |
210 |
ttgttgtgtttgtgttgaatataagtataattgagatatgtgttaattttggtggcatgtactatgcaggttaattgagaatgatctattgaaacaggac |
309 |
Q |
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| T |
153152 |
ttgttgtgtttgtgttgaatataagtataattgagatatatgttaattttggtggcatgtactatgcaggttaattgagaatgatctattgaaacaggac |
153251 |
T |
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| Q |
310 |
tggaggtcaagaacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgttgggttcttta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153252 |
tggaggtcaagaacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgttgggttcttta |
153351 |
T |
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| Q |
410 |
ataaccttggagttgagaat |
429 |
Q |
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| T |
153352 |
ataaccttggagttgagaat |
153371 |
T |
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