View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_27 (Length: 371)
Name: NF11137_low_27
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 32461143 - 32460797
Alignment:
| Q |
20 |
acccatccgtcactccctctttactgatcgccaccaccacgggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaacattttccc |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461143 |
acccatccgtcactccctctttactcatcgccaccaccacgggcggcgccaccgcaacattagtcactctaaacctctccacggcacccaacattttccc |
32461044 |
T |
|
| Q |
120 |
caattcaaacctctccatcatcaccaccgtttccatcatagccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgttaacaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32461043 |
caattcaaacctctccatcatcaccaccgtttccatcatagccacacccttcaaaaggtacgtaaaaccgtacacgtgaaaacacggcactgttaacaaa |
32460944 |
T |
|
| Q |
220 |
cacaccgcaggactcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgatttccctg |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32460943 |
cacaccgcaggattcgccgtcggaatcctaacggcattgtatgccgccaccgtcgccgtcaagttgcgatgagtaagcatcactcctttcgatttccctg |
32460844 |
T |
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| Q |
320 |
tggttcctgatattagagatataaaagttagttatattcatctcact |
366 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
32460843 |
tggttcctgatattagagatataaaagctagttatattcatttcact |
32460797 |
T |
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