View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_28 (Length: 356)
Name: NF11137_low_28
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 11994700 - 11994368
Alignment:
| Q |
12 |
agagaggaagaataaatggacaaacagaaagacagaaaatgaatggggtagtgtttgagaagacccacacaacacaaccaacacaaaaagacatggcctt |
111 |
Q |
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| T |
11994700 |
agagaggaggaataaatggacaaatagaaagacagaaaatgaatggggtagtgtttgagaagacccacacaacacaaccaacacaaaaagacatggcctt |
11994601 |
T |
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| Q |
112 |
aatgctccttcggcttccactataaaaaaggaaaggcccactacattcaatagtaacatttctaataatcttttagctgatataagattttttccgacca |
211 |
Q |
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| T |
11994600 |
aatgctccttcggcttccactataaaaaaggaaaggcccactacattcaatagtaacatttctaataatcttttagctgatataagattttttccgacca |
11994501 |
T |
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| Q |
212 |
aagaaaaaggtgataagatttttataannnnnnngcctnnnnnnnnnttataatgtttctcattatattatgatg-----aagatagggaagatattatt |
306 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11994500 |
aagaaaaaggtgataagatttttataatttttttgcctaaaaaaaaattataatgtttctcattatattatgatgaagctaagatagggaagatattatt |
11994401 |
T |
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| Q |
307 |
atttctatatatgtcagtctgtgtgtatgtact |
339 |
Q |
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|||||||| |||||| || |||||||||||||| |
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| T |
11994400 |
atttctatgtatgtcggtatgtgtgtatgtact |
11994368 |
T |
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