View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_22 (Length: 412)
Name: NF11137_low_22
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_22 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 154 - 412
Target Start/End: Original strand, 3904264 - 3904522
Alignment:
| Q |
154 |
ataatcgtgatgtgcattggaaagatatttgtacttaagaattcgaaaaataaatgatatttatattcaaaaagaattgctaagaaattttcattatatc |
253 |
Q |
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| T |
3904264 |
ataatcgtgatgtgcattggaaagatatttgtatttaagaattcaaaaaataaatgatatttatatttaaaaagaattgctaataaattttcattatatc |
3904363 |
T |
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| Q |
254 |
agcttgtgtatttattttggttttctatttatgtggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggtttta |
353 |
Q |
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| T |
3904364 |
agcttttatatttattttagtttgctatttatgtggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggtttta |
3904463 |
T |
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| Q |
354 |
tcaatggaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttc |
412 |
Q |
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| T |
3904464 |
tcaatagaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttc |
3904522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 3903977 - 3904107
Alignment:
| Q |
20 |
atctgctgagctaatcatcaacactaaatttctgttcaagcaatgtgatatttatttctaaagtataataataaatcatgggaagaaaatgttttatttt |
119 |
Q |
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| T |
3903977 |
atctgctgagcaaatcatcaacactaaatttctgttcaagcaatgtgacatttatttctaaagtataataataaattatgggaagaaaatgttttatttt |
3904076 |
T |
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| Q |
120 |
ctctcctgtacctgttttaaacaaacttata |
150 |
Q |
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| T |
3904077 |
ctctcttgtacctgttttaaacaaacttata |
3904107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 3906814 - 3906997
Alignment:
| Q |
20 |
atctgctgagctaatcatcaacactaaatttctgttcaag-caatgtgatatttatttctaaagtataataa-------taaatcatgggaagaaaatgt |
111 |
Q |
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| T |
3906814 |
atctgctgaacaaatcatcaacactaaatttttgttcaaatcaatgtgatttctatttctaaagtataataaataataatagatcataggaaggaaatgt |
3906913 |
T |
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| Q |
112 |
tttattttctctcctgtacctgttttaaacaaacttat----ataaataatcgtgatgtgcattggaaagatatttgtacttaa |
191 |
Q |
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| T |
3906914 |
tctattttctttcttgtacctgttttacacaaacttatatcaataaataatcgtgatgtgcatgggaaagatatttgtatttaa |
3906997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 3907561 - 3907682
Alignment:
| Q |
287 |
tggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggttttatcaatggaacgtcgaaacgtctcgtgttata-t |
385 |
Q |
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| T |
3907561 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttaggttttat-tttgggacgtcgaaacgtctcattttatagt |
3907659 |
T |
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| Q |
386 |
agtatcaagcagtctcattccaa |
408 |
Q |
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| T |
3907660 |
agtatcaagcaatctcattccaa |
3907682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 3906983 - 3907021
Alignment:
| Q |
209 |
gatatttatattcaaaaagaattgctaagaaattttcat |
247 |
Q |
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| T |
3906983 |
gatatttgtatttaaaaagaattgctaagaaattttcat |
3907021 |
T |
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