View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_19 (Length: 438)
Name: NF11137_low_19
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 28441712 - 28441307
Alignment:
| Q |
19 |
ccatcgtctccactgccaaaaccacccttccattcaccatggaagaagaaattccggcggaagacagattcagtgcattacccgatcaagttctaacaca |
118 |
Q |
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| T |
28441712 |
ccatcgtctccactgccaaaaccacccttccattcaccatggaagaaggaattccggcggaagacagattcagtgcattacccgatcaagttctaacaca |
28441613 |
T |
|
| Q |
119 |
cattacatcttttcttccaatggaagatatttacaagatctcaaatctttcctttcgtttgtcctacttccccattcacaagttcacattcacgatcggt |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
28441612 |
cattacatcttttcttccaatggaagatattttcaagatctcaaatctttcctttcgtttgtccaatttccccattcacaagttcacattcacgatcggt |
28441513 |
T |
|
| Q |
219 |
tgtcattaccttacaaaggaggacttgatgaggttcacttattttgttagtttgaatctgctagcttgtttcgatggtgtatttaatcttgaaattactt |
318 |
Q |
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| T |
28441512 |
tctcattaccttacaaaggaggacgtggagaggttcgctcattttgttggtatgaatcttctagcttgtttcgatggtgtatttaatcttgaaattactt |
28441413 |
T |
|
| Q |
319 |
tcacacacaccttctatatggagaatttcacaccttattatatcaatctctggggcaatcttcttgtccaacgaggtgttcgagaactttctttaattca |
418 |
Q |
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||||||||| || ||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
28441412 |
tcacacacaactgctatatggagaatttcacacc---ttatatcaaaatctggtgcaatcatctggtccaacgaggtgttcgagaactttctttaattca |
28441316 |
T |
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| Q |
419 |
gcgattcat |
427 |
Q |
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| T |
28441315 |
gcgattcat |
28441307 |
T |
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